BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40160.2
Length=1625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483062 jgi|Araly1|483062|fgenesh2_kg.4__2122__AT2G40160.1 1932 0.0
> Ahg483062 jgi|Araly1|483062|fgenesh2_kg.4__2122__AT2G40160.1
Length=1457
Score = 1932 bits (1046), Expect = 0.0
Identities = 1192/1264 (94%), Gaps = 4/1264 (0%)
Strand=Plus/Plus
Query 59 ATGAAGCAAACT-GACGGCAGAGAAAGGAAAGCTTACCTTTCTCTGCTATACTTTGCAGT 117
||||| |||| | || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGAAACAAA-TCGATGGCAGAGAAAGGAAAGCTTACCTTTCTCTGCTATACTTTGCCGT 59
Query 118 CATTCTTCTTCCCGTATTCCTTCTCGGATGCTATCTGTACAACGAGAAGCAGCTGAGGGT 177
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 60 CATTCTTCTACCCGTATTCCTTCTCGGATGCTATCTTTACAACGAGAAGCAGCTGAGGAT 119
Query 178 TGGCCAGTTTCAGGAATTCAATACACATAACCTGCAAGAACACATCACTCCACTACAACA 237
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 120 TGGCCAGTTTCAGGAATTCAAGACACATAACCTGCAAGAACACATCAGTCCACCACAACA 179
Query 238 AAGCAAAGAAGATAAAGACAAGAAGACTGATCTTGTTCCATTAGAATTCTGTGATGTTTT 297
||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 180 AAGCAAAGAAGATAAAGACAAGAAGACTGATGTTGTTCCATTAGAAGCCTGCGATGTTTT 239
Query 298 CACAGGAAAATGGGTTCTTGATAACGTCACACATCCTTTATACAAAGAAGATGAATGTGA 357
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 240 CACAGGAAAATGGGTTCTTGATAACATCACACATCCTTTATACAAAGAAGATGAATGTGA 299
Query 358 GTTTCTATCAGAGTGGGTGGCTTGTACAAGAAACGGGAGGCCAGACTCTAAGTACCAGAA 417
|||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 300 GTTTCTCTCAGAGTGGGTGGCATGTACGAGAAACGGGAGACCAGACTCTAAGTACCAGAA 359
Query 418 ATGGAGATGGCAACCTCAAGATTGCTCTTTGCCAAGGTTCGACAGTAAGCTGCTGCTAGA 477
||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 360 ATGGAGATGGCAACCTCGAGATTGCTCTTTGCCAAGGTTCGACGGAAAGCTGCTGCTAGA 419
Query 478 GAAACTCAGGGGAAAGAAACTAATGTTCATTGGTGATTCAATACATTACAATCAGTGGCA 537
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 420 GAAACTCAGGGGAAAGAAACTGATGTTCGTTGGTGATTCAATACATTACAATCAGTGGCA 479
Query 538 ATCCATGGTTTGTATGGTTCAATCCGTGATTCCCTCAGGCAAAAAGACCTTAAAACACAC 597
|||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||
Sbjct 480 ATCCATGGTTTGTATGGTCCAATCCTTGATTCACTCAGGCAAAAAGACCTTAAAACACAC 539
Query 598 AGCACAAATGTCCATCTTCAACATAGAGGAGTACAATGCAACCATATCATTTTACTGGGC 657
|||||||||||| |||||||||| |||||||||||| ||||||||| |||||||||||||
Sbjct 540 AGCACAAATGTCAATCTTCAACACAGAGGAGTACAACGCAACCATAGCATTTTACTGGGC 599
Query 658 ACCTTTCCTAGTCGAATCAAATGCTGATCCTCCAGACAAGAGAGACGGGAAGACCGATCC 717
||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 ACCTTTCTTAGTAGAATCAAACACTGATCCTCCAGACAAGAGAGACGGGAAGACCGATCC 659
Query 718 AGTAATCATTCC-TAATTCAATCTCGAAACACGGCGAGAACTGGAAAGACGCAGACTACC 776
||||||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGTAATCATACCGCAA-TCAATCTCGAAACACGGCGAGAACTGGAAAGACGCAGACTACC 718
Query 777 TCATATTCAACACCTACATATGGTGGACTAGACATTCCACGATCAAAGTTCTAAAACAAG 836
| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 719 TTGTATTCAACACCTACATATGGTGGACCAGACATTCCAAGATCAAAGTTCTAAAACAAG 778
Query 837 AATCTTTCAACAAAGGAGACTCAAAAGAGTACAATGAAATCGGAATCTATATAGTATACA 896
|||||||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||||
Sbjct 779 AATCTTTCAACAAAGGTGACTCAAAAGACTACGATGAAATCGGAATCTATATCGTATACA 838
Query 897 AACAAGTGTTATCAACATGGACAAAATGGCTAGAACAAAACATCAACCCAAGTCAAACAT 956
||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||
Sbjct 839 AACAAGTGTTATCAACATGGACAAACTGGCTAGAACAAAACATAAACCCAAATCAAACAT 898
Query 957 CTATCTTCTTCAGCAGCATGTCACCAACTCATATCAGAAGTTCAGATTGGGGATTCAATG 1016
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 899 CAATCTTCTTCAGCAGCATGTCACCAACTCATATCAGAAGCTCAGATTGGGGATTCAATG 958
Query 1017 AAGGAAGCAAATGTGAAAAAGAGACAGAACCAATACTAAACATGTCAAAACCAATAAATG 1076
|||||| ||| || |||||||||||||||||||||||||| ||||||| ||||||| |||
Sbjct 959 AAGGAAACAAGTGCGAAAAAGAGACAGAACCAATACTAAATATGTCAAGACCAATAGATG 1018
Query 1077 TTGGAACAAATCGAAGACTTTACGAAATCGCACTGAATGCGACCAAATCTACAAAAGTGC 1136
|||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||
Sbjct 1019 TTGGAACAAATCGAAGACTTTACGAAATCGCAGTGAATGTAACGAAATCAACAAAAGTGC 1078
Query 1137 CGATTCATTTCCTCAACATAACGACTATGTCAGAGTATAGAAAAGATGGGCATACCTCAT 1196
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 CGATACATTTCCTCAACATAACGACAATGTCAGAGTATAGAAAAGATGGGCATACCTCAT 1138
Query 1197 TTTACGGTTCGATAAATGGGAAACTCATGACGCCGGAGCAGAAGTTAGATCCGAGAACTT 1256
|||||||||||| || |||||||||||| |||||||||||||| || |||||||||||||
Sbjct 1139 TTTACGGTTCGAGAAGTGGGAAACTCATAACGCCGGAGCAGAAATTGGATCCGAGAACTT 1198
Query 1257 TTGCTGATTGTTATCATTGGTGTCTTCCGGGATTGCCTGATTCATGGAACGAGTTGCTCT 1316
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1199 TTGCTGATTGTTATCATTGGTGTCTTCCGGGATTGCCTGATACATGGAACGAGTTGCTCT 1258
Query 1317 CTCT 1320
||||
Sbjct 1259 CTCT 1262
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60906301755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5