BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G40170.1

Length=610
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934805 jgi|Araly1|934805|scaffold_402793.1                        475    1e-133


> Ahg934805 jgi|Araly1|934805|scaffold_402793.1
Length=324

 Score =  475 bits (257),  Expect = 1e-133
 Identities = 303/325 (93%), Gaps = 4/325 (1%)
 Strand=Plus/Plus

Query  70   TTG-TGTAAGTAACTAAAGAGCCATGGCGTCTCAACAAGAGAAGAAGCAGCTGGATGAGA  128
            ||| || |||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct  3    TTGTTGCAAGTAAGTAAAGAGCCATGGCGTCTCAGCAAGAGAAGAAGCAGCTGGACGAGA  62

Query  129  GGGCAAAGAAGGGCGAGACCGTCGTGCCAGGTGGTACGGGAGGCAAAAGCTTCGAAGCTC  188
            | ||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||
Sbjct  63   GAGCAAAGAAGGGAGAGACCGTCGTGCCAGGTGGCACTGGAGGCAAAAGCTTCGAAGCTC  122

Query  189  AACAGCATCTCGCTGAAGGGAGGAGCCGAGGAGGGCAAACTCGAAAGGAGCAGTTAGGAA  248
            |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  123  AACAACATCTCGCTGAAGGGAGGAGCCGAGGAGGGCAAACTCGGAAGGAGCAGTTAGGAA  182

Query  249  CTGAAGGATATCAGCAGATGGGACGCAAAGGTGGTCTTAGCACCGGAGACAAGCCTGGTG  308
            |||||||||| ||| |||||||||| |||||||||||||| |||||||||||||||||||
Sbjct  183  CTGAAGGATACCAGGAGATGGGACGTAAAGGTGGTCTTAGTACCGGAGACAAGCCTGGTG  242

Query  309  GGGAACACGCTGAGGAGGAAGGAGTCGAGATAGACGAATCCAAATTCAGGACCAAGACCT  368
            | ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  243  GTGAAAACGCTGAGGATGAAGGAGTCGAGATAGACGAATCCAAATTCAGGACCAAGACCT  302

Query  369  AAATCAAACTTCCCCACACGGATGT  393
            ||||| |||| ||||||  ||||||
Sbjct  303  AAATCGAACT-CCCCAC--GGATGT  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22301906445


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5