BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40090.1
Length=1903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483048 jgi|Araly1|483048|fgenesh2_kg.4__2108__AT2G40090.1 2953 0.0
Ahg944776 jgi|Araly1|944776|scaffold_701005.1 104 2e-21
> Ahg483048 jgi|Araly1|483048|fgenesh2_kg.4__2108__AT2G40090.1
Length=1857
Score = 2953 bits (1599), Expect = 0.0
Identities = 1776/1862 (95%), Gaps = 10/1862 (1%)
Strand=Plus/Plus
Query 46 GCGTTCATTACGTGCTTCCTCAATGGCGGCACGATCCCTATGGAGAACCCGTACGAAGCT 105
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 GCGTTCATTACGTGCTTCCTCAATGGCGGCACGATCCCTTTGGAGAACCCGTACGAAGCT 60
Query 106 CCTCGTTGTTGGTACCGCCTTATGCGGTGGTTCCGGCGCCGCCTTCATTGCTTCCTCCGA 165
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CCTCGTTGTTGGTACCTCTTTATGCGGTGGTTCCGGCGCCGCCTTCATTGCTTCCTCCGA 120
Query 166 TGACCCATCAACAACCCTCAAGCTTTGCACCTCCATCCCCGTTCGTCTCTACCGCAATAC 225
|||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 121 TGACCCATCAACCACCCTCAAGCTTTGCACCTCCATCCCCGTCCGCCTCTACCGCAATAC 180
Query 226 CGTTACCGCCGCCTCTATTGCTTTCGATTATGAGTACTCGTTGTTGGGTTTGGCTGAGGG 285
|||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 181 CGTTACCGCCGCCTCTATCGCTTTCGATTATGAATACTCATTGTTGGGTTTGGCTGAGGG 240
Query 286 AAGCAGTGAGAGAGCTAAGGTCAAACATGAAGTCCACCTAAGGTCAGCTCAAAAGCTTCA 345
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGCAGTGAGAGGGCTAAGGTCAAACATGAAGTCCACCTAAGGTCAGCTCAAAAGCTTCA 300
Query 346 AGAGCTCTGTTTTAAAAATGGAGGAATCTATATCAAACTCGGCCAACATATAGGACAACT 405
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAGCTTTGTTTCAAAAATGGAGGAATCTATATCAAACTCGGCCAACATATAGGACAACT 360
Query 406 AGAATATCTTGTGCCTGAAGAGTATGTTCGTACTATGAGGGAGTCCATGTTGAACAAATG 465
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 361 TGAATATCTTGTGCCTGAAGAGTATGTTTGTACTATGAGAGAGTCCATGTTGAACAAATG 420
Query 466 CCCTATTTCTTCATATGAGCAAGTATGTGAGGTTTTTAAGAAAGAGGTTGGAGAGATGCC 525
|||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 421 CCCTGTTTCTTCGTATGAGCAAGTATGTGAGGTTTTCAAGAAAGAGGTTGGAGAGATGCC 480
Query 526 AGACCAAGTATTTGCTGAATTTGACCCTGTTCCAATTGCAAGTGCTTCCCTTGCTCAAGT 585
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGACAAAGTATTTGCTGAATTTGACCCTGTTCCAATTGCAAGTGCTTCCCTTGCTCAAGT 540
Query 586 TCATGTTGCTCGCACTCATGATGGAAAAAAGGTTGCTGTCAAGGTTCAACATGCGCACAT 645
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 TCATGTTGCTCGCACCCATGATGGAAAAAAAGTTGCTGTCAAGGTTCAACATGCGCACAT 600
Query 646 GACAGACACTGCAGCTGCGGACACTGCAGCTGTTGGAGTTTTAGTGAATACCTTGCACCG 705
|||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||| |
Sbjct 601 GACAGACACTGCTGCTGCGGACACTGCTGCTGTGGGAGTTTTAGTGAACACCTTGCACAG 660
Query 706 AATATTCCCATCATTTGACTATAGGTGGTTGCTCGACGAAATGAGTGAAAGCTTACCAAA 765
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 GATATTCCCATCATTTGACTATAGGTGGTTGCTAGACGAAATGAGTGAAAGCTTACCAAA 720
Query 766 GGAACTAGATTTTTTGGTTGAGGCGAAAAACAATGAGAAATGTCTGGATAATTTTAGGAA 825
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 721 GGAACTAGATTTTTTGGTTGAGGCAAAAAACAATGAGAAATGTCTGGATAATTTTAGGAA 780
Query 826 GCTGTCTCCCCATATTGCAGAGTATGTTTATGCGCCAACAATCTATTGGAATTTGAGTAC 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCTGTCTCCCCATATTGCAGAGTATGTTTATGCGCCAACAATCTATTGGAATTTGAGTAC 840
Query 886 CTCTAAGTTGTTGACAATGGAGTTCATGGATGGTGCTCAAGTGAACGATGTTGATAAGAT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 CTCTAAGTTGTTGACAATGGAGTTCATGGATGGTGCTCAAGTGAACGATGTTGCTAAGAT 900
Query 946 CAGAAAGCTTGGGATTCAGCCCTATGAAGTATCAAAGCTCGTGAGTCAAACATTTGCAGA 1005
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 901 CAGAAAGCTTGGGATTCAGCCCTATGAAGTATCAAAGCTTGTGAGTCAAACTTTTGCAGA 960
