BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G40070.1

Length=2454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg359508 jgi|Araly1|359508|fgenesh1_pg.C_scaffold_301000003         804    0.0  


> Ahg359508 jgi|Araly1|359508|fgenesh1_pg.C_scaffold_301000003
Length=516

 Score =  804 bits (435),  Expect = 0.0
 Identities = 483/506 (95%), Gaps = 3/506 (1%)
 Strand=Plus/Minus

Query  870   CTGGCAAATTCCTCAACAGAGTCTGCTGCAAGGAACCATCTAACATCTAGACAACAAACT  929
             ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  503   CTGGCGAATTCCTCAACAGAGCCTGCTGCAAGGAACCATCTAACATCTAGACAACAAACT  444

Query  930   TCTTCTCCTGGATTGAGCTCTTCCAGTGGAGCAAGTCGAAGACCTTCATCATCTGGAGGA  989
             ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct  443   TCTTCTCCTGGATTGAGCTCTTCAAGTGGAGCAAGTCGAAGACCTTCATCGTCTGGAGGA  384

Query  990   CCTGGATCAAGACCTGCCACACCCACTGGAAGATCATCAACACTGACGGCAAATTCAAAA  1049
             |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  383   CCTGGATCAAGACCTGCCACACCCACTGGAAGATCATCAACACTGACGACAAATTCAAAA  324

Query  1050  TCCTCAAGGCCTTCAACACCCACTTCGCGAGCCACTGTCTCCTCAGCTACTCGACCTTCT  1109
             |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct  323   TCCTCAAGGCCTTCAACACCCACTTCGCGAGCTACTGTCTCCTCAACTACTCGACCTTCT  264

Query  1110  TTGACTAACTCGAGGTCCACAGTATCTGCAACGACTAAGCCCACGCCTATGAGTAGGTCA  1169
             |||||||| || |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct  263   TTGACTAATTCTAGGTCCACAGTATCTGCAACAACTAAGCCCACTCCTATGAGTAGGTCA  204

Query  1170  ACAAGTTTATCATCATCTAGGCTCACACCTACTGCATCTAAGCCGACTACCTCAACTGCT  1229
             || || || | |||||||||||||||||| |||||||||||||||||||  |||||||||
Sbjct  203   ACTAG-TT-T-ATCATCTAGGCTCACACCGACTGCATCTAAGCCGACTATTTCAACTGCT  147

Query  1230  AGATCTGCTGGTTCAGTAACTAGATCTACCCCTAGCACCACCACAAAATCTGCAGGTCCT  1289
             ||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||||||||
Sbjct  146   AGATCTGCTAGTTCAGCAACTAGATCTACCCCCAGCACCGCCACAAAATCTGCAGGTCCT  87

Query  1290  TCAAGGTCCACCACACCTCTGTCAAGATCTACTGCCAGATCTTCAACACCAACTTCAAGA  1349
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  86    TCAAGGTCCACAACACCTCTGTCAAGATCTACTGCCAGATCTTCAACACCAACTTCAAGA  27

Query  1350  CCCACACTTCCTCCATCTAAAACCAT  1375
             ||||||||||||||||||||||||||
Sbjct  26    CCCACACTTCCTCCATCTAAAACCAT  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 92483114860


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5