BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40100.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483050 jgi|Araly1|483050|fgenesh2_kg.4__2110__AT2G40100.1 1548 0.0
> Ahg483050 jgi|Araly1|483050|fgenesh2_kg.4__2110__AT2G40100.1
Length=1017
Score = 1548 bits (838), Expect = 0.0
Identities = 965/1024 (94%), Gaps = 18/1024 (2%)
Strand=Plus/Plus
Query 1 ACTATTATTCTAAAATCC----aa--aaaaa-CTATATGTTAT-AACATTGGAATCATCA 52
|||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct 1 ACTATTATTCTAAAATCCAAAAAATCAAAAACCTATATGTTATAAACATTGGAATCATCA 60
Query 53 GTCTCTAAGCAGTATCACACCAACTCAATATGGCTACCACCACTGCAGCAGCAGCCTCAG 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCTCTAAGCAGTATCACACCAACTCAATATGGCTACCACCACTGCAGCAGCAGCCTCAG 120
Query 113 GTATTTTTGGGATCCGGATTCAAGATCCTAGACCTGGAACCGGTAGGGTCCAAGCCCGGT 172
|||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 121 GTATCTTTGGGATCCGGATTCAAGATCCTAGACTTGGAACCGGTAGGATCCAAGCCCGGT 180
Query 173 TCGGGTTCAGTTTCGGAAAAAAGAAACCGGCTCCACCGCCAAAGAAATCAAGGCAGGTCC 232
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 TCGGGTTCAGTTTCGGGAAAAAGAAACCGGCTCCACCACCAAAGAAATCAAGGCAGGTCC 240
Query 233 AAGACGATGGAGACAGACTAGTTTGGTTCCCCGGCGCAAACCCGCCGGAATGGTTGGACG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAGACGATGGAGACAGACTAGTTTGGTTCCCCGGCGCAAACCCGCCGGAATGGTTGGACG 300
Query 293 GATCGATGATCGGAGACCGTGGATTTGATCCGTTTGGTTTAGGTAAACCGGCTGAGTATC 352
||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 301 GATCGATGATCGGTGACCGTGGATTTGATCCGTTCGGTTTAGGTAAACCGGCGGAGTATC 360
Query 353 TTCAGTACGATTTCGATGGACTTGACCAAAACCTTGCCAAGAACGTGGCGGGTGACATCA 412
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCAGTACGATTTCGACGGTCTTGACCAAAACCTTGCCAAGAACGTGGCGGGTGACATCA 420
Query 413 TCGGGATCATCCAAGAATCTTCGGAGATCAAACCGACGCCGTTTCAGCCGTACACTGAAG 472
|||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct 421 TCGGGATCATCCAAGACTCGTCTGAGATCAAACCCACGCCGTTTCAGCCGTACACTGAAG 480
Query 473 TCTTTGGGATCCAACGGTTCAGAGAATGTGAGCTGATCCATGGAAGGTGGGCCATGCTTG 532
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 TCTTTGGGATCCAACGGTTCAGAGAATGTGAGCTGATTCATGGAAGGTGGGCCATGCTTG 540
Query 533 GCACTCTAGGCGCCATCGCCGTAGAGGCTCTTACAGGAATTGCATGGCAAGACGCCGGAA 592
|||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 541 GCACTCTAGGTGCCATCGCCGTTGAGGCTCTCACCGGAATTGCATGGCAAGACGCCGGAA 600
Query 593 AGGTGGAATTGGTGGAAGGATCATCGTATTTGGGACAACCATTGCCGTTCTCGTTGACGA 652
|||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||
Sbjct 601 AGGTGGAATTGGTGGAAGGATCGTCGTATTTGGGACAGCCATTGCCATTCTCTTTGACGA 660
Query 653 CGTTGATATGGATAGAAGTGTTAGTGGTCGGATACATTGAGTTCCAACGTAACTCTGAAC 712
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 661 CGTTGATATGGATAGAAGTGCTAGTGGTCGGATACATTGAGTTCCAACGTAACTCTGAGC 720
Query 713 TGGATCCAGAGAAACGGATTTACCCGGGTGGGTATTTTGACCCGTTGGGACTCGCGGCTG 772
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGATCCAGAGAAACGGATTTACCCGGGTGGGTATTTTGACCCGTTGGGACTCGCGGCTG 780
Query 773 ATCCAGAGAAGTTGGATACTTTGAAGCTGGCTGAGATAAAGCACTCTCGTCTCGCTATGG 832
|||||||||||||||| || |||||| |||| ||||||||||||||||||||||||||||
Sbjct 781 ATCCAGAGAAGTTGGACACCTTGAAGTTGGCGGAGATAAAGCACTCTCGTCTCGCTATGG 840
Query 833 TCGCATTTCTCATCTTTGCTCTTCAGGCGGCCTTTACCGGCAAAGGCCCTGTCAGCTTCC 892
| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 TTGCATTTCTTATCTTTGCTCTTCAGGCGGCCTTTACCGGCAAAGGCCCTATCAGCTTCC 900
Query 893 TTGCCACCTTTAACAATTAGTTAATGAACCTTTCTATCTTTA-TTTTATCAAAATAAAAT 951
| |||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct 901 TCGCCACCTTTAACAATTAGTTAATGAACCTTTCTATCTTTACTTTTTTCAAAAAAAAAA 960
Query 952 -TATAC-TTCAAAAACTGTATAATGCATGTTACGCTATACTTATAAAGAAGTCTTTTATT 1009
||||| || ||||||| ||| |||||||||| ||| | ||||| ||||| ||||||
Sbjct 961 ATATACGTT-AAAAACTCTATGATGCATGTTA---TAT-C--ATAAATAAGTCGTTTATT 1013
Query 1010 GTTT 1013
||||
Sbjct 1014 GTTT 1017
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5