BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40120.1
Length=2245
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483055 jgi|Araly1|483055|fgenesh2_kg.4__2115__AT2G40120.1 2383 0.0
Ahg473791 jgi|Araly1|473791|fgenesh2_kg.1__3745__AT4G03175.1 254 3e-66
> Ahg483055 jgi|Araly1|483055|fgenesh2_kg.4__2115__AT2G40120.1
Length=2175
Score = 2383 bits (1290), Expect = 0.0
Identities = 1500/1596 (94%), Gaps = 36/1596 (2%)
Strand=Plus/Plus
Query 637 ATCATCT-TCTGATGGACAGTCTCAATTTGGGACAGCTAGGACATATCCAGAGTGGAGCG 695
||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 614 ATCAT-TATCTGATGGACAGTCTCAATTTGGGACAGCTCGGACATATCCAGAGTGGAGCG 672
Query 696 AGTTTTACTTGCACAATGAGACTGAAGATGAAGATGAGTTTATGTCTCCTGCATTTAGAG 755
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AGTTTTACTTGCATAATGAGACTGAAGATGAAGATGAGTTTATGTCTCCTGCATTTAGAG 732
Query 756 AATCTGATTGCTTCATTTTACCTGAAAATGCAGAGGATAAGTTTATCACAGATAACCAAT 815
||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 733 AATCTGATTTCTTTATTTTACCTGAAAATGCTCAGGATAAGTTCATCACAGATAACCAAT 792
Query 816 TCGAGAA-TTCGCTTGGTGTCTATGATAGATCATCATCTCAAGGGTCTCTAACCGAAGCG 874
||||||| | ||||||||| ||||||| |||||||||||||||||||| ||||||||||
Sbjct 793 TCGAGAACAT-GCTTGGTGTTTATGATAAATCATCATCTCAAGGGTCTCAAACCGAAGCG 851
Query 875 AGTCTCGATTACTTAGATAAGCCCTTTCTTCTTGACATTGGTCTTGAGGATAAAACTGAT 934
||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 852 AGTCTCGATTACTTAGATAAGCCGTTTCTTCTCGACATTGGTCTTGATGATAAAACTGAT 911
Query 935 GAGCTTGATCTCAAGACTGGTGATCAGTTGAATGTAACAGATGAAGAGGTTGATGTTGTT 994
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 912 GAGCTTGATCTCAAGACCGGTGATCAGGTGAATGTAACAGATGAAGAGGTTGATGTTGTT 971
Query 995 CATGAGGTTGAAGATGAATATGAAGTGTTTAATCTTAGAATCATTCACTGGAAAAACAGG 1054
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 972 CATGAGGTTGAAGATGAATATGAAGTATTTAATCTTAGAATCATTCACTGGAAAAACAGG 1031
Query 1055 ACGGGATTCGAAGAGAACAAGGATCTACCAATTGTGATAAACACTGTGATTGGAGGAAGA 1114
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 1032 ACGGGATTCGAAGAGAACAAGGATCTACCAATTGTGATAAACTCGGTGATTGGAGGAAGA 1091
Query 1115 TATTACATTACGGAATACATTGGTTCTGCTGCATTTAGCAAGGTGGTTCAGGCACAGGAT 1174
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1092 TACTACATAACGGAATACATTGGTTCTGCTGCATTTAGCAAGGTGGTTCAGGCACATGAT 1151
Query 1175 CTACACAACGGGGTTGATGTTTGCCTCAAGATTATTAAGAACGATAAAGATTTCTTTGAT 1234
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1152 CTACACAATGGGGTCGATGTTTGCCTCAAGATTATCAAGAACGATAAAGATTTCTTCGAT 1211
Query 1235 CAGAGTTTAGATGAGATCAAGCTATTGAAACATGTCAATAAGCATGATCCTGCTGATGAA 1294
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1212 CAGAGTTTAGACGAGATCAAGCTATTGAAACATGTCAATAAGCATGATCCTACTGATGAA 1271
Query 1295 CATCATATCTTGCGCCTCTATGATTACTTCTACCACCAAGAACATTTGTTTATCGTCTGT 1354
||||| ||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 1272 CATCACATCCTGCGCCTCTACGATTACTTCTACCATCAAGAACATTTGTTTATTGTCTGT 1331
Query 1355 GAACTTCTCCGAGCAAACTTGTATGAGTTTCAGAAATTCAACCAAGAATCAGGAGGAGAA 1414
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 1332 GAACTTCTCCGAGCAAACTTGTATGAATTCCAGAAATTCAATCAAGAATCAGGAGGAGAA 1391
Query 1415 CCATACTTTAACTTAAGCAGACTTCAGGTTATAACACGTCAGTGTTTGGATGCTCTTGTG 1474
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1392 CCATACTTTAACTTAAGCAGACTTCAGGTTATAACCCGTCAGTGTTTGGATGCGCTTGTG 1451
