BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40150.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483061 jgi|Araly1|483061|fgenesh2_kg.4__2121__AT2G40150.1 1962 0.0
Ahg938546 jgi|Araly1|938546|scaffold_502737.1 857 0.0
> Ahg483061 jgi|Araly1|483061|fgenesh2_kg.4__2121__AT2G40150.1
Length=1769
Score = 1962 bits (1062), Expect = 0.0
Identities = 1240/1323 (94%), Gaps = 23/1323 (2%)
Strand=Plus/Plus
Query 118 ATGAAGCAAAGAAAGAAGAGTTatctctcaatcttcgtgatcttcttctctcttttcttc 177
|||||||| |||||||||||| |||||||||||||||| ||| |||||||||||||| ||
Sbjct 450 ATGAAGCAGAGAAAGAAGAGTAATCTCTCAATCTTCGTAATCGTCTTCTCTCTTTTCCTC 509
Query 178 ttcgggatcttcATGTACAATGACAACCTCAAATCCTCCATTGCTGACTTCACATCTTCG 237
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 510 TTGGGGATCTTCATGTACAATGACAACCTCAAATCCTCCATTGCTGATTTCACATCTTCG 569
Query 238 AACCCATTCTCTAGTTCATTTGTGGAGTTGCCGCCGGATGAGTGTGATCTGTTCACCGGT 297
||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct 570 AACCCATTCTCTAGTTCATCTGTGGAGTTGCCGCCGGAGGAGTGTGATCTCTTCACCGGT 629
Query 298 CAATGGGTTTTCGACAACAAGACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTG 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 CAATGGGTTTTCGACAACAAGACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTG 689
Query 358 ACGGAGCAAGTGACTTGTTTAAGAAACGGAAGGAAAGATTCTTTGTTTCAGAATTGGAGA 417
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 690 ACGGAGCAAGTGACTTGCTTAAGAAACGGAAGGAAAGATTCTCTGTTTCAGAATTGGAGA 749
Query 418 TGGCAACCTAGAGACTGTTCTTTACCAAAATTCAATGCAAGAGTGTTGTTAGAGAAGCTG 477
||||||||||||||||||||||||||||||||||| || || |||||| |||||||||||
Sbjct 750 TGGCAACCTAGAGACTGTTCTTTACCAAAATTCAAAGCGAGGGTGTTGCTAGAGAAGCTG 809
Query 478 AGGAACAAGAGATTGATGTTTGTCGGTGACTCGTTAAACCGGAACCAATGGGAATCAATG 537
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 810 AGGAACAAGAGATTGATGTTTGTTGGTGACTCGTTAAACCGGAACCAATGGGAATCAATG 869
Query 538 GTTTGTTTGGTTCAATCAGTGATTCCTCCCGGTAGAAAAAGCTTAAACCAGACCGGTTCA 597
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 870 GTTTGTTTGGTTCAATCAGCGATTCCTCCCGGTAGAAAGAGCTTAAACCAGACCGGTTCT 929
Query 598 CTCACTGTTTTCAAAATCCAGGACTATAACGCGACGGTGGAGTTTTATTGGGCGCCATTT 657
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 CTCACTGTTTTCAAAATTCAGGACTATAACGCGACGGTGGAGTTTTATTGGGCGCCATTT 989
Query 658 TTGGTGGAATCAAATTCAGACGATCCG-GAAAAGCACAGTATAATCGACCGTATAATAAT 716
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 990 TTGGTAGAATCAAATTCAGACGATCCGAGAAA-GCACAGTATAATCGACCGTATAATAAT 1048
Query 717 GCCAGAGTCCATCGAGAAGCATGGAGTCAACTGGATAGGCGTTGACTTTCTTGTCTTCAA 776
||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1049 GCCAGAGTCTATCGAGAAACATGGAGTCAACTGGATAGGTGTTGACTTTCTTGTCTTCAA 1108
