BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40085.1 Length=449 Score E Sequences producing significant alignments: (Bits) Value Ahg483047 jgi|Araly1|483047|fgenesh2_kg.4__2107__AT2G40085.1 479 8e-135 Ahg887953 jgi|Araly1|887953|Al_scaffold_0301_1 316 7e-86 > Ahg483047 jgi|Araly1|483047|fgenesh2_kg.4__2107__AT2G40085.1 Length=353 Score = 479 bits (259), Expect = 8e-135 Identities = 305/327 (93%), Gaps = 4/327 (1%) Strand=Plus/Plus Query 54 CTCTATAATCTCCCCTG-CGATCAATAAGGACATTTTCTCCGATGGAAGAGAGTGATGCT 112 ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| Sbjct 29 CTCTATAATCTCCCC-GCCGATCAATAATAACATTTTCTCCGATGGAAGAGAGTGATGCT 87 Query 113 GTTCCAAAACCAGTTGTTGTTGATCCTCCATTATACGACGAAGCTTCTCCGTCAGCTTCT 172 ||||||||||||||||||||||| ||||||||||||||||||||| |||| || |||||| Sbjct 88 GTTCCAAAACCAGTTGTTGTTGACCCTCCATTATACGACGAAGCTCCTCCTTCGGCTTCT 147 Query 173 C-AGCGCCGTCCGGTGGTGATCGCCGCCGATGCAGCTCCTCCGGCAGAAAATCATCTCAT 231 | | ||||| |||||| ||||||||||||||||||||||||| | ||||||||||||||| Sbjct 148 CGA-CGCCGGCCGGTGATGATCGCCGCCGATGCAGCTCCTCCAGAAGAAAATCATCTCAT 206 Query 232 TCAAAGGATTCAAAGAGCTCTTGTGGAATTGCGCGAGTTGAGAAATCAGTTTAATGCCAT 291 ||| |||||||||||||||||||||||||||| || |||||||||||||||||||| || Sbjct 207 TCAGCGGATTCAAAGAGCTCTTGTGGAATTGCGTGAATTGAGAAATCAGTTTAATGCTAT 266 Query 292 TCTTAGGGAACTAGAATTCGAAGTGGGAGAAGAAGAAGAGCAAGCGGAATCATCAGTGGA 351 |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 267 TCTTAGGGAACTAGAAGTCGAAGTAGGAGAAGAAGAAGAGCAAGCGGAATCATCAGTGGA 326 Query 352 AGATCCAGAGGACTCTGATTCTTAGTT 378 |||||||||||||||||||||||||| Sbjct 327 GGATCCAGAGGACTCTGATTCTTAGTT 353 > Ahg887953 jgi|Araly1|887953|Al_scaffold_0301_1 Length=258 Score = 316 bits (171), Expect = 7e-86 Identities = 204/220 (93%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 95 ATGGAAGAGAGTGATGCTGTTCCAAAACCAGTTGTTGTTGATCCTCCATTATACGACGAA 154 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGGAAGAGAGTGATGCTGTTCCAAAACCAGTTGTTGTTGACCCTCCATTATACGACGAA 60 Query 155 GCTTCTCCGTCAGCTTCTC-AGCGCCGTCCGGTGGTGATCGCCGCCGATGCAGCTCCTCC 213 ||| |||| || ||||||| | ||||| |||||| ||||||||||||||||||||||||| Sbjct 61 GCTCCTCCTTCGGCTTCTCGA-CGCCGGCCGGTGATGATCGCCGCCGATGCAGCTCCTCC 119 Query 214 GGCAGAAAATCATCTCATTCAAAGGATTCAAAGAGCTCTTGTGGAATTGCGCGAGTTGAG 273 | |||||||||||||||||| |||||||||||||||||||||||||||| || ||||| Sbjct 120 AGAAGAAAATCATCTCATTCAGCGGATTCAAAGAGCTCTTGTGGAATTGCGTGAATTGAG 179 Query 274 AAATCAGTTTAATGCCATTCTTAGGGAACTAGAATTCGAA 313 ||||||||||||||| |||||||||||||||||| ||||| Sbjct 180 AAATCAGTTTAATGCTATTCTTAGGGAACTAGAACTCGAA 219 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 16216125325 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5