BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G40110.1

Length=800
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934793 jgi|Araly1|934793|scaffold_402781.1                        715    0.0  


> Ahg934793 jgi|Araly1|934793|scaffold_402781.1
Length=434

 Score =  715 bits (387),  Expect = 0.0
 Identities = 414/427 (97%), Gaps = 1/427 (0%)
 Strand=Plus/Plus

Query  199  TGTTCTTGATTTTGATTCAAGATGGGGAGGCTGTTTGTGGTGAATCTTGAAGGGAAGATC  258
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1    TGTTCTTGA-TTTGATTCAAGATGGGGAGGCTGTTTGTGGTTAATCTTGAAGGGAAGATC  59

Query  259  TATAGCTGCAAACACTGTAAGACTCATCTTGCTACTTATGAAGACATCATCTCCAAGTCT  318
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TATAGCTGCAAACACTGTAAGACTCATCTTGCTACTTATGAAGACATCATCTCCAAGTCT  119

Query  319  TTTCACTGCAAGCATGGGAAAGCTTATCTCTTCAATAAGGTTGCCAATGTTTCCATTGGA  378
            |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  120  TTTCACTGCAAGCATGGGAAGGCTTATCTCTTCAATAAGGTTGCCAATGTTTCAATTGGA  179

Query  379  GAGACTGAAGAAAGACTGATGATGACTGGTAAACATACTGTGGCTGATATTTTCTGTGTC  438
            ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct  180  GAGACTGAAGAAAGACTGATGATGACTGGAAAACATACTGTGGCTGACATTTTCTGTGTC  239

Query  439  TCGTGTGGATCAATCGTTGGCTGGAAATACGAGACTGCTCATGAGAAGAACCAGAAGTAC  498
            ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct  240  TCGTGTGGATCAATCGTTGGCTGGAGATACGAGACTGCTCATGAGAAGAATCAGAAGTAC  299

Query  499  AAAGAAGGAAAATCAGTGCTTGAAAGATTTAAGATATCGGGTCCTGATGGGAGCAACTAT  558
            || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  AAGGAAGGAAAATCTGTTCTTGAAAGATTTAAGATATCGGGTCCTGATGGGAGCAACTAT  359

Query  559  TGGGTGAGTAGCCATGGAAGGCATATAGGTGGAAGTGATGCAGATGATGCTTGAATCAtc  618
            ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  360  TGGGTGAGTAGTCATGGAAGGCATATTGGTGGAAGTGATGCAGATGATGCTTGAATCATC  419

Query  619  tctctct  625
            |||||||
Sbjct  420  TCTCTCT  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29545260675


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5