BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40116.1 Length=2134 Score E Sequences producing significant alignments: (Bits) Value Ahg934795 jgi|Araly1|934795|scaffold_402783.1 3055 0.0 > Ahg934795 jgi|Araly1|934795|scaffold_402783.1 Length=1899 Score = 3055 bits (1654), Expect = 0.0 Identities = 1822/1901 (96%), Gaps = 19/1901 (1%) Strand=Plus/Plus Query 48 AAACCCTAAAAGTTATTAACAATGGGGAAGGAGAAGAAAACAGAGTCGTATAATAACGAT 107 ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAACCCTAAGTTTTAAAAACAATGGGGAAGGAGAAGAAAACAGAGTCGTATAATAACGAT 60 Query 108 AGCGGTAGTTACAATTAC-AGAATGTTCAAAT-TTTATAACCGTAAATTCAAGATCAACG 165 |||||||||||||||||| || |||||||||| ||| |||||||||||||||||||||| Sbjct 61 AGCGGTAGTTACAATTACAAG-ATGTTCAAATGTTT-CAACCGTAAATTCAAGATCAACG 118 Query 166 AAGTCACACCCACCGACGACGTCCGTGACGCTTTTTGTCAATTCGCCGTCGGTGGCGGTG 225 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 119 AAGTCACACCTACCGACGACGTCCGTGACGCTTTTTGTCAATTCGCCGTCGGTGGCGGCG 178 Query 226 GTGGAGGA--A--C----C-GATGGAGATTCAAGTGATGGTGACGGATCAACCGGTGTAA 276 |||||||| | | | || |||||||||||||| || ||||||||| ||||||||| Sbjct 179 GTGGAGGAGGAGGCGGAACAGACGGAGATTCAAGTGACGGAGACGGATCATCCGGTGTAA 238 Query 277 TGGGTGCAGAGCAGCTTTGTTCTTTCCTCGATG---ATCACGGTGAGTC---AACAACCG 330 |||||||||||||||| ||||||||||| |||| |||| ||||| || ||| |||| Sbjct 239 TGGGTGCAGAGCAGCTCTGTTCTTTCCTTGATGACCATCAAGGTGAATCAGGAACCACCG 298 Query 331 TCGCGGAGGCTCAACGGTTGATCGATGAGGTTATACGACGGAGACACCACGTCACGCGCT 390 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 299 TCGCGGAGGCTCAACGGTTAATCGATGAGGTTATACGACGGCGACACCACGTCACGCGCT 358 Query 391 TCACGCGCCACGGACTTGACCTCGACGATTTCTTCAATTTCTTATTTTACGACGATCTCA 450 ||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||||||| Sbjct 359 TCACGCGCCACGGACTTGATCTCGACGATTTCTTCAATTTCCTCTTTTACGAGGATCTCA 418 Query 451 ATCCTCCCATTACCCCTCACGTGCATCAAGATATGACAGCTCCATTGTCACATTACTTTA 510 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 419 ATCCTCCCATTACGCCTCACGTGCATCAAGATATGACAGCTCCATTGTCACATTACTTCA 478 Query 511 TATACACAGGACACAATTCGTATCTTACGGGGAATCAACTAAGCAGCGATTGTAGCGAAG 570 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 479 TATACACAGGACACAATTCGTATCTTACGGGTAATCAACTAAGCAGCGATTGTAGCGAAG 538 Query 571 TCCCTGTGATCAAAGCCTTGCAACGAGGCGTTCGAGTCATCGAGCTCGATCTTTGGCCTA 630 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 539 TCCCTGTGATCAAAGCCTTGCAAAGAGGCGTTCGAGTCATCGAGCTCGATCTTTGGCCTA 598 Query 631 ACTCTACTGGGACAGATATCAATGTCCTTCACGGAAGAACGCTTACAACGCCTGTACCGC 690 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 599 ACTCTACTGGAACAGATATCAATGTCCTTCACGGAAGAACGCTTACAACACCTGTACCGC 658 Query 691 TGATGAAATGCTTGAAATCGATAAGAGATTACGCGTTTTCTAGTTCGCCTTATCCGGTTA 750 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 659 TGATCAAATGCTTGAAATCGATAAGAGATTACGCGTTTTCTAGTTCGCCTTATCCGGTTA 718 Query 751 TCATCACTTTAGAGGATCATCTTACACCTGATCTTCAAGCCAAAGTTGCTGAGATGGCTA 810 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TTATCACTTTAGAAGATCATCTTACACCTGATCTTCAAGCCAAAGTTGCTGAGATGGCTA 778 Query 811 CACAGATATTTGGGCAGATGTTGTATTACCCTGAATCAGATAGCTTACTGGAATTTCCTT 870 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 779 CACAGATATTTGGGCAGATGTTGTATTACCCTGAATCAGATAGCTTAGTGGAATTTCCTT 838 Query 871 CTCCTGCTTCACTGCTTCATCGGATAATCATCTCCACCAAACCGCCTAAAGAATATCTCG 930 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 839 CTCCTGCTTCACTGCTTCATCGGATAATCATCTCAACCAAACCGCCTAAAGAGTATCTCG 898 Query 931 AATCGAGGAACCCGATTGTTAAACAAAAGGATAATAATGTATCTCCATCTTCAGAGGATG 