Query 777 TAGTTACATCTGGTGGATGAATACTGTCTCCATCAAAGTCCTACGTGGATCGTTCGATGA 836
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1109 TAGTTACATCTGGTGGATGAACACTGTCTCCATCAAAGTTCTACGTGGATCGTTCGATGA 1168
Query 837 TGGGGACACAGAGTATGATGAGATCAAACGGCCAATAGCGTACGAGAGGGTGTTGAGGAC 896
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1169 TGGGGACACAGAGTATGATGAGATCAAACGGCCAATGGCGTACGAGAGGATGTTGAGGAC 1228
Query 897 ATTGGGAGATTGGGTGGACCATAACATTGATCCTCTAAGTACAACTGTTTTCTTCATGAG 956
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 ATTGGGAGATTGGGTGAACCATAACATTGATCCTCTAAGTACAACTGTTTTCTTCATGAG 1288
Query 957 CATGTCTCCTCTTCACATCAAGAGCTCAGATTGGGCTAATCCTGAGGGTATAAGGTGTGC 1016
|||||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||
Sbjct 1289 CATGTCTCCTCTTCACATCAAGAGCTTAGATTGGGATAATCCAGAGGGTATAATGTGTGC 1348
Query 1017 TTTAGAGACAACACCGATCTTGAACATGTCTTTCAACGTGG---CTTACG---GGCAGTT 1070
||||||||||||||| ||||| ||||||||||||||||||| | || ||| |||
Sbjct 1349 TTTAGAGACAACACCAATCTTAAACATGTCTTTCAACGTGGGGACGAACTATAGGCTGTT 1408
Query 1071 TTCCGCGGTGGGGACGGATTACAGGCTGTTTCCGGTGGCGGAAAACGTTACACAGTCTCT 1130
|||||||||||| ||||| || ||||||||| |||||| |||||||||||| ||||||||
Sbjct 1409 TTCCGCGGTGGGAACGGACTATAGGCTGTTTTCGGTGGTGGAAAACGTTACGCAGTCTCT 1468
Query 1131 AAAAGTTCCTATTCATTTCCTCAACATTACTGCATTGTCTGAGTATCGTAAAGATGCACA 1190
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1469 CAAAGTTCCTATTCATTTCCTCAACATCACTGCATTGTCTGAGTATCGTAAAGATGCACA 1528
Query 1191 TACTTCGGTTTACACGATCAAGCAAGGCAAGTTGCTGACGCGGGAGCAGCAAAAC-GATC 1249
|||||| ||||||||||||||||||||||| |||||||| |||||||| ||| | ||||
Sbjct 1529 TACTTCAGTTTACACGATCAAGCAAGGCAAATTGCTGACTCGGGAGCAACAAG-CTGATC 1587
Query 1250 CAGCCAATTTTGCTGATTGCATACACTGGTGCTTACCAGGCCTTCCTGATACATGGAATG 1309
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1588 CGGCCAATTTTGCTGATTGCATACACTGGTGCTTACCAGGCCTTCCTGATACTTGGAATG 1647
Query 1310 AGTTTCTCTATACACATATTATTTCTCGAAGATGA--------G-ATTCTTTCATCC-TC 1359
||||||||||||||||||||||||||| ||||||| | |||||||| ||| |
Sbjct 1648 AGTTTCTCTATACACATATTATTTCTCAAAGATGAAATTATTTGGATTCTTTCCTCCCTT 1707
Query 1360 TTTTTTGGTTT-aaaaaaaTTCTTGTGATGTATATAGGACAGA-GATTCAAGGGATTTGA 1417
||||||||||| |||||||||||||||||||||||||||| || |||| ||||||||| |
Sbjct 1708 TTTTTTGGTTTTAAAAAAATTCTTGTGATGTATATAGGAC-GAAGATTTAAGGGATTTAA 1766
Query 1418 AGT 1420
|||
Sbjct 1767 AGT 1769
Score = 669 bits (362), Expect = 0.0
Identities = 422/451 (94%), Gaps = 4/451 (1%)
Strand=Plus/Plus
Query 2 TCTCTCTGAGCCACATGCCGACAC-TTACATAACTGTTGACCAAG-T-CTC-TCTTCCTT 57
|||||| || |||||||||||||| |||||||||||||||||||| | ||| |||| |||
Sbjct 1 TCTCTCCGACCCACATGCCGACACTTTACATAACTGTTGACCAAGTTCCTCTTCTTTCTT 60
Query 58 CTTTATCAAATCATGCAACCTTCAAGAACAAGAGTTTCATTTTTTGAAACAGGAGAGACC 117
