BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40230.1
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483068 jgi|Araly1|483068|fgenesh2_kg.4__2128__AT2G40230.1 2289 0.0
> Ahg483068 jgi|Araly1|483068|fgenesh2_kg.4__2128__AT2G40230.1
Length=1584
Score = 2289 bits (1239), Expect = 0.0
Identities = 1375/1441 (95%), Gaps = 8/1441 (1%)
Strand=Plus/Plus
Query 63 atatatatataatacacataGCAGAGACCCACCTTGTTGTTTATTTCTGAAGAAGAAGAA 122
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 84 ATATATATATAATACACATTGCAGAGACCCACCTTGTTGTTTATTTCTGAAGAAGAAGAA 143
Query 123 AAACAGAGCATCATAAGAAGaaaaaaa-aaaGCAATGGGATCCTTAGTTCATGTGAAAGA 181
|||||||||||| ||| || ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 144 AAACAGAGCATCCTAA-AA-AAAAAAACAAACCAATGGGATCCTTAGTTCATGTGAAAGA 201
Query 182 AGCCACAGTTATTACTCCTTCCGACCAAACACCTTCTTCTGTTCTGTCTCTCTCCGCTTT 241
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 202 AGCCACAGTTATTACTCCTTCCGACCAAACACCTTCTTCTGTTCTGCCTCTCTCCGCTTT 261
Query 242 AGATTCTCAGCTTTTCCTCCGATTCACCATTGAATACCTCCTCGTTTACCCACCCGTTTC 301
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 262 AGATTCTCAGCTTTTCCTCCGTTTCACCATTGAATACCTCCTCGTTTACCCACCCGTTTC 321
Query 302 CGACCCGGAGTATtctctctccggtcgtctcaaatccgctctctctcgcgctctcGTTCC 361
||||||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 322 CGACCCGGATTACTCTCTCTCCGGCCGTCTCAAATCCGCTCTATCTCGCGCTCTCGTTCC 381
Query 362 TTACTTCCCTTTCTCCGGCCGCGTCCGAGAAAAACCCGACGGCGGCGGAGGTCTCGAGGT 421
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 382 TTACTTCCCTTTCTCCGGCCGCGTCCGGGAAAAACCCGACGGCGGCGGAGGTCTCGAGGT 441
Query 422 CAATTGCCGTGGCCAAGGTGCTCTGTTTCTTGAAGCCGTCTCTGACATCCTCACGTGCCT 481
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 442 CAATTGCCGTGGCCAAGGTGCTCTGTTTCTTGAAGCCGTCTCTGATATCCTCACGTGCCT 501
Query 482 TGACTTTCAGAAACCTCCCCGGCACGTGACTAGCTGGAGAAAGCTTCTTTCGCTCCACGT 541
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 502 TGACTTTCAGAAACCTCCCCGGCACGTGACTAGCTGGAGAAAGCTTCTTTCACTCCACGT 561
Query 542 CATCGATGTCCTCGCTGGTGCTCCACCTCTCGTCGTTCAGCTCACTTGGCTCCGTGACGG 601
||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 562 CATCGATGTCCTCGCTGGTGCTCCACCTCTCGTAGTTCAGCTGACATGGCTCCGTGACGG 621
Query 602 TGGTGCTGCTTTAGCCGTCGGTGTTAACCACTGCGTCTCCGATGGAATCGGTAGCGCCGA 661
||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 622 TGGTGCTGCCTTGGCCGTCGGTGTTAACCACTGCGTCTCCGATGGAATCGGCAGCGCTGA 681
Query 662 GTTTCTCACTTTATTCGCCGAGTTATCTAAAGACTCACTGAGTCAAACCGAGTTAA-AAC 720
||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| |
Sbjct 682 GTTTCTCACTTTATTCGCCGACTTATCTAAAGACTCGCTGAGTCTAACCGAGTTAAGGA- 740
Query 721 GGAAACATCTCTGGGATCGTCAATTGCTTATGCCGTCTCCGATTCGTGACTCGTTGAGTC 780
||||||| ||||||||||| |||||||||||||||||||||| ||||||||| ||||| |
