BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40060.1
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483043 jgi|Araly1|483043|fgenesh2_kg.4__2103__AT2G40060.1 1565 0.0
> Ahg483043 jgi|Araly1|483043|fgenesh2_kg.4__2103__AT2G40060.1
Length=970
Score = 1565 bits (847), Expect = 0.0
Identities = 931/971 (96%), Gaps = 8/971 (1%)
Strand=Plus/Plus
Query 77 AGAGATGTCTGCCTTTGAAGACGATTCCTTCGTCATACTCAACGATGATGCGTCTGAGTC 136
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGATGTCTGTCTTTGAAGACGATTCCTTCGTCATACTCAACGATGATGCGTCTGAGTC 60
Query 137 TGTTCCAGTCTCAGGCTCTTTTGACGCCACTGATTCTTTCTCAGCTTTCGACGGCTCACT 196
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||| |
Sbjct 61 TGTTCCAGTCTCAGGCTCTTTTGACGCCACTGACTCTTTCTCAGCCTACGACGGCTCAGT 120
Query 197 CCAAGTCGAGGACTCCGTCGACGATGTTTTTGCAGCGCCGTCTTCTGACTACGGTGCTTA 256
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 CCAAGTCGATGACTCCGTCGACGATGTTTTTGCAGCGCCTTCTTCTGACTACGGTGCTTA 180
Query 257 CTCCAACGGTGACGGCATCTTCGGATCCAACGGGGATCACGACGGTCCTATCTTGCCACC 316
||| |||||||||||| |||||||||||||||| || |||||||||||||||||||||||
Sbjct 181 CTCGAACGGTGACGGCGTCTTCGGATCCAACGGTGAACACGACGGTCCTATCTTGCCACC 240
Query 317 ACCGTCGGAGATGGAATCAGATGAGGGATTTGCTCTTAGAGAATGGAGAAGACAAAATGC 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 ACCGTCGGAGATGGAATCAGATGAGGGATTTGCTCTTAGAGAATGGAGAAGACATAATGC 300
Query 377 AATTCAACTTGAGGAGAAGGAGAAGAGAGAAAAGGAATTGTTGAAGCAAATTATTGAGGA 436
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AATTCAACTTGAAGAGAAGGAGAAGAGAGAAAAGGAATTGTTGAAGCAAATTATTGAGGA 360
Query 437 AGCTGATCAATACAAAGAAGAGTTTCATAAGAAGATTGAAGTAACTTGTGAAAACAACAA 496
|||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 361 AGCTAATCAATACAAAGAAGAGTTCCATAAGAAGATTGAAGTAACTTGTCAAAACAACAA 420
Query 497 AGCAGCTAACAGAGAGAAGGAAAAGCTGTATCTGGAGAACCAAGAGAAGTTCTACGCGGA 556
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGCAGCTAACAGGGAGAAGGAAAAGCTGTATCTGGAGAACCAAGAGAAGTTCTACGCGGA 480
Query 557 ATCCAGCAAGAATTACTGGAAGGCAATAGCAGAGCTAGTTCCTAAAGAAGTTCCAACAAT 616
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 481 ATCCAGCAAGAATTACTGGAAGGCAATAGCAGAGCTAGTTCCTAAAGAGGTTCCAACAAT 540
Query 617 AGAGAAAAGGAGAGGaaaaaaaGAGCAACAAGATCCTAAGAAGCCAACAGTCTCTGTGAT 676
||||||||| |||||||| |||||||||||||| |||||||||||| || ||||||||||
Sbjct 541 AGAGAAAAGAAGAGGAAAGAAAGAGCAACAAGACCCTAAGAAGCCATCAATCTCTGTGAT 600
Query 677 TCAAGGTCCAAAGCCCGGTAAGCCAACCGATCTAACAAGAATGAGACAAATATTGGTGAA 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCAAGGTCCAAAGCCCGGTAAGCCAACCGATCTAACAAGAATGAGACAAATATTGGTGAA 660
Query 737 GCTCAAACACAACCCACCTTCTCACCTGAAACTCACTTCTCAACCTCCATCGGAGGAGGC 796
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 661 GCTCAAACACAACCCACCTTCTCACCTGAAGCTCACTTCTCAACCTCCATCGGATGAGGC 720
Query 797 GGCTGCTCCTCCAAAGAATGTTCCCGAAACCAAGCCCACTGAGGCAGTTACTGCTGCTTA 856
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 721 GGCTGCTCCTCCAAAGAATGTTCTCGAAACCAAGCCCACTGAGGCGGTTACTGCTGCTTA 780
Query 857 AAAACCTCCTTTG-TTTTCTTATTCGTTGCTTACATCT-GTGTGAATTCAGTCTTTGCAT 914
|||||||| |||| ||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct 781 AAAACCTC-TTTGGTTTTCTTATTCATTGCTTACATCTTGTGTGAATTCGGTCTTTGCAT 839
Query 915 TTCATTATGTGTTATAAACAGCTGAGAGATTTTATGGTTCATGTGTGTTATTAACATAAT 974
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 840 TTCATTATGTGTTATAAACAGCTGAGAGATCTTATGGGTCATGTGTGTTATTAACATAAT 899
Query 975 TATGTCATATTGGAATGATAACTTTTTATGTTT---T--AGTCAGTTACCATTGAATAGT 1029
||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 900 TATGTCATATTGGAATGATAACTTTTTATGTTTGAATTCAGTCAGTTACCATTGAAAAGT 959
Query 1030 GGTTAATATCT 1040
|||||||||||
Sbjct 960 GGTTAATATCT 970
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38732883672
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5