|||||||| ||||||||||||||||||||||||||| ||||||| |||||||||| || |
Sbjct 61 CTTTATCAGATCATGCAACCTTCAAGAACAAGAGTTCCATTTTTCGAAACAGGAGTGATC 120
Query 118 ATGAAGCAAAGAAAGAAGAGTTatctctcaatcttcgtgatcttcttctctcttttcttc 177
|||||||| |||||||||||| |||||||||||| ||| ||| |||||||||||||| ||
Sbjct 121 ATGAAGCAGAGAAAGAAGAGTAATCTCTCAATCTCCGTAATCGTCTTCTCTCTTTTCCTC 180
Query 178 ttcgggatcttcATGTACAATGACAACCTCAAATCCTCCATTGCTGACTTCACATCTTCG 237
|| |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 181 TTGGGGATCTTCATGTACAATGACAACCTCAAATCCTCCATCGTTGACTTCACATATTCG 240
Query 238 AACCCATTCTCTAGTTCATTTGTGGAGTTGCCGCCGGATGAGTGTGATCTGTTCACCGGT 297
|||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 241 AACCCATTCTCTAGTTCATTTGTGGAGTTGCCACCGGAGGAGTGTGATCTCTTCACCGGT 300
Query 298 CAATGGGTTTTCGACAACAAGACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTG 357
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 301 GAATGGGTTTTCGACAACAAGACACATCCATTGTATAAAGAGGAAGAGTGTGAGTTCTTG 360
Query 358 ACGGAGCAAGTGACTTGTTTAAGAAACGGAAGGAAAGATTCTTTGTTTCAGAATTGGAGA 417
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACGGAGCAAGTGACTTGCTTAAGAAACGGAAGGAAAGATTCTTTGTTTCAGAATTGGAGA 420
Query 418 TGGCAACCTAGAGACTGTTCTTTACCAAAAT 448
|||||||||||||||||||||||||||||||
Sbjct 421 TGGCAACCTAGAGACTGTTCTTTACCAAAAT 451
> Ahg938546 jgi|Araly1|938546|scaffold_502737.1
Length=1506
Score = 857 bits (464), Expect = 0.0
Identities = 892/1094 (82%), Gaps = 48/1094 (4%)
Strand=Plus/Plus
Query 259 GTGGAGTTGCCGCCGGATGAGTGTGATCTGTTCACCGGTCAATGGGTTTTCGACAACAAG 318
||||| ||||||||||| ||||||||| |||||||||| |||||||||| || ||| ||
Sbjct 417 GTGGAATTGCCGCCGGAGGAGTGTGATTTGTTCACCGGAGAATGGGTTTTTGATAACGAG 476
Query 319 ACATATCCATTGTATAAAGAAGAAGAGTGTGAGTTCTTGACGGAGCAAGTGACTTGTTTA 378
|| |||| ||||||||||| || |||||||||||||||||| |||||||||||| |
Sbjct 477 ACGCATCCGTTGTATAAAGAGGATCAGTGTGAGTTCTTGACGGCGCAAGTGACTTGCATG 536
Query 379 AGAAACGGAAGGAA-AGATTCTTTGTTTCAGAATTGGAGATGGCAACCTAGAGACTGTTC 437
||||| |||| ||| ||||||| ||| |||||| |||||||||||||| ||||| |||||
Sbjct 537 AGAAATGGAA-GAAGAGATTCTCTGTATCAGAACTGGAGATGGCAACCAAGAGATTGTTC 595
Query 438 TTTACCAAAATTCAATGC-AAGAGTGTTGTTAGAGAAGCTGAGGAACAAGAGATTGATGT 496
||||||||| ||||| || || | || |||| |||||||| ||||||||| || ||||||
Sbjct 596 TTTACCAAAGTTCAAAGCGAA-ATTGCTGTTGGAGAAGCTAAGGAACAAGCGAATGATGT 654
Query 497 TTGTCGGTGACTCGTTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAG 556
| || || || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TCGTTGGAGATTCCCTAAACCGGAACCAATGGGAATCAATGGTTTGTTTGGTTCAATCAG 714
Query 557 TGATTCCTCCCGGTAGAAAAAGCTTAAACCAGACCGGTTCACTCACTGTTTTCAAAATCC 616
|| ||||||||||| |||||||||| ||| | |||||||| || | |||||| | |
Sbjct 715 TGGTTCCTCCCGGTCGAAAAAGCTTGAACAAAACCGGTTCTCTTTCCGTTTTCCGAGTTG 774