Query 1475 TTCCTTCATGGACTAGGAATCATACATTGTGATCTCAAACCTGAGAATATACTGATAAAG 1534
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1452 TTCCTTCATGGACTAGGAATCATACATTGTGATCTTAAACCTGAGAATATACTGATAAAG 1511
Query 1535 AGTTACAAAAGATGCGCGGTAAAAATCATCGATCTTGGAAGTAGTTGTTTCCGCTCTGAT 1594
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1512 AGTTACAAAAGATGTGCGGTGAAAATCATCGATCTTGGAAGTAGTTGTTTCCGCTCTGAC 1571
Query 1595 AACTTGTGCTTGTATGTACAATCTCGTTCCTATAGAGCTCCTGAAGTGATTCTCGGGCTT 1654
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1572 AACTTGTGCTTGTATGTACAATCTCGTTCTTATAGAGCTCCTGAAGTGATTCTCGGGCTT 1631
Query 1655 CCATATGACGAAAAGATCGATTTGTGGTCTCTTGGGTGTATTTTAGCAGAACTCTGCTCT 1714
|||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1632 CCATATGATGAAAAGATTGATTTGTGGTCTCTTGGGTGTATTTTAGCAGAGCTCTGCTCT 1691
Query 1715 GGTGAGGTTCTGTTTCCAAACGAAGCAGTAGCGATGATATTGGCTAGGATTGTTGCAGTT 1774
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1692 GGTGAGGTTCTGTTTCCAAATGAAGCAGTAGCGATGATATTGGCTCGGATTGTTGCAGTT 1751
Query 1775 TTAGGTCCTATAGAAACAGAGATGCTAGAGAAAGGTCAGGAGACACATAAATACTTCACC 1834
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1752 TTAGGTCCTATAGAAACAGAGATGCTAGAGAAAGGTCAAGAGACACATAAATACTTCACT 1811
Query 1835 AAAGAGTATGATCTCTACCACTTAAACGAGGAGAGCAATGAGATTGAATACATAATCACA 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1812 AAAGAGTATGATCTCTACCACTTAAACGAGGAGAGCAATGAGATTGAATACATAATCACA 1871
Query 1895 GAAGAATCAAGCTTGGAAGAACAATTACAAGTTAGTGATGAATTGTTCTTAGATTTTGTA 1954
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1872 GAAGAATCATGCTTGGAAGAACAATTACATGTTAGTGATGAATTGTTCTTAGATTTTGTA 1931
Query 1955 AGGACTCTACTTGATATCAATCCTTTGAGACGTCCAACAGCTCTAGAGGCACTTAACCAC 2014
|||| ||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1932 AGGAGTCTACTTGAGATCAATCCATTGAGACGTCCAACAGCTCTCGAGGCACTTAACCAC 1991
Query 2015 CCTTGGCTCTCTTCTTCTTCATCTTACAATTGAttttgcttcttcttttgttggttgttt 2074
|||||||||||||||||||| | | |||||||||||||||| ||||| ||||||||||||
Sbjct 1992 CCTTGGCTCTCTTCTTCTTC-T-T-ACAATTGATTTTGCTTGTTCTTGTGTTGGTTGTTT 2048
Query 2075 ggttttgtcttattctttgtttctccagtttttttcCCTCTTGGAATCTTGCTTGTGATT 2134
||||||||||||||||||||||||||||||||| ||| ||||| || || |
Sbjct 2049 AGTTTTGTCTTATTCTTTGTTTCTCCAGTTTTTTG-------GGA-TCTTG-TT-TG-T- 2096
Query 2135 TTTGTATTGTTTAATCGCTGTAATTGTGAGATTAATATGTGTATAGAACGGTTTTTACAT 2194
| ||| ||| | | ||||||||||||| | |||||||||||||||| ||||
Sbjct 2097 ---G-ATT-TTT----G-T--AATTGTGAGATTA-T--GTGTATAGAACGGTTT--ACAT 2139
Query 2195 TGATTTCACATTGTAAGTAAAAAGCTTGTGTGGTGC 2230
||||||||||||||||||||||||||||||||||||
Sbjct 2140 TGATTTCACATTGTAAGTAAAAAGCTTGTGTGGTGC 2175
Score = 534 bits (289), Expect = 9e-151
Identities = 435/498 (87%), Gaps = 39/498 (8%)
Strand=Plus/Plus
Query 1 AAACCTTCAGAGAGAAAATTT-CCCC-----aaaaaaaCCGGTAAGACAAGACATCGCAC 54
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1 AAACCTTCAGAGAGAAAATTTCCCCCAAAAAAAAAAAACCGGTAAGACAAGACATCGCAC 60
Query 55 CATGTCCGTATCCGTTATAGTTAACTTTGGTCCTACAGAGCCAACACAGAGTAGAACAAG 114
|| | | |||||||| ||||||||||||||||||||||| | ||||||||| |||
Sbjct 61 CA--T--G--TCCGTTATTGTTAACTTTGGTCCTACAGAGCCTATACAGAGTAG---AAG 111
Query 115 TAGACTCAGATgaagaagaagaagaaagaaagaTCACAGATTTAGATTCAATCATCAGAG 174
