BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40113.1
Length=907
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483053 jgi|Araly1|483053|fgenesh2_kg.4__2113__AT2G40113.1 1140 0.0
> Ahg483053 jgi|Araly1|483053|fgenesh2_kg.4__2113__AT2G40113.1
Length=867
Score = 1140 bits (617), Expect = 0.0
Identities = 808/892 (91%), Gaps = 45/892 (5%)
Strand=Plus/Plus
Query 1 GACCAAACCCACAAAAGTCAGTTGATCAGTCTTCTCTGTGATGGTAGGCTTGTTTCTTCA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GACCAAACCCACAAAAGTCAGTTGATCAGTCTTCTCTGTGATGGTAGGCTAGTTTCTTCA 60
Query 61 TTTTCTGCTAACTACTACACTTTTCCCCAAAGTGTAGTTAGCTGAGATAACACATTGAGG 120
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTCCTGCTAACTACTACACTTTTCCCCAAAGTGTAGTTAGCTGAGATAACACATTGAGA 120
Query 121 TCCAAACAAATAATAAGCGAATGGAGTTGGACAAATTGACAATTTTCTCTCCTTAAATCC 180
| |||||||||| | |||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 121 TTAAAACAAATAACAGGCGAATGGAGTTGGACAAGTTGACTATTTGCTCTCCTTAAATCC 180
Query 181 ATCCTCTTCACACACATCATTCTT-------A---ACCTATATTGAGATATGGAGAGCTT 230
|||||||||||||||||||||||| | || |||||||||| |||||||||||
Sbjct 181 ATCCTCTTCACACACATCATTCTTAAAGAAAAGTGACATATATTGAGACATGGAGAGCTT 240
Query 231 CTTTATCATCCGTTGCTTCTTGTTA-T-T-ATTCTTCTTCTTCAACGGAGCATTTGCAGC 287
||||||| ||||||||||||||||| | | ||||||||||||||||||||||| ||||
Sbjct 241 CTTTATCCTCCGTTGCTTCTTGTTACTCTCCTTCTTCTTCTTCAACGGAGCATTCACAGC 300
Query 288 TTCAAGTAAGTTATGGAGCATAAGAGAGATGTCGGATATGGCTGGCTACGGGGAACACAA 347
|||||| ||||||||||||||||| ||||||||||||||||||||||| || ||||||||
Sbjct 301 TTCAAGCAAGTTATGGAGCATAAGGGAGATGTCGGATATGGCTGGCTATGGCGAACACAA 360
Query 348 ACTCTCATCCGTAGTTATCACCGGTTCTCTTCTTTGCAACACCCCTGTTTCAGGTGCAAC 407
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 361 ACTCTCATCCGTAGTTATCACCGGGTCTCTTCTTTGCAACACCCCTATTTCAGGTGCAAC 420
Query 408 TGTTGCCATCAAGTGTCACACTGGACT-AAAACAGAGATCAAAATGGAT-AAAGAGTGTT 465
||||||||| ||||||||||||||| | ||| |||||||||||||||| |||| |||||
Sbjct 421 TGTTGCCATTAAGTGTCACACTGGATTCCAAA-AGAGATCAAAATGGATAAAAG-GTGTT 478
Query 466 ACTAATGACTTTGGAGAATTTGTCATCCATCTTCCTTCTCATCTTCACGCAATTCCGCAA 525
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACTAATGACTTTGGAGAGTTTGTCATCCATCTTCCTTCTCATCTTCACGCAATTCCGCAA 538
Query 526 CTCGAAAAAGCATGTTTCGTCAAACCAATACATGTGCCTAAGCACTATCACAGATGTTAC 585
|||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||
Sbjct 539 CTCGAAAAAGCATGTTTCATCAAACCAATACATGTTCCTAAGCACTATCACAAATGTTAT 598
Query 586 CACACTTTTTCCAAATCCAATATACACAAAGACATCAAACTTGTTTCCTCGAGAAATGGC 645
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 599 CACACTTTTTCCAAATCCAATATACACAAAGGCATCAAACTTGTTTCCTCCAGAAATGGC 658
Query 646 TTCCGTGTCTACACCTCAGGGACTATCAAGTTACATGGAGGACACAGTTCAAGAACATCC 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TTCCGTGTCTACACCTCAGGGACTATCAAGTTACATGGAGGACACAGTTCAAGAACATCC 718
Query 706 CAAC--C-TCATAAAGCCAACATGTAAACACAAGTTTAAAGAAAAACAAAACAGAACACT 762
|||| | ||||||||||||||||||||| | ||| || | |
Sbjct 719 CAACAACCTCATAAAGCCAACATGTAAAC-----T-----------CAA----GA-C--T 755
Query 763 TGAAGATTCATCTTGTGTTTTTGTGTTCCTCTCACTT-GTTTAGGTTGGCGCTTCAGTCA 821
||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||
Sbjct 756 TGAAGATTCATCTTGTGTTATTGTGTTTCTCTCACTTTGTTTAGGTTGGCGCTTCAGTCA 815
Query 822 CCGAACCGAGTTGAGTCTCTTCACATTGTT-ATCGGTTTCAAACAGTGTAAT 872
| |||||||||||||||||| |||||||| ||| |||||| ||||||||||
Sbjct 816 CATAACCGAGTTGAGTCTCTTTACATTGTTTATCAGTTTCACACAGTGTAAT 867
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33624412794
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5