BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40080.1
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497391 jgi|Araly1|497391|fgenesh2_kg.301__1__AT2G40080.1 869 0.0
Ahg934787 jgi|Araly1|934787|scaffold_402775.1 606 5e-173
> Ahg497391 jgi|Araly1|497391|fgenesh2_kg.301__1__AT2G40080.1
Length=595
Score = 869 bits (470), Expect = 0.0
Identities = 562/602 (93%), Gaps = 23/602 (4%)
Strand=Plus/Plus
Query 19 AATTAAAAATTATTATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTGGCGGAGG 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATTAAAAATTATTATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTGGCGGAGG 60
Query 79 AGGCAGAGC----A-G-GGA-GAG--GATCCGGCGATGTGGGAGAATCTTGACCGGAATT 129
| ||||||| | | ||| ||| ||||| ||||||||||||||||||||||||||||
Sbjct 61 AAGCAGAGCAGGGAGGAGGAGGAGAAGATCCAGCGATGTGGGAGAATCTTGACCGGAATT 120
Query 130 TCAGACAAGTGCAATCAGTTTTAGACAGAAACAGATCACTGATTCAACAAGTCAACGACA 189
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAGACAAGTGCAATCAGTTTTGGACAGAAACAGATCACTGATTCAACAAGTCAACGACA 180
Query 190 ATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAAGAACTCA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAAGAACTCA 240
Query 250 ACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTCTCGTCGG 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 241 ACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTCTCATCGG 300
Query 310 GCTTTCACGGTGGGAAGAACGGTCACGATGGTGGTGGTGCTGCCGGAACTAGAGCTTAAT 369
| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 301 GGTTTCACGGTGGAAAGAACGGTCACGACGGTGGTGGTGCTGCCGGAACAAGAGCTTAAT 360
Query 370 GAACCGGAATCAAATTGTTTCTTCTTAGTTGGACCGGCCGGTTTGAGAATTTTGAATCTG 429
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 361 GAACCCGAATCAAATTGTTTCTTCTTAGTTGGACCGGCCGGTTTGAGAATTTTGAACCAG 420
Query 430 TCCGGTTCAAGCTATGATATAAAGT-A--A-ATGTTTAGTTTTTGTATTGCAATGATGAT 485
|||||||||||||| || | ||||| | | ||||| ||||||| ||||||||||||||
Sbjct 421 TCCGGTTCAAGCTAGGAAA-AAAGTTATTATATGTT-AGTTTTT--ATTGCAATGATGAT 476
Query 486 TGTCGTTA---GAATAATCCGTGGGAGCAAACCCATCTCTATTGGGGTTATTTTAGTTAT 542
||| |||| ||||||||||||||||||||||||||| |||||| |||||||| ||||
Sbjct 477 TGTTGTTATTAGAATAATCCGTGGGAGCAAACCCATCT--ATTGGG-TTATTTTAATTAT 533
Query 543 GGTTTTGAGTCTTTTTCAATGTGTCTCTACTGCAATCTCTCTAATGATTATAATAATAAT 602
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 534 GGTTTTGAGTCTTTTTCAATGTGTCTCTACTGCAATTTCTCTAATGATAATAATAATAAT 593
Query 603 TG 604
||
Sbjct 594 TG 595
> Ahg934787 jgi|Araly1|934787|scaffold_402775.1
Length=388
Score = 606 bits (328), Expect = 5e-173
Identities = 369/387 (95%), Gaps = 9/387 (2%)
Strand=Plus/Plus
Query 12 AAAACACAATTAAAAATTATTATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTG 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAAACACAATTAAAAATTATTATGAAGAGGAACGGCGAGACGAAACGGCGGAGGAACGTG 61
Query 72 GCGGAGGAGGCAGAGC----A-G-GGA-GAG--GATCCGGCGATGTGGGAGAATCTTGAC 122
|||||||| ||||||| | | ||| ||| ||||| |||||||||||||||||||||
Sbjct 62 GCGGAGGAAGCAGAGCAGGGAGGAGGAGGAGAAGATCCAGCGATGTGGGAGAATCTTGAC 121
Query 123 CGGAATTTCAGACAAGTGCAATCAGTTTTAGACAGAAACAGATCACTGATTCAACAAGTC 182
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 122 CGGAATTTCAGACAAGTGCAATCAGTTTTGGACAGAAACAGATCACTGATTCAACAAGTC 181
Query 183 AACGACAATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAA 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AACGACAATCACCAATCGAGAATGGCTGATAACATGTCGAAGAACGTTGCTTTGATTCAA 241
Query 243 GAACTCAACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTC 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 GAACTCAACGGAAACATTTCCAAGGTTGTTAACATGTATTCTGATCTCAATACTAGTTTC 301
Query 303 TCGTCGGGCTTTCACGGTGGGAAGAACGGTCACGATGGTGGTGGTGCTGCCGGAACTAGA 362
|| ||||| ||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 302 TCATCGGGGTTTCACGGTGGAAAGAACGGTCACGACGGTGGTGGTGCTGCCGGAACAAGA 361
Query 363 GCTTAATGAACCGGAATCAAATTGTTT 389
|||||||||||| ||||||||||||||
Sbjct 362 GCTTAATGAACCCGAATCAAATTGTTT 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22645012698
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5