BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40240.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934816 jgi|Araly1|934816|scaffold_402804.1 1580 0.0
> Ahg934816 jgi|Araly1|934816|scaffold_402804.1
Length=1057
Score = 1580 bits (855), Expect = 0.0
Identities = 971/1027 (95%), Gaps = 8/1027 (1%)
Strand=Plus/Plus
Query 8 ATCAATTTGGGAAACTCAATGTCTCTTCTCCGGCGACGATTCGTGAAACAATCAGTTAAT 67
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3 ATCAATTTGTGAAACTCAATGTCTCTTCTCCGGCGACGATTTATGAAACAATCAGTTAAT 62
Query 68 TGCATAACATTCCTTCAAATCCTCGCCGAGCGATCCTTCTCCACCGTGAAGATTCCTCCA 127
| || |||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||
Sbjct 63 TCCAGAACATTCCTTCATATCCTCGCCGATCGATCGTTCTCCACCGTGAAGATTCCTTCA 122
Query 128 GGTCGTCGCAAAACCACCGAATTCGACAAACTTATCAACGAAGCTGGCAGCTCCGGCGAT 187
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 GGCCGTCGCAAAACCACCGAATTCGACAAACTTATCAACGAAGCTGGCAGCTCCGGCGAT 182
Query 188 TTCGAGACCGTACGCCGTCTCCTAAACAACCGTATAGTTCTCGGATCTTTCAACACGAGC 247
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 183 TTCGAGACCGTACGCCGTCTTCTAAACAACCGTATAGTGCTCGGATCTTTCAACACGAGC 242
Query 248 GACACATTCAAATTCCTCACCAACACCGCT-TCATACTCCTCCTATTTAGAAGATCTCCG 306
|| || |||||||||||||| ||||||| | |||||||||||| |||||||||| ||||
Sbjct 243 GAAACTTTCAAATTCCTCACAAACACCG-TCTCATACTCCTCCGCTTTAGAAGATATCCG 301
Query 307 CCGCGTTTTGCCTCAGATCGACGGCGGTTTCTCGCGGAAAAACGCTTACGACATTTTAAT 366
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CCGTGTTTTACCTCAGATCGACGGCGGTTTCTCGCGGAAAAACGCTTACGACATTTTAAT 361
Query 367 CTCTCGTCTCTGTAAGCTCGGACGCATCGACGACGCTTTAATCGTTATCGGAGACATGTC 426
|||||||||||| |||||||| |||||||||||||| |||||||| |||||||| |||||
Sbjct 362 CTCTCGTCTCTGCAAGCTCGGCCGCATCGACGACGCGTTAATCGTGATCGGAGATATGTC 421
Query 427 TAACGGGAGATTAGGCTTAACGCCGTCGACATATCACCCGATCTTGTGCTCGCTCACGAG 486
||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 422 TAACGGGAGATCAGGCTTAACGCCGTCGACATTTCACCCGATTTTGTGCTCGCTCACGAG 481
Query 487 GAAGTACAAAATCGAAGAAGCTTGGAGAGTTGTTGAATCGATGAGATCCAAATCGGTTTC 546
|||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||| |
Sbjct 482 GAAGAACAAAATCGAAGAGGCTTGGCGAGTTGTTGAATCGATGAGATCCAAATCCGTTCC 541
Query 547 GATGGATGTGACGGCGTACAATTACTTCCTTACTTCGCATTGTTACGACGGCGAATTGGA 606
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 542 GATGGATGTGACGGCGTACAACTACTTCCTTACTTCGCATTGTTACGACGGCGAAATGGA 601
Query 607 ATCGGCTAGCGAGGTGATGCGTAAGATTGAAGAAGACGGGAATTCGC--CGGATTCGCGT 664
|||||| ||||||||||||||||||||||||||||||||| | || | |||||||||||
Sbjct 602 ATCGGCGAGCGAGGTGATGCGTAAGATTGAAGAAGACGGG-A-TCCCTACGGATTCGCGT 659
Query 665 AGCTACGACGCGCTTGTGCTCGGCGCGTGTAGGGC-GGGTAAAGTGGAAGCGGCGATGGC 723
||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 660 AGCTACGACGCGCTTGTACTCGGCGCGTGTAGGGCTGGG-AAAGTGGAAGCGGCGATGGC 718
Query 724 GATATTGAGGAGGATGGAGGAGGATGGTGTGACTGTGTTGTACTCGACGCATGCGCACGT 783
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 GATATTGAGGAGGATGGAGGAGGATTGTGTGACTGTGTTGTACTCGACGCATGCGCACGT 778
Query 784 TATAACGGGGTTAGTGGAGGGAGGCTATTATGCGCTGGGTTTGGAGTTTGTGATGGCTTA 843
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 TATAGCGGGGTTGGTGGAGGGAGGCTATTATGCGCTGGGTTTGGAGTTTGTGATGGCTTA 838
Query 844 CGCCGGAAAAGATTTGAGGTTGGATAGTGAGAGTTTTGGTTTTTTGGCTGGTAAGCTTGT 903
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 839 CGCCGGAAAAGATTTGGGGTTGGATAGTGAGAGTTTTGGGTTTTTGGCTGGTAAGCTTGT 898
Query 904 GAAGAGGAAGAGGTATGAAGAAGCGATGATTGTTGTGAAAGAGATGGTTATGAGAGGATT 963
|||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 899 GAAGAGGAAGAGATTTGAAGAAGCCAAGATTGTTGTGAAAGAGATGGTTATGAGAGGATT 958
Query 964 GAGAATGGGTGATGAATTGAGACAATTCTATGAAGGAAATGTGAGATACGATGATGATGA 1023
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 GAGAATGGGTGATGAATTGAGACAATTCTATGAAGGAAATGTGAGAAACGATGATGATGA 1018
Query 1024 TGAAGAT 1030
|||||||
Sbjct 1019 TGAAGAT 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5