Query 1006 AATGATGTTTAAACATGGGTTTGTGCACTGTGACCCACACGCTGCCAATTTGATTGTTCG 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AATGATGTTTAAACATGGGTTTGTGCACTGTGACCCACACGCTGCCAATTTGATTGTTCG 1020
Query 1066 TCCAGATCCTTCTGGTAAGAGGAACATATATGGCAAGAGAAAACCGCAATTAGTGATTCT 1125
|||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 TCCAGATCCTTCTGGTAAAAGGAACATATATGGCAAGAGAAAACCGCAACTAGTGATTCT 1080
Query 1126 TGACCATGGCTTGTACAAGGAGCTTGACTTCAACACAAGATTCAACTATGCTTCACTGTG 1185
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1081 TGACCATGGCTTGTACAAGGAGCTTGACTTCAACACAAGATTCCACTATGCTTCACTATG 1140
Query 1186 GAAAGCATTGGTCTTTTCGGATGCTAAAGCCATTAAAGAACACAGTGAGAAATTAGGCGC 1245
|||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1141 GAAAGCGTTGGTCTTTTCGGATGCTAAAGCCATTAAAGAACACAGCGCGAAATTAGGCGC 1200
Query 1246 TGGAGATGATCTATACGTCCTATTCGCCGGGATACTTACAATGAGACCATGGAAGCAAGT 1305
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1201 TGGAGATGATCTATACGTGCTATTCGCGGGGATTCTTACAATGAGACCATGGAAGCAAGT 1260
Query 1306 CATCGACACATCTGTGGATCATTTAGTCATCCAAGGCAACAAAGAAGATGTATCAGAGCT 1365
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1261 CATTGACACATCTGTGGATCATTTAGTCATCCAAGGCAGCAAAGAAGATGTATCAGAGCT 1320
Query 1366 ACAGATGTATGCATCACAGTACTTCTCCGAAATCTCAGAGCTTCTCAGGAGATTGCCACG 1425
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1321 ACAGATGTATGCATCACAGTACTTCTCCGAAATCTCAGAGCTTCTGAGGAGATTGCCACG 1380
Query 1426 CGTGATCCTTCTGATGCTGAAAACAAACGACTGTCTCCGGTCAGTTAACAATGAGCTAAT 1485
||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1381 CGTAATCCTTCTGATGCTGAAAACAAACGACTGTCTGCGGTCGGTTAACAATGAACTAAT 1440
Query 1486 GCAAGGATCGTCTCTCGAGTCGTTCTTGATCATCGGGAAAGTATCTTCCCAAGCGGTTTT 1545
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1441 GCAAGGATCGTCGCTGGAGTCGTTCTTGATCATCGGGAAAGTATCTTCGCAAGCGGTTTT 1500
Query 1546 AGAGGCAAAGAGAG-CTGAAAAGAAATCGTTGATGAAATGGCTGAAGGTATGGTTTGAAG 1604
|||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1501 AGAGGCAAAGAG-GTCTGAAAAGAAATCGTTGATGAAATGGCTAAAGGTATGGCTTGAAG 1559
Query 1605 GGTTCTCTGTTGAAGCAAGGCTTTGGGTAATGCAATTTGCACTTTGGATCTTACAAGTCA 1664
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1560 GATTCTCTGTTGAAGCAAGGCTTTGGGTAATGCAATTTGCACTTTGGGTCTTACAAGTCA 1619
Query 1665 GAAAATCCTTAACCCTT-TAATATAAAACGTTCCTG--CCAATTTTATATTACACACCTC 1721
|||||||||||||| || | ||||| || || | | |||||| |||||||||| ||
Sbjct 1620 GAAAATCCTTAACC-TTATGATATATAATGT-CATAAACCAATTA-ATATTACACATCTT 1676
Query 1722 TCTCTATTCTTTGGTAAGTGGGTATCAAAAAATAACATTTATCATTCTTTGTATACTACA 1781
||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1677 TCTCTATTCTTTGGTAAGTGGGTTTCAAAAT-TAACATTTATCATTCTTTGTATACTACA 1735
Query 1782 CAAGGCTGTTATGTAACAAACCAATAAATCAACTTTATATATACTATGAGATTTGTATCA 1841
||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |
Sbjct 1736 CAAGGCTGTTATGTACCAAACCAATAAATCAACTTTATATGTACTATAAGATTTGTATTA 1795
Query 1842 TTTGTATGCTGGGAAGAGCTTATTACTTTA-AAtttttttttATATAAATCTTATTATCT 1900
||||||||||||||||||| ||||||||| ||| ||| | ||||||||||||||| |||
Sbjct 1796 TTTGTATGCTGGGAAGAGCATATTACTTTTTAATATTTATATATATAAATCTTATTGTCT 1855
Query 1901 TC 1902
||
Sbjct 1856 TC 1857
> Ahg944776 jgi|Araly1|944776|scaffold_701005.1
Length=374
Score = 104 bits (56), Expect = 2e-21
Identities = 74/82 (90%), Gaps = 4/82 (5%)
Strand=Plus/Minus
Query 1318 TGTGGATCATTTAGTCATCCAAGGCAACAAAGAAGATGTATCAGAGCTACAGATGTATGC 1377
||||||||||| |||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 78 TGTGGATCATTAAGTC--GC--GGCAACAAAGAAGATGTATCAGAGCTACATATGTATGC 23
Query 1378 ATCACAGTACTTCTCCGAAATC 1399
||||||||| ||||||||||||
Sbjct 22 ATCACAGTATTTCTCCGAAATC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71495389865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5