BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40116.1
Length=2134
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934795 jgi|Araly1|934795|scaffold_402783.1 3055 0.0
> Ahg934795 jgi|Araly1|934795|scaffold_402783.1
Length=1899
Score = 3055 bits (1654), Expect = 0.0
Identities = 1822/1901 (96%), Gaps = 19/1901 (1%)
Strand=Plus/Plus
Query 48 AAACCCTAAAAGTTATTAACAATGGGGAAGGAGAAGAAAACAGAGTCGTATAATAACGAT 107
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAACCCTAAGTTTTAAAAACAATGGGGAAGGAGAAGAAAACAGAGTCGTATAATAACGAT 60
Query 108 AGCGGTAGTTACAATTAC-AGAATGTTCAAAT-TTTATAACCGTAAATTCAAGATCAACG 165
|||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||
Sbjct 61 AGCGGTAGTTACAATTACAAG-ATGTTCAAATGTTT-CAACCGTAAATTCAAGATCAACG 118
Query 166 AAGTCACACCCACCGACGACGTCCGTGACGCTTTTTGTCAATTCGCCGTCGGTGGCGGTG 225
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 119 AAGTCACACCTACCGACGACGTCCGTGACGCTTTTTGTCAATTCGCCGTCGGTGGCGGCG 178
Query 226 GTGGAGGA--A--C----C-GATGGAGATTCAAGTGATGGTGACGGATCAACCGGTGTAA 276
|||||||| | | | || |||||||||||||| || ||||||||| |||||||||
Sbjct 179 GTGGAGGAGGAGGCGGAACAGACGGAGATTCAAGTGACGGAGACGGATCATCCGGTGTAA 238
Query 277 TGGGTGCAGAGCAGCTTTGTTCTTTCCTCGATG---ATCACGGTGAGTC---AACAACCG 330
|||||||||||||||| ||||||||||| |||| |||| ||||| || ||| ||||
Sbjct 239 TGGGTGCAGAGCAGCTCTGTTCTTTCCTTGATGACCATCAAGGTGAATCAGGAACCACCG 298
Query 331 TCGCGGAGGCTCAACGGTTGATCGATGAGGTTATACGACGGAGACACCACGTCACGCGCT 390
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 299 TCGCGGAGGCTCAACGGTTAATCGATGAGGTTATACGACGGCGACACCACGTCACGCGCT 358
Query 391 TCACGCGCCACGGACTTGACCTCGACGATTTCTTCAATTTCTTATTTTACGACGATCTCA 450
||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||
Sbjct 359 TCACGCGCCACGGACTTGATCTCGACGATTTCTTCAATTTCCTCTTTTACGAGGATCTCA 418
Query 451 ATCCTCCCATTACCCCTCACGTGCATCAAGATATGACAGCTCCATTGTCACATTACTTTA 510
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 ATCCTCCCATTACGCCTCACGTGCATCAAGATATGACAGCTCCATTGTCACATTACTTCA 478
Query 511 TATACACAGGACACAATTCGTATCTTACGGGGAATCAACTAAGCAGCGATTGTAGCGAAG 570
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 479 TATACACAGGACACAATTCGTATCTTACGGGTAATCAACTAAGCAGCGATTGTAGCGAAG 538
Query 571 TCCCTGTGATCAAAGCCTTGCAACGAGGCGTTCGAGTCATCGAGCTCGATCTTTGGCCTA 630
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 539 TCCCTGTGATCAAAGCCTTGCAAAGAGGCGTTCGAGTCATCGAGCTCGATCTTTGGCCTA 598
Query 631 ACTCTACTGGGACAGATATCAATGTCCTTCACGGAAGAACGCTTACAACGCCTGTACCGC 690
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 599 ACTCTACTGGAACAGATATCAATGTCCTTCACGGAAGAACGCTTACAACACCTGTACCGC 658
Query 691 TGATGAAATGCTTGAAATCGATAAGAGATTACGCGTTTTCTAGTTCGCCTTATCCGGTTA 750
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGATCAAATGCTTGAAATCGATAAGAGATTACGCGTTTTCTAGTTCGCCTTATCCGGTTA 718
Query 751 TCATCACTTTAGAGGATCATCTTACACCTGATCTTCAAGCCAAAGTTGCTGAGATGGCTA 810
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTATCACTTTAGAAGATCATCTTACACCTGATCTTCAAGCCAAAGTTGCTGAGATGGCTA 778
Query 811 CACAGATATTTGGGCAGATGTTGTATTACCCTGAATCAGATAGCTTACTGGAATTTCCTT 870
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 779 CACAGATATTTGGGCAGATGTTGTATTACCCTGAATCAGATAGCTTAGTGGAATTTCCTT 838
Query 871 CTCCTGCTTCACTGCTTCATCGGATAATCATCTCCACCAAACCGCCTAAAGAATATCTCG 930
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 839 CTCCTGCTTCACTGCTTCATCGGATAATCATCTCAACCAAACCGCCTAAAGAGTATCTCG 898
Query 931 AATCGAGGAACCCGATTGTTAAACAAAAGGATAATAATGTATCTCCATCTTCAGAGGATG 990
