BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40190.1
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497266 jgi|Araly1|497266|fgenesh2_kg.108__2__AT2G40190.1 2464 0.0
Ahg483065 jgi|Araly1|483065|fgenesh2_kg.4__2125__AT2G40190.1 1397 0.0
Ahg930917 jgi|Araly1|930917|scaffold_303374.1 298 9e-80
Ahg920387 jgi|Araly1|920387|scaffold_101668.1 298 9e-80
Ahg940070 jgi|Araly1|940070|scaffold_600614.1 292 4e-78
> Ahg497266 jgi|Araly1|497266|fgenesh2_kg.108__2__AT2G40190.1
Length=1610
Score = 2464 bits (1334), Expect = 0.0
Identities = 1491/1565 (95%), Gaps = 17/1565 (1%)
Strand=Plus/Plus
Query 39 ATGGCGATCTACTTCATTCTCTATACACTTCTCACGATCATCTTCGCCGTATCTCTGAGT 98
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATCTGCTTCATTCTCTATACACTTCTCACGATCATCTTCGCCGTATCTCTGAGT 60
Query 99 TTATTTCTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTAGGATTCTTCCAT 158
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TTATCACTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTGGGATTCTTCCAT 120
Query 159 CCGTACACGAACGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCCGTTAAAGCCATT 218
||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 121 CCGTACACGAATGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCAGTCAAAGCCATC 180
Query 219 CAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTTCT 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTTCT 240
Query 279 GATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGTGTTCACCTTCAGTCTCCTCCTAAG 338
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGTGTTCACCTTCAATCTCCTCCTAAG 300
Query 339 GTGATTCATCTAAACAAAAGGAAATGGATTGAAGAGAGTACTTACCCACATTTTACAATG 398
|||||| |||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 301 GTGATTTATCTAAGCAAAAGGAAATGGATTGAAGAGAGGACTTACCCACATTTCACAATG 360
Query 399 ATAGGTCAGAGTCTTGGTTCGGTTTACTTAGCGTGGGAAGCATTACGCATGTTCACTCCT 458
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 ATAGGTCAGAGTCTTGGTTCGGTTTACTTAGCGTGGGAAGCATTACGCAAGTTCACTCCT 420
Query 459 TTGTATTTCCTTGACACTAGTGGATATGCGTTT-ACATATCCTCTTGCTCGGATCTTTGG 517
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 421 TTGTATTTCCTTGACACTAGTGGATATGC-TTTCACATATCCTCTTGCTCGGATCTTTGG 479
Query 518 TTGCAAAGTTGTTTGCTATACTCATTATCCAACTATTAGTTTGGATATGATTTCTCGTGT 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGCAAAGTTGTTTGCTATACTCATTATCCAACTATTAGTTTGGATATGATTTCTCGTGT 539
Query 578 TCGTCAGAGGAACTCTATGTATAACAATGATGCTTCCATTGCTAAGAGCAATTGGTTATC 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCGTCAGAGGAACTCTATGTATAACAATGATGCTTCCATTGCTAAGAGCAATTGGTTATC 599
Query 638 TACTTGCAAATTAGTCTATTACAGAGCTTTTAGCTGGATGTATGGGATGGTTGGGTCATG 697
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TACTTGCAAGTTAGTCTATTACAGAGCTTTTAGCTGGATGTATGGGATGGTTGGGTCATG 659
Query 698 TACTCATTTAGCTATGGTTAACTCTTCGTGGACTAAGTCCCATATCGAAGTGCTTTGGAG 757
