BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40200.1
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483066 jgi|Araly1|483066|fgenesh2_kg.4__2126__AT2G40200.1 1110 0.0
Ahg497265 jgi|Araly1|497265|fgenesh2_kg.108__1__AT2G40200.1 1059 0.0
> Ahg483066 jgi|Araly1|483066|fgenesh2_kg.4__2126__AT2G40200.1
Length=770
Score = 1110 bits (601), Expect = 0.0
Identities = 716/772 (93%), Gaps = 5/772 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATTCTTACGACTCAAGCAAGTGGTCTGATTCTACAACTCCATATATGGTCTCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAATTCTTACGACTCAAGCAAGTGGTCTGATTCTACAACTCCATATATGGTCTCA 60
Query 61 TGGTCACTACAATCTGAGTCCTCTGATTCTGATTGGAACCGGTTTAATCTTGGCTTCTCT 120
||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 61 TGGTCGTTACAATCTGAGTCCCCCGATTCTGATTGGAGCCGGTTTAATCTTGGCTTCTCT 120
Query 121 TCTTCCTCCTTCGGTGGTAATTTCCCGGCTGATGATTGTGTCGGTGGGATCGAAAAAGCT 180
| ||| |||| |||| || ||||||||| |||||||||||||||||||| ||||||||
Sbjct 121 TTTTCATCCTCCGGT--TA-TTTCCCGGCGGATGATTGTGTCGGTGGGATTGAAAAAGCA 177
Query 181 GAGTCACTTTCAAGAAGCCACCGTCTAGCGGAGAAAAGACGCCGTGACCGGATAAATTCT 240
||||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||||
Sbjct 178 GAGTCACTTTCAAGAAGCCACCGTCAAGCTGAGAAAAGACGCCGTGGCCGGATTAATTCT 237
Query 241 CACCTCACTGCTCTCCGGAAACTTGTCCCCAATTCCGACAAGTTAGACAAAGCAGCTCTA 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CACCTCACCGCTCTCCGGAAACTTGTCCCCAATTCCGACAAGTTAGACAAAGCAGCTCTA 297
Query 301 TTAGCAACAGTGATTGAACAAGTGAAAGAACTCAAACAAAAAGCAGCAGAATCACCAATC 360
|||||| ||||||| ||||||||||| || ||||||||||||||| |||||||||||| |
Sbjct 298 TTAGCATCAGTGATAGAACAAGTGAAGGAGCTCAAACAAAAAGCAACAGAATCACCAAGC 357
Query 361 TTCCAAGATCTTCCAACAGAAGCAGATGAAGTAACTGTACAGCCTGAAACTATCTCTGAC 420
||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 358 TTCGAAGATCTTCCAACAGAAGCAGATGAAGTAACTGTTCAGCCTGAAACCATCTCTGAC 417
Query 421 TTTGAATCAAACACAAACACAATCATCTTCAAAGCTTCTTTTTGCTGCGAAGATCAACCC 480
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 TTTGAATCAAATACAAATACAATCATCTTCAAAGCTTCGTTTTGCTGCGAAGATCAACCC 477
Query 481 GAAGCAATCTCAGAGATTATTAGAGTTCTCACAAAGCTTCAA-CTCGAAACAATCCAAGC 539
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 478 GAAGCAATCTCAGAGATCATTAGAGTTCTCACAAAGCTA-AATCTCGAAACAATCCAAGC 536
Query 540 AGAGATAATCTCTGTTGGGGGAAGAATGAGAATCAATTTCATCTTAAAAGATAGCAACTG 599
|| || || | ||| || | |||||||||||||||||||||| ||||||||||||||||
Sbjct 537 TGAAATCATGTGTGTAGGAGAAAGAATGAGAATCAATTTCATCCTAAAAGATAGCAACTG 596
Query 600 CAATGAGACTACAAACATAGCTGCTTCAGCAAAAGCTTTGAAGCAATCTCTCTGCTCTGC 659
||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 597 CAATGAGACGACAAACATAGCTGCATCAGCAAAAGCTTTGAAGCAATCTCTCTGCGCTGC 656
Query 660 GTTAAATCGAATCACATCTTCTTCTACGACTACTTCTTCAGTTTGCAGAATCAGAAGTAA 719
|||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 657 GTTAAACCGAATCACATCTTCTTCTTCAACTACTTCTTCAGTTTGCAGAATCAGAAGCAA 716
Query 720 AAGACAGAGATGGTTCCTCTCTTCTCATTATTCTCACAATGAATAAATTTCA 771
