BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40095.1
Length=1217
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483049 jgi|Araly1|483049|fgenesh2_kg.4__2109__AT2G40095.1 1397 0.0
> Ahg483049 jgi|Araly1|483049|fgenesh2_kg.4__2109__AT2G40095.1
Length=1086
Score = 1397 bits (756), Expect = 0.0
Identities = 900/967 (93%), Gaps = 19/967 (2%)
Strand=Plus/Plus
Query 85 ATGGGTTTTAGCAAAGAAGAGATTAGTAAAACCAGAAAGCTTTGGTCATCTCTATGGAGA 144
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 19 ATGGGTTTTAGCAAAGAAGAGATTAGTAAAACCAGAAAGCTTTCGTCATCTCTATGGAGA 78
Query 145 GGAATCAAAACTATATTCGTTTTGTTCACAATGTTCTTCTCTTTTCTCCTTGTCTCTGCT 204
|| ||||||| | ||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 79 GGTATCAAAATTGTATTCGTTTTGTTCACAATGTTCCTCTCTTTTCTCCTCGTCTCTGCT 138
Query 205 CCTATCTTCCTCGCCGTCGCCGATGctctcctcccttccgctctcctccaccgcttctct 264
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 139 CCAATCTTCCTCGCCGTCGCCGATGCTCTCCTCCCTTCGGCTCTCCTCCACCGCTTCTCT 198
Query 265 tcgccggcgactctctcttctcatctcACCAACTACGATTTCCGTCACTCCCTCATCGAT 324
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 199 TCGCCGGCGAATCTCTCTTCTCATCTCACCAACTACGATTTCCGTCACTCTCTCATCGAT 258
Query 325 ATTCCTTTAATCTCAATCATTAGATCCGCTGTTATACTCTGTGTTTATGGACTCTGTGAC 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ATTCCTTTAATCTCAATCATTAGATCCGCTGTTATACTCTGTGTTTATGGACTCTGTGAT 318
Query 385 GGACCAAAACTATCGAGAGGACCGTATCTGACAATAACAATGATTTGTTCAATATCTTCT 444
|||||||||||||| |||||||||||||||||| | || |||||||| ||| | || |||
Sbjct 319 GGACCAAAACTATCTAGAGGACCGTATCTGACAGTCACCATGATTTGCTCAGTTTCGTCT 378
Query 445 CTAATCTACGTTTCGTTAAAAGCTGCGTTTGTGTTCGGTGAGCCAG-CGATCGGAGACGG 503
||| |||||||||||||||||||||||||||||||||| ||||| | | |||||||||||
Sbjct 379 CTAGTCTACGTTTCGTTAAAAGCTGCGTTTGTGTTCGGCGAGCC-GTCCATCGGAGACGG 437
Query 504 AGGAGGAAACTACTTCAGAGCGGCGGAAGTGGCTCTGTTTCTATGCTCGTCAGTCTTAGC 563
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 438 CGGAGGAAACTACTTCAGAGCGGCGGAAGTGGCTCTGTTTCTCTGCTCGTCAGTCTTAGC 497
Query 564 CATAGGTCACATCGTTGTGGCTTATCGAACAAGTTGTAGAGAAAGAAAAAAGCTTCTCGT 623
||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 498 CATAGGTCACATCATTGTGGCGTATCGAACAAGTTGTAGAGAAAGAAAAAAGCTTCTCGT 557
Query 624 CTTCAAAATCGACATTGAAGCCGTTTCGGCTTGTAAAAACGTGTACCCGAGATACCAAAA 683
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 558 CTTCAAAATCGACATTGAAGCCGTTTCGGCTTGTAAAAACGTTTACCCGAGATACCAAAA 617
Query 684 GATCTTATTACAACAAGAGAGACTCAAATAGAGACGTATTTCCAAGAGAATCAATACTTG 743
||| | | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 618 GAT-TC-T-ACAACAAGAGAGACTCAAATAGAGACGTATTTTCAAGAGAATCAATACTTA 674
Query 744 TAAATATATACACATACCTCAACATGTAAATAAAACTAATATATAAAAACATACGGCGTA 803
||||||| |||||||||||||||||||||||| || || ||| || ||| ||
Sbjct 675 TAAATATGTACACATACCTCAACATGTAAATATAA--AA-ATA------CA-ACG---TA 721
Query 804 TAAATGTAACTTCTCCTTCTGCCTTTCGGCGTTGACCCATCAACTCCTTCGCTTTTAAGT 863
|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 722 TAAATGTAGCTTCTTCTTCTGCCTTTCGGTGTTGACCCATCAACTCCTTCGCTTTTAAGT 781
Query 864 TTCAGAAGGATCCAAAGCAAAAGGAATGGAGATTAATTATATAACCTATGCTTTTTTAAA 923
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 782 TTCAGAAGGATCCAAAGCGAAAGGAATGAAGATTAATTATATAACCTATGCTTTTTTAAA 841
Query 924 -TGAGACATTTCAGATGAACTGGCAGTTGTTAGCTTTAACATTATATTAGTTAGGGCGAT 982
||||||| |||||| ||||||||| | ||||||||||||||| |||||| ||||||||
Sbjct 842 ATGAGACAACTCAGATCAACTGGCAGATATTAGCTTTAACATTAGATTAGTAAGGGCGAT 901
Query 983 TTGTAAATAATCCAGAGTTCCTCAATGAGAAAAGAAGCCCAAGGCTGTCTCTCCgttttg 1042
|||| ||||||||||||||| | ||||||||||||||||||||||||||||||| |||||
Sbjct 902 TTGTGAATAATCCAGAGTTCATTAATGAGAAAAGAAGCCCAAGGCTGTCTCTCCATTTTG 961
Query 1043 tatatat 1049
|||||||
Sbjct 962 TATATAT 968
Score = 121 bits (65), Expect = 2e-26
Identities = 96/109 (88%), Gaps = 9/109 (8%)
Strand=Plus/Plus
Query 1104 taaGCATAAGCACATAGTA---TG--TG--ATACGTCCGCGTGGATTTCTTTATACGTCA 1156
||||||||||||||||||| || || ||| ||||||||| || |||||||||||||
Sbjct 979 TAAGCATAAGCACATAGTATGCTGTATGTCATATGTCCGCGTGAATGTCTTTATACGTCA 1038
Query 1157 CCAAA-ATCTCTAATAGAATCGTAAAGCAACCTTTTTACGATCATTATC 1204
||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1039 CCAAATAT-TCTAAAAGAATCGTAAAGCAACCTTTTTACGATCATTATC 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45442517064
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5