||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 660 TACTCATCTAGCTATGGTTAACTCTTCGTGGACAAAGTCACATATCGAAGTGCTCTGGAG 719
Query 758 AATTCCAGAACGGATTACACGGGTCTACCCGCCCTGTGATACTTCAGGACTTCAGGCGTT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 AATTCCAGAACGGATTACACGGGTCTACCCGCCCTGTGATACTTCAGGACTTCAGGCATT 779
Query 818 TCCTCTTGAACGATCATCTGATCCTCCTAAAATCATATCAGTTGCTCAATTTCGTCCTGA 877
|| |||||| |||| || |||||||| ||||||||||| |||||||| |||||||||||
Sbjct 780 CCCACTTGAAAGATCTTCAGATCCTCCAAAAATCATATCCGTTGCTCAGTTTCGTCCTGA 839
Query 878 GAAGGCTCATATGCTTCAGCTTGAGGCCTTTTCACTAGCCTTAGAGAAGCTAGATGCAGA 937
||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||
Sbjct 840 GAAGGCTCATATGCTTCAGCTTGAGGCCTTTGCACTAGCCTTGGAGAAGTTAGATGCAGA 899
Query 938 CGTCCCTAGACCCAAGCTCCAATTTGTGGGAAGTTGTAGAAACAATTCAGATGAAGAACG 997
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGTCCCTCGACCCAAGCTCCAATTTGTGGGAAGTTGTAGAAACAATTCAGATGAAGAACG 959
Query 998 TCTGCAGAAATTGAAAGACAGAGCAGTGGAACTAAAAGTAGATGGAGACGTGCAATTCTA 1057
||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||
Sbjct 960 TCTGCAGAAATTGAAAGACAGAGCAGTTGAACTAAAAGTGGATGGAGACGTGGAATTCTA 1019
Query 1058 TAAAAATGCCATGTACAGAGAACTAGTGGAACTGTTAGGAAATGCAGTTGCAGGACTGCA 1117
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1020 TAAAAACGCCATGTACAGAGAACTAGTGGAACTGCTAGGAAATGCAGTTGCAGGAATGCA 1079
Query 1118 TGGGATGATAGATGAACACTTTGGTATAAGTGTTGTTGAGTACATGGCTGCTGGTGCAAT 1177
|||||||||||||||||||||||| || || ||||||||||||||||| |||||||| ||
Sbjct 1080 TGGGATGATAGATGAACACTTTGGGATTAGCGTTGTTGAGTACATGGCGGCTGGTGCGAT 1139
Query 1178 CCCAATAGCTCACAACTCAGCTGGACCTAAAATGGACATTGTGTTGGAAGAAGACGGACA 1237
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1140 CCCAATAGCTCACAACTCAGCTGGACCCAAAATGGACATCGTGTTGGAAGAAGACGGACA 1199
Query 1238 AAAAACCGGGTTTCTTGCTGAGACTGTGGAGGAATACGCTGAAGCGATCCTTGAGATTGT 1297
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1200 AAGAACCGGGTTTCTTGCTGAGACTGTGGAGGAATACGCCGAAGCGATCCTTGAGATTGT 1259
Query 1298 GAAGATGAATGAAACAGAGAGGCTTAAAATGGCTGAATCTGCTAGAAAACGAGCGGCAAG 1357
|||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1260 GAAGATGAGTGAAAAAGAGAGGATTAAAATGGCTGAATCTGCTAGAAAACGAGCGGTAAG 1319
Query 1358 GTTCTCTGAACAACGGTTTTGTGAGGACTTCAAAACTGCGATTCGACCCATTTTCACAGG 1417
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1320 GTTCTCTGAACAACGGTTTTGTGAGGACTTCAAAACTGCGATTCAACCCATTTTCACTGG 1379
Query 1418 TCCTCTTAAATGACAGTTCTTAAACCCTCAAAACCTGCTTACTGCACTAGCTTTTAAACG 1477
|||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 1380 TCCTCTTAAATGACAGTTCT----C--T--------GCTTACTGCACTAGCTTTTAAACG 1425
Query 1478 CACAAGACAAGCTAGGTTATACCTTTTATCCTCTCTTTATAGAtttttttttttAA-TTC 1536
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 1426 CACAAGACAAGCTAGGTTATACCTTTTATCCTCTCTTTATAGTTTTTTTTTTTTTAGTTC 1485
Query 1537 TGGTTAAAGGTCTGACGTAGACGTTGTAAGAAACAGTTTGGTCAAAAGAAACGAGTAAGA 1596
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1486 TGGTTAAAGGTCTGACGTAGACGTTGTAAGAAACAGTTTGATCAAAAGAAACGAGTAAGA 1545