Query 617 AGGACTATAACGCGACGGTGGAGTTTTATTGGGCGCCATTTTTGGTGGAATCAAATTCAG 676
|||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 775 AGGATTATAATGCGACGGTGGAGTTTTATTGGGCACCATTTTTGGTGGAATCAAATTCAG 834
Query 677 ACGATCCGGAAA-A-GCACAGTATAATCGACCGTATAATAATGCCAGAGTCCATCGAGAA 734
| ||||| ||| | ||| |||||| | |||||||||||||||| |||||||| || ||
Sbjct 835 ATGATCC--AAATATGCATAGTATACTTAACCGTATAATAATGCCTGAGTCCATTGAAAA 892
Query 735 GCATGGAGTCAACTGGATAGGCGTTGACTTTCTTGTCTTCAATAGTTACATCTGGTGGAT 794
||||||||||||||||| || ||||||||| ||||| ||||| | |||||| ||||||||
Sbjct 893 GCATGGAGTCAACTGGAAAGACGTTGACTTCCTTGTTTTCAACACTTACATTTGGTGGAT 952
Query 795 GAATAC-TGTCTCCATCAAAGTCCTACGTGGATCGTTCGATGATGGGGACACAGAGTATG 853
||| || | || | || ||||||||||| |||||||||||| | |||||||| |||||||
Sbjct 953 GAACACAT-TCGCTATGAAAGTCCTACGCGGATCGTTCGATAAAGGGGACACCGAGTATG 1011
Query 854 ATGAGATCAAACGGCCAATAGCGTACGAG-AGGGTGTTGAGGACATTGGG-AGATTGGGT 911
| |||||| |||||||| |||| || || || ||| ||||||| ||||| |||||||||
Sbjct 1012 AGGAGATCGAACGGCCAGTAGCTTAT-AGGAGAGTGATGAGGAC-TTGGGGAGATTGGGT 1069
Query 912 GGACC-ATAACATTGATCCTCTAAGTACAACTGTTTTCTT--CATGAGCATGTCTCCTCT 968
||| | | || ||||||||||| |||| ||||||||||| | | ||||||||||||||
Sbjct 1070 GGAACGA-AATATTGATCCTCTGCGTACCACTGTTTTCTTTGC-T-AGCATGTCTCCTCT 1126
Query 969 TCACATCAAGAGCTCAGATTGGGCTAATCCTGA-GGGTATAAGGTGTGCTTTAGAGACAA 1027
|||||||||||||| ||||||| ||||| || ||| |||| |||||| |||||||| |
Sbjct 1127 TCACATCAAGAGCTTGGATTGGGAGAATCCAGATGGG-ATAAAGTGTGCATTAGAGACGA 1185
Query 1028 CACCGATCTTGAACATGTCTTTCAACGTGGCTTACGGGCAGTTTTCCGCGGTGGGGACGG 1087
|||| ||| | |||||||| || || | | | || | ||| | || || |
Sbjct 1186 CACCAATCCTAAACATGTC----AA--TG-C---C----A-TT--CAGCG-TAGGAACAG 1227
Query 1088 ATTACAGGCTGTTTCCGGTGGCGGAAAACGTTACACAGTCTCTAAAAGTTCCTATTCA-T 1146
| |||||||||||| | || ||||||||||| || || ||||| |||||||| || | |
Sbjct 1228 ACTACAGGCTGTTTTCAGTAGCGGAAAACGTCACGCATTCTCTTAAAGTTCCGGTTTACT 1287
Query 1147 TTCCTCAACATTACTGCATTGTCTGAGTATCGTAAAGATGCACATACTTCGGTTTACACG 1206
||| |||||||||| | | || || || || |||||||| || ||||||||| ||||
Sbjct 1288 TTC-TCAACATTACCAAACTCTCCGAATACCGGAAAGATGCTCACACTTCGGTTCACACA 1346
Query 1207 ATCAAGCAAGGCAAGTTGCTGACGCGGGAGCAGCAAAACGATCC-AGCCAATTTTGCTGA 1265
||| ||||||||| ||||||||| |||||| ||| |||||| | | | || || ||
Sbjct 1347 ATCCGGCAAGGCAAAATGCTGACGCCGGAGCAACAAGCCGATCCCAAC-ACTTACGCCGA 1405
Query 1266 TTGCATACACTGGTG-CTTACCAGGCCTT-CCTGATACATGGAATGAGTTTCTCTATACA 1323
||| || || ||||| ||| || || || ||||| || ||||||||||| || || |||
Sbjct 1406 TTGTATCCATTGGTGTCTTCCC-GGT-TTACCTGACACGTGGAATGAGTTCCTTTACACA 1463
Query 1324 CATATTATTTCTCG 1337
| ||| ||||||||
Sbjct 1464 CGTATCATTTCTCG 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5