BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40220.1
Length=987
Score E
Sequences producing significant alignments: (Bits) Value
Ahg901971 jgi|Araly1|901971|Al_scaffold_0004_2621 1120 0.0
> Ahg901971 jgi|Araly1|901971|Al_scaffold_0004_2621
Length=879
Score = 1120 bits (606), Expect = 0.0
Identities = 708/756 (94%), Gaps = 12/756 (2%)
Strand=Plus/Plus
Query 1 ATGGACCCTTTAGCTTCCCAACATCA--A-CACAACCATCTGGAAGATAATAACCAAACC 57
||||||||||||||||||||||| || | ||| ||||||| || |||| | ||||||||
Sbjct 1 ATGGACCCTTTAGCTTCCCAACAACACCACCACCACCATCTTGACGATACTGACCAAACC 60
Query 58 CTAACCCATAATAATCCTCAATCCGATTCCACCACCGACTCATCAACTTCCTCCGCTCAA 117
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CTAACCCACAATAATCCTCAATCCGATTCCACCACCGACTCATCAACCTCCTCCGCTCAA 120
Query 118 CGCAAACGCAAAGGCAAAGGTGGTCCGGACAACTCCAAGTTCCGTTACCGTGGCGTTCGA 177
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 121 CGCAAACGCAAAGGCAAAGGTGGTCCTGACAACTCCAAATTCCGTTACCGTGGCGTTCGA 180
Query 178 CAAAGAAGCTGGGGCAAATGGGTCGCCGAGATCCGAGAGCCACGTAAGCGCACTCGCAAG 237
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAAAGAAGCTGGGGAAAATGGGTCGCCGAGATCCGAGAGCCACGTAAGCGCACTCGCAAG 240
Query 238 TGGCTTGGTACTTTCGCAACCGCCGAAGACGCCGCACGTGCCTACGACCGGGCTGCCGTT 297
||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 241 TGGCTTGGTACTTTCGCCACCGCCGAAGACGCCGCACGTGCCTACGACCGAGCCGCCGTT 300
Query 298 TACCTATACGGGTCACGTGCTCAGCTCAACTTAACCccttcgtctccttcctccgtctct 357
|| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 301 TATCTCTACGGGTCACGTGCTCAGCTAAACTTAACCCCTTCTTCTCCTTCCTCCGTCTCT 360
Query 358 tcctcttcctcctccgtctccgccgcttcttctccttccacctcctcttcctccactcaa 417
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 TCCTCTTCCTCCTCCGTCTCCGCCACTTCTTCTCCTTCCACCTCCTCTTCCTCCACTCAA 420
Query 418 accctaagacctctcctccctcGCCCCGCCGCCGCCACCGTAGGAGGAGGAGCCAACTTT 477
|||||||||||||||||||||||||||||||||||||| || ||||||||||| | ||||
Sbjct 421 ACCCTAAGACCTCTCCTCCCTCGCCCCGCCGCCGCCACTGTCGGAGGAGGAGCTACCTTT 480
Query 478 GGTCCGTACGGTATCCCTTTTAACAACAACATCTTCCTTAATGGTGGGACCTCTATGTTA 537
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGACCGTACGGTATCCCTTTTAACAACAACATCTTCCTTAATGGTGGGACCTCTATGTTA 540
Query 538 TGCCCTAGTTATGGTTTT-TTCC-CTc-aacaacaacaacaacaaAATCAGATGGTCCA- 593
||||||||||||||| || |||| | | |||||||||||||||||||||||||||||||
Sbjct 541 TGCCCTAGTTATGGTCTTCTTCCTCACCAACAACAACAACAACAAAATCAGATGGTCCAA 600
Query 594 GATGGGACAATTCCAACACCAACAGTATCAGAATCTTCA-TTCTAATACTAACAATAACA 652
| ||||||||||||||||||||||||||||||||||||| || || |||||| ||||| |
Sbjct 601 G-TGGGACAATTCCAACACCAACAGTATCAGAATCTTCACTT-TAGTACTAATAATAATA 658
Query 653 AGATTT-CTGACATCGAGCTCACTGATGTTCCGGTAACTAATTCGACTTCGTTTCATCAT 711
||||| | || || |||||||||||||||||||| |||||| |||||||||||||||
Sbjct 659 AGATTGGC-GAGATGGAGCTCACTGATGTTCCGGTTGTTAATTCCACTTCGTTTCATCAT 717
Query 712 GAGGTGGCGTTAGGGCAGGAACAAGGAGGAAGTGGG 747
||||||||||||||||||||||||||||||||||||
Sbjct 718 GAGGTGGCGTTAGGGCAGGAACAAGGAGGAAGTGGG 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36674246154
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5