Query 1597 TCTTC 1601
| |||
Sbjct 1546 TGTTC 1550
> Ahg483065 jgi|Araly1|483065|fgenesh2_kg.4__2125__AT2G40190.1
Length=1568
Score = 1397 bits (756), Expect = 0.0
Identities = 815/844 (97%), Gaps = 2/844 (0%)
Strand=Plus/Plus
Query 39 ATGGCGATCTACTTCATTCTCTATACACTTCTCACGATCATCTTCGCCGTATCTCTGAGT 98
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATCTGCTTCATTCTCTATACACTTCTCACGATCATCTTCGCCGTATCTCTGAGT 60
Query 99 TTATTTCTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTAGGATTCTTCCAT 158
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TTATCACTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTGGGATTCTTCCAT 120
Query 159 CCGTACACGAACGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCCGTTAAAGCCATT 218
||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 121 CCGTACACGAATGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCAGTCAAAGCCATC 180
Query 219 CAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTTCT 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTTCT 240
Query 279 GATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGTGTTCACCTTCAGTCTCCTCCTAAG 338
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 GATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGTGTTCACCTTCAATCTCCTCCTAAG 300
Query 339 GTGATTCATCTAAACAAAAGGAAATGGATTGAAGAGAGTACTTACCCACATTTTACAATG 398
||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 301 GTGATTCATCTAAGCAAAAGGAAATGGATTGAAGAGAGGACTTACCCACATTTCACAATG 360
Query 399 ATAGGTCAGAGTCTTGGTTCGGTTTACTTAGCGTGGGAAGCATTACGCATGTTCACTCCT 458
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 ATAGGTCAGAGTCTTGGTTCGGTTTACTTAGCGTGGGAAGCATTACGCAAGTTCACTCCT 420
Query 459 TTGTATTTCCTTGACACTAGTGGATATGCGTTT-ACATATCCTCTTGCTCGGATCTTTGG 517
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 421 TTGTATTTCCTTGACACTAGTGGATATGC-TTTCACATATCCTCTTGCTCGGATCTTTGG 479
Query 518 TTGCAAAGTTGTTTGCTATACTCATTATCCAACTATTAGTTTGGATATGATTTCTCGTGT 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGCAAAGTTGTTTGCTATACTCATTATCCAACTATTAGTTTGGATATGATTTCTCGTGT 539
Query 578 TCGTCAGAGGAACTCTATGTATAACAATGATGCTTCCATTGCTAAGAGCAATTGGTTATC 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCGTCAGAGGAACTCTATGTATAACAATGATGCTTCCATTGCTAAGAGCAATTGGTTATC 599
Query 638 TACTTGCAAATTAGTCTATTACAGAGCTTTTAGCTGGATGTATGGGATGGTTGGGTCATG 697
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TACTTGCAAGTTAGTCTATTACAGAGCTTTTAGCTGGATGTATGGGATGGTTGGGTCATG 659
Query 698 TACTCATTTAGCTATGGTTAACTCTTCGTGGACTAAGTCCCATATCGAAGTGCTTTGGAG 757
||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 660 TACTCATCTAGCTATGGTTAACTCTTCGTGGACAAAGTCACATATCGAAGTGCTCTGGAG 719
Query 758 AATTCCAGAACGGATTACACGGGTCTACCCGCCCTGTGATACTTCAGGACTTCAGGCGTT 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 AATTCCAGAACGGATTACACGGGTCTACCCGCCCTGTGATACTTCAGGACTTCAGGCATT 779