|||||| |||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 717 AAGACAAAGATGGTTCCTCTCTTCTCACTACTCTCACAATGAATAAATCTCA 768
> Ahg497265 jgi|Araly1|497265|fgenesh2_kg.108__1__AT2G40200.1
Length=728
Score = 1059 bits (573), Expect = 0.0
Identities = 680/732 (93%), Gaps = 5/732 (1%)
Strand=Plus/Plus
Query 1 ATGGAGAATTCTTACGACTCAAGCAAGTGGTCTGATTCTACAACTCCATATATGGTCTCG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGAATTCTTACGACTCAAGCAAGTGGTCTGATTCTACAACTCCATATATGGTCTCA 60
Query 61 TGGTCACTACAATCTGAGTCCTCTGATTCTGATTGGAACCGGTTTAATCTTGGCTTCTCT 120
||||| |||||||||||||| | ||||||||||||| ||||||||||||||||||||||
Sbjct 61 TGGTCGTTACAATCTGAGTCCCCCGATTCTGATTGGAGCCGGTTTAATCTTGGCTTCTCT 120
Query 121 TCTTCCTCCTTCGGTGGTAATTTCCCGGCTGATGATTGTGTCGGTGGGATCGAAAAAGCT 180
| ||| |||| |||| | |||||||||| |||||||||||||||||||| ||||||||
Sbjct 121 TTTTCATCCTCCGGT--T-ATTTCCCGGCGGATGATTGTGTCGGTGGGATTGAAAAAGCA 177
Query 181 GAGTCACTTTCAAGAAGCCACCGTCTAGCGGAGAAAAGACGCCGTGACCGGATAAATTCT 240
||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct 178 GAGTCACTTTCAAGAAGCCACCGTCAAGCTGAGAAAAGACGCCGTGACCGGATTAATTCT 237
Query 241 CACCTCACTGCTCTCCGGAAACTTGTCCCCAATTCCGACAAGTTAGACAAAGCAGCTCTA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CACCTCACTGCTCTCCGGAAACTTGTCCCCAATTCCGACAAGTTAGACAAAGCAGCTCTA 297
Query 301 TTAGCAACAGTGATTGAACAAGTGAAAGAACTCAAACAAAAAGCAGCAGAATCACCAATC 360
|||||| ||||||| ||||||||||| || ||||||||||||||| |||||||||||| |
Sbjct 298 TTAGCATCAGTGATAGAACAAGTGAAGGAGCTCAAACAAAAAGCAACAGAATCACCAAGC 357
Query 361 TTCCAAGATCTTCCAACAGAAGCAGATGAAGTAACTGTACAGCCTGAAACTATCTCTGAC 420
||| |||||||||||||||||||||||||||||||||| |||| |||||| |||||||||
Sbjct 358 TTCGAAGATCTTCCAACAGAAGCAGATGAAGTAACTGTTCAGCTTGAAACCATCTCTGAC 417
Query 421 TTTGAATCAAACACAAACACAATCATCTTCAAAGCTTCTTTTTGCTGCGAAGATCAACCC 480
||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 TTTGAATCAAATACAAATACAATCATCTTCAAAGCTTCGTTTTGCTGCGAAGATCAACCC 477
Query 481 GAAGCAATCTCAGAGATTATTAGAGTTCTCACAAAGCTTCAA-CTCGAAACAATCCAAGC 539
||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||
Sbjct 478 GAAGCAATCTCAGAGATCATTAGAGTTCTCACAAAGCTA-AATCTCGAAACAATCCAAGC 536
Query 540 AGAGATAATCTCTGTTGGGGGAAGAATGAGAATCAATTTCATCTTAAAAGATAGCAACTG 599
|| || || | ||| || | |||||||||||||||||||||| ||||||||||||||||
Sbjct 537 TGAAATCATGTGTGTAGGAGAAAGAATGAGAATCAATTTCATCCTAAAAGATAGCAACTG 596
Query 600 CAATGAGACTACAAACATAGCTGCTTCAGCAAAAGCTTTGAAGCAATCTCTCTGCTCTGC 659
||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 597 CAATGAGACGACAAACATAGCTGCATCAGCAAAAGCTTTGAAGCAATCTCTCTGCGCTGC 656
Query 660 GTTAAATCGAATCACATCTTCTTCTACGACTACTTCTTCAGTTTGCAGAATCAGAAGTAA 719
|||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 657 GTTAAACCGAATCACATCTTCTTCTTCAACTACTTCTTCAGTTTGCAGAATCAGAAGCAA 716
Query 720 AAGACAGAGATG 731
|||||| |||||
Sbjct 717 AAGACAAAGATG 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30612702351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5