Sbjct 741 GGAAACACCTCTGGGATCGCCAATTGCTTATGCCGTCTCCGACTCGTGACTCATTGAGCC 800
Query 781 ATCCCGAGTTCAACCGTGTTCCCGATCTATGCGGATTCGTTAACCGATTCAACGCCGAGC 840
|||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||
Sbjct 801 ATCCCGAGTTTAACCGAGTTCCCGATCTATGCGGATTTGTCAACCGATTCAACGCCGAGC 860
Query 841 GACTCGTTCCTACATCGGTTGTCTTCGAGAGACAGAAACTTAACGAGCTAAAGAAACTCG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 GACTCGTTCCTACATCGGTTGTCTTCGAGAGACAGAAACTTAACGAGCTAAAGAAACTCG 920
Query 901 CGAGTCGACTCGGTGAGTTCAATTCTAAACACACATCGTTCGAGGTACTCTCTGCACATG 960
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 921 CGAGTCGACTCGGTGAGTTCAATTCGAAACACACATCGTTCGAGGTACTCTCTGCACATG 980
Query 961 TATGGCGGAGCTGGGCGAGATCACTGAACTTGCCATCGAATCAGGTCCTTAAGCTTTTGT 1020
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 981 TTTGGCGGAGCTGGGCGAGATCACTGAACTTGCCATCGAATCAAATCCTTAAGCTTTTGT 1040
Query 1021 TTAGCGTCAACATTAGAGACCGAGTCAAACCGAGTCTACCCAGTGGGTTCTACGGGAACG 1080
|||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1041 TTAGTATCAACATTAGAGACCGAGTCAAACCGAGTCTGCCCAGTGGATTCTACGGGAACG 1100
Query 1081 CATTCGTCGTCGGATGTGCTCAAACCACCGTGAAAGACTTGACGGAGAAAGGATTAAGCT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1101 CATTCGTCGTCGGATGTGCTCAAACCACCGTGAAAGACTTGACGGAGAAAGGATTAAGCT 1160
Query 1141 ACGCGACGATGCTCGTGAAACAAGCGAAGGAGCGAGTCGGTGACGAGTACGTCAGATCGG 1200
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1161 ACGCGACGATGCTCGTGAAACAAGCGAAGGAACGAGTCGGCGACGATTACGTCAGATCGG 1220
Query 1201 TGGTGGAAGCTGTGAGCAAGGAGAGAGCGAGTCCTGACTCGGTTGGAGTCTTGATATTGT 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1221 TGGTGGAAGCTGTGAGCAAGGAGAGAGCGAGTCCTGACTCGGTTGGAGTCTTGATACTGT 1280
Query 1261 CGCAATGGTCACGTCTCGGTTTAGAGAAGCTTGATTTTGGTTTGGGTAAACCGGTTCATG 1320
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1281 CGCAGTGGTCACGACTCGGTTTAGAGAAGCTTGATTTCGGTTTGGGTAAACCGGTTCATG 1340
Query 1321 TTGGATCGGTCTGTTGCGACCGTTACTGTTTGTTGCTTCCGATTCCTGAACAAAATGACG 1380
| |||||||| |||||||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 1341 TAGGATCGGTTTGTTGCGACCGTTACTGTTTGTTGCTTCCGGTTCCTGAACGAAGTGACG 1400
Query 1381 CCGTTAAAGTAATGGTCGCCGTTCCGTCAAGCTCTGTTGACACGTACGAGAATCTTGTGA 1440
||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||
Sbjct 1401 CCGTTAAAGTAATGGTCGCAGTTCCGTCAAGCGCCGTTGACACCTACGAGAATCTTGTGA 1460
Query 1441 CGAGTCCTAACGCTTAGATTAGAGAAAGGATAAATTCTAAttttttactctttacgtttt 1500
||||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||
Sbjct 1461 CGAGTCCTAACGCTTAGATTAAAGAAAGGATAAATTCTAATTTTTT--T-TTTACCTTTT 1517
Query 1501 t 1501
|
Sbjct 1518 T 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61858557880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5