BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G40085.1

Length=449
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483047 jgi|Araly1|483047|fgenesh2_kg.4__2107__AT2G40085.1         479    8e-135
  Ahg887953 jgi|Araly1|887953|Al_scaffold_0301_1                       316    7e-86 


> Ahg483047 jgi|Araly1|483047|fgenesh2_kg.4__2107__AT2G40085.1
Length=353

 Score =  479 bits (259),  Expect = 8e-135
 Identities = 305/327 (93%), Gaps = 4/327 (1%)
 Strand=Plus/Plus

Query  54   CTCTATAATCTCCCCTG-CGATCAATAAGGACATTTTCTCCGATGGAAGAGAGTGATGCT  112
            ||||||||||||||| | ||||||||||  ||||||||||||||||||||||||||||||
Sbjct  29   CTCTATAATCTCCCC-GCCGATCAATAATAACATTTTCTCCGATGGAAGAGAGTGATGCT  87

Query  113  GTTCCAAAACCAGTTGTTGTTGATCCTCCATTATACGACGAAGCTTCTCCGTCAGCTTCT  172
            ||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||
Sbjct  88   GTTCCAAAACCAGTTGTTGTTGACCCTCCATTATACGACGAAGCTCCTCCTTCGGCTTCT  147

Query  173  C-AGCGCCGTCCGGTGGTGATCGCCGCCGATGCAGCTCCTCCGGCAGAAAATCATCTCAT  231
            | | ||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||
Sbjct  148  CGA-CGCCGGCCGGTGATGATCGCCGCCGATGCAGCTCCTCCAGAAGAAAATCATCTCAT  206

Query  232  TCAAAGGATTCAAAGAGCTCTTGTGGAATTGCGCGAGTTGAGAAATCAGTTTAATGCCAT  291
            |||  |||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct  207  TCAGCGGATTCAAAGAGCTCTTGTGGAATTGCGTGAATTGAGAAATCAGTTTAATGCTAT  266

Query  292  TCTTAGGGAACTAGAATTCGAAGTGGGAGAAGAAGAAGAGCAAGCGGAATCATCAGTGGA  351
            |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  267  TCTTAGGGAACTAGAAGTCGAAGTAGGAGAAGAAGAAGAGCAAGCGGAATCATCAGTGGA  326

Query  352  AGATCCAGAGGACTCTGATTCTTAGTT  378
             ||||||||||||||||||||||||||
Sbjct  327  GGATCCAGAGGACTCTGATTCTTAGTT  353


> Ahg887953 jgi|Araly1|887953|Al_scaffold_0301_1
Length=258

 Score =  316 bits (171),  Expect = 7e-86
 Identities = 204/220 (93%), Gaps = 2/220 (1%)
 Strand=Plus/Plus

Query  95   ATGGAAGAGAGTGATGCTGTTCCAAAACCAGTTGTTGTTGATCCTCCATTATACGACGAA  154
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    ATGGAAGAGAGTGATGCTGTTCCAAAACCAGTTGTTGTTGACCCTCCATTATACGACGAA  60

Query  155  GCTTCTCCGTCAGCTTCTC-AGCGCCGTCCGGTGGTGATCGCCGCCGATGCAGCTCCTCC  213
            ||| |||| || ||||||| | ||||| |||||| |||||||||||||||||||||||||
Sbjct  61   GCTCCTCCTTCGGCTTCTCGA-CGCCGGCCGGTGATGATCGCCGCCGATGCAGCTCCTCC  119

Query  214  GGCAGAAAATCATCTCATTCAAAGGATTCAAAGAGCTCTTGTGGAATTGCGCGAGTTGAG  273
             | ||||||||||||||||||  |||||||||||||||||||||||||||| || |||||
Sbjct  120  AGAAGAAAATCATCTCATTCAGCGGATTCAAAGAGCTCTTGTGGAATTGCGTGAATTGAG  179

Query  274  AAATCAGTTTAATGCCATTCTTAGGGAACTAGAATTCGAA  313
            ||||||||||||||| |||||||||||||||||| |||||
Sbjct  180  AAATCAGTTTAATGCTATTCTTAGGGAACTAGAACTCGAA  219



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16216125325


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5