||||||||||||||||||||||| || |||||||| ||||||||||| |||||||||||
Sbjct 112 AAGACTCAGATGAAGAAGAAGAAG-AATAAAGATCAGAGATTTAGATTAAATCATCAGAG 170
Query 175 CATGCGTGACTTTAACAAGCTTATCATCAATACCAAACAATGGGTTTTAGTTTCTTGACT 234
|||||| |||||||| |||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 171 CATGCGAGACTTTAAGAAGCTTATCATCAATACC-AACAATGGGTTTTAGTTTTTTGACT 229
Query 235 CGATTCTCAATCACGTGATTCAAAGTTTGAAACTTTCCTCT-TCTCTTATCTCTCTCCGT 293
||||||||||||||||||||| ||||||||||||||||| | | ||| | |||| | |
Sbjct 230 CGATTCTCAATCACGTGATTCCAAGTTTGAAACTTTCCT-TGT-TCTGA-AACTCT-C-T 284
Query 294 GCTTTGTTCTGAAACTCTCTCGTGACAGTGGTGGTTGGTCAATGGCGGTTGATGTTAAAT 353
| | || | | | ||||||||||||||||||||||||||||||||| ||||
Sbjct 285 -C---G---TG--A----CAC-TGACAGTGGTGGTTGGTCAATGGCGGTTGATGTGAAAT 330
Query 354 CTGTTCTTGAGTTTCTTC-GACGGAATGGTTTAACGGAGGCGGAATCTGCTCTTAGAGAC 412
|||| ||||||||||| | || ||||||||||||||||||||||||||||||| ||||||
Sbjct 331 CTGTGCTTGAGTTTCTCCGGA-GGAATGGTTTAACGGAGGCGGAATCTGCTCTGAGAGAC 389
Query 413 GATATCAACGAGAAAAACAAACTCGCTTCTTTCGATTTCGAGAAGTTTCTGTTCCCGATT 472
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 390 GATATTAACGAGAAAAACAAACTCGCTTCTTTCGATTTCGAGAAGTTTCTGTTCCCGATT 449
Query 473 CCTACGCCGATCAAAATC 490
|| | ||||||| ||||
Sbjct 450 CCGCCACCGATCAGAATC 467
> Ahg473791 jgi|Araly1|473791|fgenesh2_kg.1__3745__AT4G03175.1
Length=486
Score = 254 bits (137), Expect = 3e-66
Identities = 167/181 (92%), Gaps = 3/181 (2%)
Strand=Plus/Plus
Query 1865 GAGAGCAATGAGATTGAATACATAATCACAGAAGAATCAAGCTTGGAAGAACAATTACAA 1924
||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 307 GAGAGCAATAAGATTGAATACATAATCACAGAAGAATTATGCTTGGAAGAACAATTACAT 366
Query 1925 GTTAGTGATGAATTGTTCTTAGATTTTGTAAGGACTCTACTTGATATCAATCCTTTGAGA 1984
||||||||||||||||||||||||||||||| || ||||||||| |||||||| ||||||
Sbjct 367 GTTAGTGATGAATTGTTCTTAGATTTTGTAAAGAGTCTACTTGAGATCAATCCATTGAGA 426
Query 1985 CGTCCAACAGCTCTAGAGGCACTTAACCACCCTTGGCTCTCTTCTTCTTCATCTTACAAT 2044
|||||||||||||| |||| |||||||||||||||||||||||| ||||| | | |||||
Sbjct 427 CGTCCAACAGCTCTCGAGGTACTTAACCACCCTTGGCTCTCTTCCTCTTC-T-T-ACAAT 483
Query 2045 T 2045
|
Sbjct 484 T 484
Score = 183 bits (99), Expect = 4e-45
Identities = 207/255 (81%), Gaps = 24/255 (9%)
Strand=Plus/Plus
Query 1631 GCTCCTGAAGTGATTCTCGGGCTTCCATATGACGAAAAGATCGATTTGTGGTCTCTTGGG 1690
|||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1 GCTCCTGAAGTGATTCTCGGGCTTCCATATGACGAAAA-ATTGATTTGTGGTCTTTTGGG 59
Query 1691 TGTATTTTAGC-AGAAC----TCT-GC-T-CTGGTG-AGGT-TCT-GTTTC-C-----AA 1733
| | ||| | | | ||| ||| | | ||| | | | || || | | ||
Sbjct 60 T-T-TTTCATCAAAAACTTTATCTCACATACTGAAGAAACTAACTAGTAACACAAATAAA 117
Query 1734 ACG----AAGCAGTAGCGATGATATTGGCTAGGATTGTTGCAGTTTTAGGTCCTATAGAA 1789
| | || |||||||||||||||||| | |||||||| | |||||||||| | |||||
Sbjct 118 ATGTATCAATCAGTAGCGATGATATTGGTTCGGATTGTTACGGTTTTAGGTCTTCTAGAA 177
Query 1790 ACAGAGATGCTAGAGAAAGGTCAGGAGACACATAAATACTTCACCAAAGAGTATGATCTC 1849
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 178 ACAGAGATGCTAGAGAAAGGTCAAGAGACACATAAATACTTCACTAAAGAGTATGATCTC 237
Query 1850 TACCACTTAAACGAG 1864
||||||||||| |||
Sbjct 238 TACCACTTAAATGAG 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84522253655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5