BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40090.1 Length=1903 Score E Sequences producing significant alignments: (Bits) Value Ahg483048 jgi|Araly1|483048|fgenesh2_kg.4__2108__AT2G40090.1 2953 0.0 Ahg944776 jgi|Araly1|944776|scaffold_701005.1 104 2e-21 > Ahg483048 jgi|Araly1|483048|fgenesh2_kg.4__2108__AT2G40090.1 Length=1857 Score = 2953 bits (1599), Expect = 0.0 Identities = 1776/1862 (95%), Gaps = 10/1862 (1%) Strand=Plus/Plus Query 46 GCGTTCATTACGTGCTTCCTCAATGGCGGCACGATCCCTATGGAGAACCCGTACGAAGCT 105 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 GCGTTCATTACGTGCTTCCTCAATGGCGGCACGATCCCTTTGGAGAACCCGTACGAAGCT 60 Query 106 CCTCGTTGTTGGTACCGCCTTATGCGGTGGTTCCGGCGCCGCCTTCATTGCTTCCTCCGA 165 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CCTCGTTGTTGGTACCTCTTTATGCGGTGGTTCCGGCGCCGCCTTCATTGCTTCCTCCGA 120 Query 166 TGACCCATCAACAACCCTCAAGCTTTGCACCTCCATCCCCGTTCGTCTCTACCGCAATAC 225 |||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 121 TGACCCATCAACCACCCTCAAGCTTTGCACCTCCATCCCCGTCCGCCTCTACCGCAATAC 180 Query 226 CGTTACCGCCGCCTCTATTGCTTTCGATTATGAGTACTCGTTGTTGGGTTTGGCTGAGGG 285 |||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| Sbjct 181 CGTTACCGCCGCCTCTATCGCTTTCGATTATGAATACTCATTGTTGGGTTTGGCTGAGGG 240 Query 286 AAGCAGTGAGAGAGCTAAGGTCAAACATGAAGTCCACCTAAGGTCAGCTCAAAAGCTTCA 345 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAGCAGTGAGAGGGCTAAGGTCAAACATGAAGTCCACCTAAGGTCAGCTCAAAAGCTTCA 300 Query 346 AGAGCTCTGTTTTAAAAATGGAGGAATCTATATCAAACTCGGCCAACATATAGGACAACT 405 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGAGCTTTGTTTCAAAAATGGAGGAATCTATATCAAACTCGGCCAACATATAGGACAACT 360 Query 406 AGAATATCTTGTGCCTGAAGAGTATGTTCGTACTATGAGGGAGTCCATGTTGAACAAATG 465 ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| Sbjct 361 TGAATATCTTGTGCCTGAAGAGTATGTTTGTACTATGAGAGAGTCCATGTTGAACAAATG 420 Query 466 CCCTATTTCTTCATATGAGCAAGTATGTGAGGTTTTTAAGAAAGAGGTTGGAGAGATGCC 525 |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 421 CCCTGTTTCTTCGTATGAGCAAGTATGTGAGGTTTTCAAGAAAGAGGTTGGAGAGATGCC 480 Query 526 AGACCAAGTATTTGCTGAATTTGACCCTGTTCCAATTGCAAGTGCTTCCCTTGCTCAAGT 585 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 AGACAAAGTATTTGCTGAATTTGACCCTGTTCCAATTGCAAGTGCTTCCCTTGCTCAAGT 540 Query 586 TCATGTTGCTCGCACTCATGATGGAAAAAAGGTTGCTGTCAAGGTTCAACATGCGCACAT 645 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| Sbjct 541 TCATGTTGCTCGCACCCATGATGGAAAAAAAGTTGCTGTCAAGGTTCAACATGCGCACAT 600 Query 646 GACAGACACTGCAGCTGCGGACACTGCAGCTGTTGGAGTTTTAGTGAATACCTTGCACCG 705 |||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||| | Sbjct 601 GACAGACACTGCTGCTGCGGACACTGCTGCTGTGGGAGTTTTAGTGAACACCTTGCACAG 660 Query 706 AATATTCCCATCATTTGACTATAGGTGGTTGCTCGACGAAATGAGTGAAAGCTTACCAAA 765 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 661 GATATTCCCATCATTTGACTATAGGTGGTTGCTAGACGAAATGAGTGAAAGCTTACCAAA 720 Query 766 GGAACTAGATTTTTTGGTTGAGGCGAAAAACAATGAGAAATGTCTGGATAATTTTAGGAA 825 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 721 GGAACTAGATTTTTTGGTTGAGGCAAAAAACAATGAGAAATGTCTGGATAATTTTAGGAA 780 Query 826 GCTGTCTCCCCATATTGCAGAGTATGTTTATGCGCCAACAATCTATTGGAATTTGAGTAC 885 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GCTGTCTCCCCATATTGCAGAGTATGTTTATGCGCCAACAATCTATTGGAATTTGAGTAC 840 Query 886 CTCTAAGTTGTTGACAATGGAGTTCATGGATGGTGCTCAAGTGAACGATGTTGATAAGAT 945 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 841 CTCTAAGTTGTTGACAATGGAGTTCATGGATGGTGCTCAAGTGAACGATGTTGCTAAGAT 900 Query 946 CAGAAAGCTTGGGATTCAGCCCTATGAAGTATCAAAGCTCGTGAGTCAAACATTTGCAGA 1005 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 901 CAGAAAGCTTGGGATTCAGCCCTATGAAGTATCAAAGCTTGTGAGTCAAACTTTTGCAGA 960 Query 1006 AATGATGTTTAAACATGGGTTTGTGCACTGTGACCCACACGCTGCCAATTTGATTGTTCG 