|||||||||| |||||||||||||| ||||||||||||||||||||||| || ||||| |
Sbjct 899 AATCGAGGAATCCGATTGTTAAACAGAAGGATAATAATGTATCTCCATCGTCCGAGGAAG 958
Query 991 AAACACCTAGAACAGAGGAGATTCAGACCCTAGAAAGTATGTTGTTTGACCAAGATTTTG 1050
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 959 AAACACCTAGAACAGAGGAGATTCAGACACTAGAAAGTATGTTGTTTGACCAAGATTTTG 1018
Query 1051 AAAGCAAGAGTGATAGTGATCAAGAGGATGAAGAGGCTAGTGAAGATCAGAAACCTGCAT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 AAAGCAAGAGTGATAGTGATCAAGAGGATGAAGAGGCTAGTGAAGATCAGAAACCTGCAT 1078
Query 1111 ACAAACGGTTGATCACGATTCATGCTGGGAAACCAAAGGGAACGGTGAAAGAAGAGATGA 1170
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 ACAAACGGTTGATCACCATTCATGCAGGGAAACCAAAGGGAACGGTGAAAGAAGAGATGA 1138
Query 1171 AAGTTGTGGTTGATAAAGTGAGACGTTTGAGTTTAAGCGAGCAGGAACTTGACAGGACTT 1230
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AAGTTGTGGTGGATAAAGTGAGACGTTTGAGTTTAAGCGAGCAGGAACTTGACAGGACTT 1198
Query 1231 GTTCATCTAATAGTCAGGATGTTGTAAGGTTTACGCAGCGGAATTTGCTTCGGATATACC 1290
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1199 GTTCATCCAATAGTCAGGATGTTGTAAGGTTTACACAGCGGAATTTGCTTCGGATATACC 1258
Query 1291 CTAAAGGGACAAGATTTAACTCCTCAAACTACAAACCTCTTATCGGTTGGACTCACGGAG 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTAAAGGGACAAGATTTAACTCCTCAAACTACAAACCTCTTATCGGTTGGACTCACGGAG 1318
Query 1351 CGCAAATGATTGCTTTCAACATGCAGGGATATGGGAAATCTCTGTGGTTGATGCACGGTA 1410
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1319 CGCAAATGATTGCATTCAACATGCAGGGATATGGGAAATCTCTGTGGTTGATGCACGGCA 1378
Query 1411 TGTTTAGAGCCAATGGAGGTTGTGGATATGTCAAAAAACCTAACTTCTTGATGAAGAAAG 1470
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1379 TGTTTAGAGCCAATGGAGGTTGTGGATATGTCAAGAAACCTAACTTCTTGATGAAGAAAG 1438
Query 1471 GGTTTCACGATGAAGTCTTTGACCCTAGGAAGAAACTCCCTGTTAAAGAAACGTTAAAGG 1530
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1439 GGTTTCACGACGAAGTCTTTGACCCTAGGAAGAAACTCCCTGTGAAAGAAACGTTAAAGG 1498
Query 1531 TGAAAGTGTATATGGGAGATGGATGGCGTATGGACTTCAGTCATACTCACTTTGATGCAT 1590
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1499 TGAAAGTGTATATGGGAGATGGATGGCGTATGGACTTCAGTCACACTCACTTTGACGCAT 1558
Query 1591 ATTCTCCTCCTGATTTCTACACTAAGATGTTCATAGTGGGTGTACCAGCGGATAACGCGA 1650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 ATTCTCCTCCTGATTTCTACACTAAGATGTTCATAGTGGGTGTACCAGCGGATAACGCGA 1618
Query 1651 AAAAGAAGACAAAAATAATCGAAGACAATTGGTATCCAATTTGGGATGAGGAATTCAGCT 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1619 AAAAGAAGACAAAAATAATCGAAGACAATTGGTATCCAATTTGGGATGAGGAATTTAGTT 1678
Query 1711 TCCCATTAACCGTTCCAGAGCTTGCATTGCTTAGGATCGAAGTAAGAGAGTATGATATGT 1770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 TCCCATTAACCGTTCCAGAGCTTGCATTGCTTAGGATCGAAGTAAGAGAGTATGATATGT 1738
Query 1771 CGGAGAAGGATGATTTTGGTGGACAAACATGCTTGCCTGTTGCAGAGTTAAGACCAGGGA 1830
||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1739 CGGAGAAGGATGATTTTGGGGGACAAACATGCTTGCCTGTTGCAGAATTAAGACCGGGGA 1798
Query 1831 TTCGATCTGTGCCTTTGTATGACAAAAAGGGTGAGAAAATGAAATCAGTACGGCTTCTTA 1890
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1799 TTCGATCTGTGCCATTGTATGATAAAAAGGGTGAGAAAATGAAATCAGTACGGCTTCTTA 1858
Query 1891 TGCGTTTCATCTTCGAATGATTTGGCTTAACAGAAATGTGT 1931
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TGCGTTTCATCTTCGAATGATTTGGCTTAACAGAAATGTGT 1899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80294236460
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5