BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40260.1
Length=1233
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321718 jgi|Araly1|321718|fgenesh1_pm.C_scaffold_4001775 1964 0.0
> Ahg321718 jgi|Araly1|321718|fgenesh1_pm.C_scaffold_4001775
Length=1236
Score = 1964 bits (1063), Expect = 0.0
Identities = 1181/1238 (95%), Gaps = 7/1238 (1%)
Strand=Plus/Plus
Query 1 ATGAGATCAAGCAGCCAAAATTCTGAAAACTCCAAGACTTGTCTATCTAACAACATCAAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGAGATCAAGCAGCCAAAATTCTGAAAACTCCAAGACTTGTCTATCTAACAACTTCAAA 60
Query 61 GCAACCACCaagaatgaagaagataaagatgaagaggatgatgaagaaggcgaagaggat 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAACCACCAAGAACGAAGAAGATAAAGATGAAGAGGATGATGAAGAAGGCGAAGAGGAT 120
Query 121 gaagaagagagatctggagatcagagCCCATCTAGCAATAGCTATGAGGAAGAGAGTGGG 180
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 GAAGAAGAGAGATCGGGAGATCAGAGCCCATCTAGCAATAGCTATGTGGAAGAGAGTGGG 180
Query 181 AGTCACCA-C--CATGATCAGAACAAGAAGAATGGAGGATCCGTGAGGCCGTACAACCGC 237
|||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AGTCACCATCATCATGATCAGAACAAGAAGAATGGTGGATCCGTGAGGCCGTACAACCGC 240
Query 238 TCAAAGACTCCGAGGCTGCGATGGACGCCGGAGCTCCATATTTGCTTTCTTCAAGCTGTG 297
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TCAAAGACTCCAAGGCTGCGATGGACACCGGAGCTCCATATTTGCTTTCTTCAAGCTGTG 300
Query 298 GAGAGATTGGGTGGCCCAGATAGAGCAACACCGAAGCTTGTTCTCCAATTGATGAACGTC 357
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 301 GAGAGATTGGGTGGACCAGATAGAGCAACACCAAAGCTTGTTCTTCAATTGATGAACGTC 360
Query 358 AAGGGGCTAAGTATTGCCCATGTTAAGAGTCATCTTCAGATGTACAGAAGCAAGAAGACC 417
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||
Sbjct 361 AAGGGGCTAAGTATTGCCCATGTCAAGAGCCATCTTCAGATGTACAGGAGCAAAAAGACC 420
Query 418 GATGAGCCTAATGAAGGAGATCAAGGATTTTCGTTTGAACACGGAGCTGGTTACACTTAC 477
||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 421 GATGACCCTAACCAAGGAGATCAAGGATTTTCTTTTGAACACGGAGCCGGTTACACTTAC 480
Query 478 AACCTTAGCCAACTTCCAATGCTACAAAGTTTTGATCAAAGGCCTTCTTCTAGTTTAGGA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AACCTTAGCCAACTTCCAATGCTACAAAGTTTTGATCAAAGGCCTTCTTCTAGTTTAGGA 540
Query 538 TATGGTGGTGGTTCGTGGACTGACCACAGACGACAGATCTACCGTAGCCCTTGGAGAGGA 597
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TACGGAGGTGGTTCGTGGACTGACCACAGACGACAGATCTACCGTAGCCCTTGGAGAGGC 600
Query 598 TTAACGACACGAGAAAATACAAGAACAAGACAAACAATGTTTAGCTCACAGCCTGGTGAG 657
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 601 TTAACGACACGAGACAATACAAGAACAAGACAAACACTGTTTAGCTCACAGCCTGGCGAG 660
Query 658 AGATAT-CACGGAGTTAGCAATAGTATTCTTAACGATAAGAACAAAACTATTTCATTTCG 716
|||| | || ||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 661 AGAT-TCCAAGGAGTTAGCAATAGTATTCTTGACGATAAGAACAAAACTATTTCGTTTCG 719
Query 717 AATCAATTCTCATGAAGGGGTTCATGATAACAATGGAGTAGCTGGAGCTGTTCCAAGAAT 776
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 AATCAATTCTCATGAAGGGGTTCATGAGAACAATGGAGTAGCTGGAGCTGTTCCAAGAAT 779
Query 777 TCATAGAAGTTTTCTTGAAGGTATGAAAACGTTTAACAAATCATGGGGACAGAGCCTCTC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TCATAGAAGTTTTCTTGAAGGTATGAAAACGTTTAACAAATCATGGGGACAGAGCCTCTC 839
Query 837 TTCCAATCTTAAGTCCTCCACCGCAACAATACCACAAGATCATATTGCTACAACGCTAAA 896
|||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 840 TTCCAATCCTAAGTCCTCGACCCCAACAATACCACAAGATCATATTGCTACAACACTAAA 899
Query 897 TTCTTATCAATGGGAGAATGCTGGAGTGGCAGAAGGATCAGAGAATGTTTTGAAGAGGAA 956
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 900 TTCTTATCAATGGGAGAATGCTCGAGTGGCAGAAGGATCAGAGAATATTTTGAAGAGGAA 959
Query 957 GAGGTTATTATTTTCTGATGACTGCAATAAGTCAGACCAAGATTTGGATCTAAGCTTGTC 1016
||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 960 GAGATTATTATTGTCTGATGACTGCAGTAAGTCAGACCAAGATTTGGATCTAAGCTTGTC 1019
Query 1017 CCTTAAGGTACCTCGGACACACGACAATCTTGGAGAATGCTTGTTAGAAGATGAAGTAAA 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1020 CCTTAAGGTACCTCGGACACACGACAATCTTGGAGAATGCTTGTTAGAAGATGAAG-AAA 1078
Query 1077 AG-AACATGATGATCATCAAGATATCAAGAGTTTGTCTCTTTCGTTATCATCTTCAGGTT 1135
|| ||||||||||||||||||||| |||| ||||||||||||| ||||| ||||| ||||
Sbjct 1079 AGGAACATGATGATCATCAAGATAGCAAGGGTTTGTCTCTTTCATTATCTTCTTCGGGTT 1138
Query 1136 CATCAAAACTCGACCGAACCATTAGGAAAGAAGATCAAACTGATCACAAAAAGAGAAAGA 1195
|||||| |||| |||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1139 TATCAAACCTCGGCCGAGCCATTAGGAAAGAAGATCAAAGTGATCATAAAAAGAGAAAGA 1198
Query 1196 TTTCGGTCTTGGCAAGTCCCCTTGATCTCACTCTGTGA 1233
|||||||||||||||||||||||||||||||| |||||
Sbjct 1199 TTTCGGTCTTGGCAAGTCCCCTTGATCTCACTTTGTGA 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46052483736
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5