Query 818 TCCTCTTGAACGATCATCTGATCCTCCTAAAATCATATCAGTTGCTCAATTTCGTCCTGA 877
|| |||||| |||| || |||||||| ||||||||||| |||||||| |||||||||||
Sbjct 780 CCCACTTGAAAGATCTTCAGATCCTCCAAAAATCATATCCGTTGCTCAGTTTCGTCCTGA 839
Query 878 GAAG 881
||||
Sbjct 840 GAAG 843
Score = 1007 bits (545), Expect = 0.0
Identities = 643/688 (93%), Gaps = 16/688 (2%)
Strand=Plus/Plus
Query 916 CCTTAG-AGAAGCTAGATGCAGACGTCCCTAGACCCAAGCTCCAATTTGTGGGAAGTTGT 974
||| || |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 835 CCTGAGAAGAAATTAGATGCAGACGTCCCTCGACCCAAGCTCCAATTTGTGGGAAGTTGT 894
Query 975 AGAAACAATTCAGATGAAGAACGTCTGCAGAAATTGAAAGACAGAGCAGTGGAACTAAAA 1034
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 895 AGAAACAATTCAGATGAAGAACGTCTGCAGAAATTGAAAGACAGAGCAGTTGAACTAAAA 954
Query 1035 GTAGATGGAGACGTGCAATTCTATAAAAATGCCATGTACAGAGAACTAGTGGAACTGTTA 1094
|| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 955 GTGGATGGAGACGTGGAATTCTATAAAAACGCCATGTACAGAGAACTAGTGGAACTGCTA 1014
Query 1095 GGAAATGCAGTTGCAGGACTGCATGGGATGATAGATGAACACTTTGGTATAAGTGTTGTT 1154
|||||||||||||||||| |||||||||||||||||||||||||||| || || ||||||
Sbjct 1015 GGAAATGCAGTTGCAGGAATGCATGGGATGATAGATGAACACTTTGGGATTAGCGTTGTT 1074
Query 1155 GAGTACATGGCTGCTGGTGCAATCCCAATAGCTCACAACTCAGCTGGACCTAAAATGGAC 1214
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1075 GAGTACATGGCGGCTGGTGCGATCCCAATAGCTCACAACTCAGCTGGACCCAAAATGGAC 1134
Query 1215 ATTGTGTTGGAAGAAGACGGACAAAAAACCGGGTTTCTTGCTGAGACTGTGGAGGAATAC 1274
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1135 ATCGTGTTGGAAGAAGACGGACAAAGAACCGGGTTTCTTGCTGAGACTGTGGAGGAATAC 1194
Query 1275 GCTGAAGCGATCCTTGAGATTGTGAAGATGAATGAAACAGAGAGGCTTAAAATGGCTGAA 1334
|| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||
Sbjct 1195 GCCGAAGCGATCCTTGAGATTGTGAAGATGAGTGAAAAAGAGAGGATTAAAATGGCTGAA 1254
Query 1335 TCTGCTAGAAAACGAGCGGCAAGGTTCTCTGAACAACGGTTTTGTGAGGACTTCAAAACT 1394
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TCTGCTAGAAAACGAGCGGTAAGGTTCTCTGAACAACGGTTTTGTGAGGACTTCAAAACT 1314
Query 1395 GCGATTCGACCCATTTTCACAGGTCCTCTTAAATGACAGTTCTTAAACCCTCAAAACCTG 1454
||||||| |||||||||||| |||||||||||||||||||||| | | |
Sbjct 1315 GCGATTCAACCCATTTTCACTGGTCCTCTTAAATGACAGTTCT----C--T--------G 1360
Query 1455 CTTACTGCACTAGCTTTTAAACGCACAAGACAAGCTAGGTTATACCTTTTATCCTCTCTT 1514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 CTTACTGCACTAGCTTTTAAACGCACAAGACAAGCTAGGTTATACCTTTTATCCTCTCTT 1420
Query 1515 TATAGAtttttttttttAA-TTCTGGTTAAAGGTCTGACGTAGACGTTGTAAGAAACAGT 1573
||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1421 TATAGTTTTTTTTTTTTTAGTTCTGGTTAAAGGTCTGACGTAGACGTTGTAAGAAACAGT 1480
Query 1574 TTGGTCAAAAGAAACGAGTAAGATCTTC 1601
||| |||||||||||||||||||| |||
Sbjct 1481 TTGATCAAAAGAAACGAGTAAGATGTTC 1508
> Ahg930917 jgi|Araly1|930917|scaffold_303374.1
Length=308
Score = 298 bits (161), Expect = 9e-80