1065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 AATGATGTTTAAACATGGGTTTGTGCACTGTGACCCACACGCTGCCAATTTGATTGTTCG 1020 Query 1066 TCCAGATCCTTCTGGTAAGAGGAACATATATGGCAAGAGAAAACCGCAATTAGTGATTCT 1125 |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| Sbjct 1021 TCCAGATCCTTCTGGTAAAAGGAACATATATGGCAAGAGAAAACCGCAACTAGTGATTCT 1080 Query 1126 TGACCATGGCTTGTACAAGGAGCTTGACTTCAACACAAGATTCAACTATGCTTCACTGTG 1185 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 1081 TGACCATGGCTTGTACAAGGAGCTTGACTTCAACACAAGATTCCACTATGCTTCACTATG 1140 Query 1186 GAAAGCATTGGTCTTTTCGGATGCTAAAGCCATTAAAGAACACAGTGAGAAATTAGGCGC 1245 |||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1141 GAAAGCGTTGGTCTTTTCGGATGCTAAAGCCATTAAAGAACACAGCGCGAAATTAGGCGC 1200 Query 1246 TGGAGATGATCTATACGTCCTATTCGCCGGGATACTTACAATGAGACCATGGAAGCAAGT 1305 |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 1201 TGGAGATGATCTATACGTGCTATTCGCGGGGATTCTTACAATGAGACCATGGAAGCAAGT 1260 Query 1306 CATCGACACATCTGTGGATCATTTAGTCATCCAAGGCAACAAAGAAGATGTATCAGAGCT 1365 ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1261 CATTGACACATCTGTGGATCATTTAGTCATCCAAGGCAGCAAAGAAGATGTATCAGAGCT 1320 Query 1366 ACAGATGTATGCATCACAGTACTTCTCCGAAATCTCAGAGCTTCTCAGGAGATTGCCACG 1425 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1321 ACAGATGTATGCATCACAGTACTTCTCCGAAATCTCAGAGCTTCTGAGGAGATTGCCACG 1380 Query 1426 CGTGATCCTTCTGATGCTGAAAACAAACGACTGTCTCCGGTCAGTTAACAATGAGCTAAT 1485 ||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| Sbjct 1381 CGTAATCCTTCTGATGCTGAAAACAAACGACTGTCTGCGGTCGGTTAACAATGAACTAAT 1440 Query 1486 GCAAGGATCGTCTCTCGAGTCGTTCTTGATCATCGGGAAAGTATCTTCCCAAGCGGTTTT 1545 |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1441 GCAAGGATCGTCGCTGGAGTCGTTCTTGATCATCGGGAAAGTATCTTCGCAAGCGGTTTT 1500 Query 1546 AGAGGCAAAGAGAG-CTGAAAAGAAATCGTTGATGAAATGGCTGAAGGTATGGTTTGAAG 1604 |||||||||||| | |||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 1501 AGAGGCAAAGAG-GTCTGAAAAGAAATCGTTGATGAAATGGCTAAAGGTATGGCTTGAAG 1559 Query 1605 GGTTCTCTGTTGAAGCAAGGCTTTGGGTAATGCAATTTGCACTTTGGATCTTACAAGTCA 1664 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1560 GATTCTCTGTTGAAGCAAGGCTTTGGGTAATGCAATTTGCACTTTGGGTCTTACAAGTCA 1619 Query 1665 GAAAATCCTTAACCCTT-TAATATAAAACGTTCCTG--CCAATTTTATATTACACACCTC 1721 |||||||||||||| || | ||||| || || | | |||||| |||||||||| || Sbjct 1620 GAAAATCCTTAACC-TTATGATATATAATGT-CATAAACCAATTA-ATATTACACATCTT 1676 Query 1722 TCTCTATTCTTTGGTAAGTGGGTATCAAAAAATAACATTTATCATTCTTTGTATACTACA 1781 ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 1677 TCTCTATTCTTTGGTAAGTGGGTTTCAAAAT-TAACATTTATCATTCTTTGTATACTACA 1735 Query 1782 CAAGGCTGTTATGTAACAAACCAATAAATCAACTTTATATATACTATGAGATTTGTATCA 1841 ||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| | Sbjct 1736 CAAGGCTGTTATGTACCAAACCAATAAATCAACTTTATATGTACTATAAGATTTGTATTA 1795 Query 1842 TTTGTATGCTGGGAAGAGCTTATTACTTTA-AAtttttttttATATAAATCTTATTATCT 1900 ||||||||||||||||||| ||||||||| ||| ||| | ||||||||||||||| ||| Sbjct 1796 TTTGTATGCTGGGAAGAGCATATTACTTTTTAATATTTATATATATAAATCTTATTGTCT 1855 Query 1901 TC 1902 || Sbjct 1856 TC 1857 > Ahg944776 jgi|Araly1|944776|scaffold_701005.1 Length=374 Score = 104 bits (56), Expect = 2e-21 Identities = 74/82 (90%), Gaps = 4/82 (5%) Strand=Plus/Minus Query 1318 TGTGGATCATTTAGTCATCCAAGGCAACAAAGAAGATGTATCAGAGCTACAGATGTATGC 1377 ||||||||||| |||| | ||||||||||||||||||||||||||||| |||||||| Sbjct 78 TGTGGATCATTAAGTC--GC--GGCAACAAAGAAGATGTATCAGAGCTACATATGTATGC 23 Query 1378 ATCACAGTACTTCTCCGAAATC 1399 ||||||||| |||||||||||| Sbjct 22 ATCACAGTATTTCTCCGAAATC 1 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71495389865 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5