BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40250.1
Length=1086
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321717 jgi|Araly1|321717|fgenesh1_pm.C_scaffold_4001774 1690 0.0
> Ahg321717 jgi|Araly1|321717|fgenesh1_pm.C_scaffold_4001774
Length=1086
Score = 1690 bits (915), Expect = 0.0
Identities = 1031/1088 (95%), Gaps = 4/1088 (0%)
Strand=Plus/Plus
Query 1 ATGAACCGTAATCAACACAAACCAATGTTTGTTACATTCCTCATCAATATTCTTCTCCTC 60
||||||| ||||| |||| |||||||||| ||||||||||||||| | |||||||| ||
Sbjct 1 ATGAACCCTAATCTTCACATACCAATGTTTCTTACATTCCTCATCACTCTTCTTCTCTTC 60
Query 61 CAACTTCTAAACCTTACCAATGCATCACCATCCCCACCAATAACAGCCCTATACGCCTTC 120
|||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 61 CAACTTCTAAACCTTACCAATGCATCGCCATCCCCACCTATAACAGCCGTATACGCCTTC 120
Query 121 GGCGACTCCACAGTGGACTCCGGTAACAACAATTACATTCCC-ACTCTTTTCCAGAGCAA 179
|| |||||||| ||||| ||||||||||||||||||| |||| ||||||||||| |||||
Sbjct 121 GGTGACTCCACGGTGGATTCCGGTAACAACAATTACA-TCCCTACTCTTTTCCAAAGCAA 179
Query 180 CCATCCTCCCTATGGTAAATCCTTTCCGTCCAAACTCTCCACCGGAAGGTTCTCCGACGG 239
||||||||| ||||| ||||| |||||| ||||||||||||||||||| |||||||| ||
Sbjct 180 CCATCCTCCATATGGCAAATCATTTCCGGCCAAACTCTCCACCGGAAGATTCTCCGATGG 239
Query 240 AAAACTCGCCACCGACTTCATAGTCTCCTCTCTAGGACTCAAACCCACTCTACCAGCTTA 299
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 240 AAAACTCGCCACCGACTTCATAGTCTCCTCTCTAGGACTTAAACCCACTTTACCAGCTTA 299
Query 300 CCTCAACCCTTCGGTCAAACCTGTAGATCTTTTGACCGGCGTTAGTTTCGCCTCGGCCGG 359
||||||||||||||||||||| || || |||||||||||||||||||| |||||||||||
Sbjct 300 CCTCAACCCTTCGGTCAAACCCGTTGACCTTTTGACCGGCGTTAGTTTTGCCTCGGCCGG 359
Query 360 AGGTGGTTTAGATGATCGGACGGCAAAGTCATCATTGACTATT-ACCATGGACAAGCAAT 418
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 360 AGGTGGTTTAGATGATCGGACGGCAAAGTCATCATTGACT-TTGACCATGGACAAGCAAT 418
Query 419 GGAGTTACTTCGAAGAGGCGCTGGGTAAAATGAAGAGTTTGGTTGGAGACTCGGAGACTA 478
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 419 GGAGTTACTTCGAAGAGGCGCTAGGTAAAATGAAGAGTTTGGTTGGAGATTCGGAGACTA 478
Query 479 ATCGGGTGATTAAGAATGCTGTGTTCGTCATTAGTGCGGGGACTAATGATATGATCTTTA 538
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 479 ATCGGGTGATTAAGAATGCTGTGTTCGTCATTAGTGCGGGCACTAATGATATGATCTTTA 538
Query 539 ATGTTTACGATCATGTTCTTGGGAGTTTGATCTCCGTTTCGGATTATCAAGATTCTCTAC 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATGTTTACGATCATGTTCTTGGGAGTTTGATCTCCGTTTCGGATTATCAAGATTCTCTAC 598
Query 599 TAACCAAAGTCGAAGTTTTTGTCCAGAGACTATACGAGGCAGGAGCACGAAGGATTACAA 658
| | |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 599 TCAGCAAAGTCGAAGTTTTTGTTCAGAGACTATACGACGCAGGAGCACGAAGGATTACAA 658
Query 659 TAGCTGGACTACCACCAATCGGATGCCTTCCGGTGCAAGTAACACTTACTAGCATCAATA 718
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
Sbjct 659 TAGCTGGACTACCACCAATCGGATGCCTTCCGGTGCAAGTAACACTTGCTAGCGTCAAAA 718
Query 719 CTCCTCGCATCTTCCATCATCGGATCTGTACGGAACATCAGAACGATGATTCTCGGGTTT 778
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 719 CTCCTCGCATCTTCCATCATCGGATATGTACGGAAAATCAGAACGATGATTCTCGGGTTT 778
Query 779 ACAATCAAAAGCTACAGAAGCTAATCTTCGGTCTCAGTCAGAGGTTTCGAGGTTCCAAAG 838
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 779 ACAATAAAAAGCTACAGAAGCTAATCTTCCGTCTCAGTCAGAGGCTTCGAGGTTCCAAAG 838
Query 839 TTCTTTACCTTGATATCTACTCTCCGTTAATAGACATGATCAAACATCCTCGTAAATACG 898
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTCTTTACCTCGATATTTACTCTCCGTTAATAGACATGATCAAACATCCTCGTAAATACG 898
Query 899 GACTAGAGGAAACATTGAGAGGATGTTGTGGGACAGGGCTACTTGAGGCAGGACCTCTAT 958
|||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||
Sbjct 899 GACTAGAGGAAACATTGAGAGGATGTTGCGGGACGGGGCTGCTTGAAGCAGGACCTCTAT 958
Query 959 GCCAACCATTGTCTCGGACTTGTGACGATGTTTCCAAGTATTTATTCTTTGATTCTGTGC 1018
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 GCCAGCCATTGTCTCGGACTTGTGACGATGTTTCCAAGTATTTGTTCTTTGATTCTGTGC 1018
Query 1019 ATCCTTCACAGACGGCTTATTCTGTCATCGCTAGTTTCGCCTTACAAAAATTGTTTCCTC 1078
|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1019 ATCCTTCACAGAAGGCTTATTCTGTCATTGCTAGTTTCGCCTTACAAAATTTGTTTCCTC 1078
Query 1079 TCCTCTAA 1086
||||||||
Sbjct 1079 TCCTCTAA 1086
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40448414937
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5