Identities = 199/218 (91%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 97 GTTTATTTCTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTAGGATTCTTCC 156
|||||| ||||||||||||||||||||||| | | |||||||||||| ||||||||||
Sbjct 1 GTTTATCACTTTCCGTGATCAATGCAAGAAACAATAAAAAACGTGCGGTGGGATTCTTCC 60
Query 157 ATCCGTACACGAACGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCCGTTAAAGCCA 216
||||||||||||||||||||||| | ||||||||||||||||| ||||| || |||||||
Sbjct 61 ATCCGTACACGAACGACGGTGGCAGTGGCGAGAGAGTGCTCTGATGCGCAGTCAAAGCCA 120
Query 217 TTCAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTT 276
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCAAGAGGAAACTCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTT 180
Query 277 CTGATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGT 314
||||||||||| ||||||||| ||||||| ||| ||||
Sbjct 181 CTGATAGCTTACCTCGTCGCGTCGTTGATAGATGCGGT 218
> Ahg920387 jgi|Araly1|920387|scaffold_101668.1
Length=308
Score = 298 bits (161), Expect = 9e-80
Identities = 199/218 (91%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 97 GTTTATTTCTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTAGGATTCTTCC 156
|||||| ||||||||||||||||||||||| | | |||||||||||| ||||||||||
Sbjct 1 GTTTATCACTTTCCGTGATCAATGCAAGAAACAATAAAAAACGTGCGGTGGGATTCTTCC 60
Query 157 ATCCGTACACGAACGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCCGTTAAAGCCA 216
||||||||||||||||||||||| | ||||||||||||||||| ||||| || |||||||
Sbjct 61 ATCCGTACACGAACGACGGTGGCAGTGGCGAGAGAGTGCTCTGATGCGCAGTCAAAGCCA 120
Query 217 TTCAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTT 276
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GCCAAGAGGAAACTCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTT 180
Query 277 CTGATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGT 314
||||||||||| ||||||||| ||||||| ||| ||||
Sbjct 181 CTGATAGCTTACCTCGTCGCGTCGTTGATAGATGCGGT 218
> Ahg940070 jgi|Araly1|940070|scaffold_600614.1
Length=308
Score = 292 bits (158), Expect = 4e-78
Identities = 198/218 (91%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 97 GTTTATTTCTTTCCGTGATCAATGCAAGAAAGAGCAGAAAACGTGCGGTAGGATTCTTCC 156
|||||| ||||||||||||||||||||||| | | |||||||||||| ||||||||||
Sbjct 1 GTTTATCACTTTCCGTGATCAATGCAAGAAACAATAAAAAACGTGCGGTGGGATTCTTCC 60
Query 157 ATCCGTACACGAACGACGGTGGCGGCGGCGAGAGAGTGCTCTGGTGCGCCGTTAAAGCCA 216
||||||||||||||||||||||| | ||||||||||||||||| ||||| || |||||||
Sbjct 61 ATCCGTACACGAACGACGGTGGCAGTGGCGAGAGAGTGCTCTGATGCGCAGTCAAAGCCA 120
Query 217 TTCAAGAGGAAAATCCCGATCTTGACTGTGTCATCTTCACCGGAGATCATGACTCTTCTT 276
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 GCCAAGAGGAAACTCCCGATCTTGACTGTGTCATCTTCACAGGAGATCATGACTCTTCTT 180
Query 277 CTGATAGCTTAGCTCGTCGCGCCGTTGATCGATTCGGT 314
||||||||||| ||||||||| ||||||| ||| ||||
Sbjct 181 CTGATAGCTTACCTCGTCGCGTCGTTGATAGATGCGGT 218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63877340865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5