990 |||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||| | Sbjct 899 AATCGAGGAATCCGATTGTTAAACAGAAGGATAATAATGTATCTCCATCGTCCGAGGAAG 958 Query 991 AAACACCTAGAACAGAGGAGATTCAGACCCTAGAAAGTATGTTGTTTGACCAAGATTTTG 1050 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 959 AAACACCTAGAACAGAGGAGATTCAGACACTAGAAAGTATGTTGTTTGACCAAGATTTTG 1018 Query 1051 AAAGCAAGAGTGATAGTGATCAAGAGGATGAAGAGGCTAGTGAAGATCAGAAACCTGCAT 1110 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 AAAGCAAGAGTGATAGTGATCAAGAGGATGAAGAGGCTAGTGAAGATCAGAAACCTGCAT 1078 Query 1111 ACAAACGGTTGATCACGATTCATGCTGGGAAACCAAAGGGAACGGTGAAAGAAGAGATGA 1170 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1079 ACAAACGGTTGATCACCATTCATGCAGGGAAACCAAAGGGAACGGTGAAAGAAGAGATGA 1138 Query 1171 AAGTTGTGGTTGATAAAGTGAGACGTTTGAGTTTAAGCGAGCAGGAACTTGACAGGACTT 1230 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1139 AAGTTGTGGTGGATAAAGTGAGACGTTTGAGTTTAAGCGAGCAGGAACTTGACAGGACTT 1198 Query 1231 GTTCATCTAATAGTCAGGATGTTGTAAGGTTTACGCAGCGGAATTTGCTTCGGATATACC 1290 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1199 GTTCATCCAATAGTCAGGATGTTGTAAGGTTTACACAGCGGAATTTGCTTCGGATATACC 1258 Query 1291 CTAAAGGGACAAGATTTAACTCCTCAAACTACAAACCTCTTATCGGTTGGACTCACGGAG 1350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 CTAAAGGGACAAGATTTAACTCCTCAAACTACAAACCTCTTATCGGTTGGACTCACGGAG 1318 Query 1351 CGCAAATGATTGCTTTCAACATGCAGGGATATGGGAAATCTCTGTGGTTGATGCACGGTA 1410 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1319 CGCAAATGATTGCATTCAACATGCAGGGATATGGGAAATCTCTGTGGTTGATGCACGGCA 1378 Query 1411 TGTTTAGAGCCAATGGAGGTTGTGGATATGTCAAAAAACCTAACTTCTTGATGAAGAAAG 1470 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1379 TGTTTAGAGCCAATGGAGGTTGTGGATATGTCAAGAAACCTAACTTCTTGATGAAGAAAG 1438 Query 1471 GGTTTCACGATGAAGTCTTTGACCCTAGGAAGAAACTCCCTGTTAAAGAAACGTTAAAGG 1530 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1439 GGTTTCACGACGAAGTCTTTGACCCTAGGAAGAAACTCCCTGTGAAAGAAACGTTAAAGG 1498 Query 1531 TGAAAGTGTATATGGGAGATGGATGGCGTATGGACTTCAGTCATACTCACTTTGATGCAT 1590 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 1499 TGAAAGTGTATATGGGAGATGGATGGCGTATGGACTTCAGTCACACTCACTTTGACGCAT 1558 Query 1591 ATTCTCCTCCTGATTTCTACACTAAGATGTTCATAGTGGGTGTACCAGCGGATAACGCGA 1650 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 ATTCTCCTCCTGATTTCTACACTAAGATGTTCATAGTGGGTGTACCAGCGGATAACGCGA 1618 Query 1651 AAAAGAAGACAAAAATAATCGAAGACAATTGGTATCCAATTTGGGATGAGGAATTCAGCT 1710 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 1619 AAAAGAAGACAAAAATAATCGAAGACAATTGGTATCCAATTTGGGATGAGGAATTTAGTT 1678 Query 1711 TCCCATTAACCGTTCCAGAGCTTGCATTGCTTAGGATCGAAGTAAGAGAGTATGATATGT 1770 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1679 TCCCATTAACCGTTCCAGAGCTTGCATTGCTTAGGATCGAAGTAAGAGAGTATGATATGT 1738 Query 1771 CGGAGAAGGATGATTTTGGTGGACAAACATGCTTGCCTGTTGCAGAGTTAAGACCAGGGA 1830 ||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| Sbjct 1739 CGGAGAAGGATGATTTTGGGGGACAAACATGCTTGCCTGTTGCAGAATTAAGACCGGGGA 1798 Query 1831 TTCGATCTGTGCCTTTGTATGACAAAAAGGGTGAGAAAATGAAATCAGTACGGCTTCTTA 1890 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1799 TTCGATCTGTGCCATTGTATGATAAAAAGGGTGAGAAAATGAAATCAGTACGGCTTCTTA 1858 Query 1891 TGCGTTTCATCTTCGAATGATTTGGCTTAACAGAAATGTGT 1931 ||||||||||||||||||||||||||||||||||||||||| Sbjct 1859 TGCGTTTCATCTTCGAATGATTTGGCTTAACAGAAATGTGT 1899 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80294236460 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5