BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40270.1
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
Ahg321719 jgi|Araly1|321719|fgenesh1_pm.C_scaffold_4001776 2148 0.0
Ahg934822 jgi|Araly1|934822|scaffold_402810.1 1855 0.0
Ahg486045 jgi|Araly1|486045|fgenesh2_kg.5__2037__AT3G56050.2 809 0.0
> Ahg321719 jgi|Araly1|321719|fgenesh1_pm.C_scaffold_4001776
Length=1473
Score = 2148 bits (1163), Expect = 0.0
Identities = 1378/1480 (93%), Gaps = 22/1480 (1%)
Strand=Plus/Plus
Query 184 TGTTCAAAATGCGTTCTTTTGTGGCTTTTGTGCTCCTTCTGAGCTGGTTCGGTTCGTGTT 243
||||||||||||||||||| |||||||||||| ||||||| |||| || ||||||||||
Sbjct 2 TGTTCAAAATGCGTTCTTTCGTGGCTTTTGTGATCCTTCTTAGCTACTTGGGTTCGTGTT 61
Query 244 GT-TCTCTCAAGGACCAAGCTGTAGATTTTCTCAAAAGTGAAGATAGTTTAAAGAAAGAT 302
| || ||||| ||| ||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 62 -TCTCGCTCAAAGACAAAGGTGTAGATTTTCTGAAAAGTGAAGATAGTTTAAAGAAAGAT 120
Query 303 CTATCGTCAGATGAAGATTCCACGTATTTGAAAGCTTTTGGATTTCACAGGAAAACACTT 362
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 121 CTATCGTCAGATGAAGATTCAACGAATTTGAAAGCTTTTGGATTTCACAGGAAAACACTT 180
Query 363 GTCCGTAACCCTTACAAAGACTTGCCTTCAAGAAAAGACCGCAAAAACCGTGTTGTGGCT 422
|||||| ||||| ||||||| |||||||| ||||||||||||| |||||| |||||||||
Sbjct 181 GTCCGTTACCCTAACAAAGATTTGCCTTCGAGAAAAGACCGCAGAAACCGCGTTGTGGCT 240
Query 423 GCAACTACAACACCATCATCATCCCCAGAACCTGCTCCAAAACATGTTTCAACTAAAGCT 482
|||||| ||||||||||||||||||| ||||| |||| |||||||||||||||| | ||
Sbjct 241 GCAACTGTAACACCATCATCATCCCCAAAACCTTCTCCTAAACATGTTTCAACTAGATCT 300
Query 483 TCAACAGTTTCAGAGCCACAAAAGAGATCATCTACACAAGATGTTTCACCTTCTCCATCT 542
||||||||| | |||||||||| |||||||||||||||| |||||||||||||||| |||
Sbjct 301 TCAACAGTTCCGGAGCCACAAATGAGATCATCTACACAAAATGTTTCACCTTCTCCTTCT 360
Query 543 GCGCCACTTGCAAACT-CTCCCATTCCAAGAAACTCTCA---TTCTTC--T----GTTCC 592
| | |||||| ||| | |||||| |||||||||| |||| |||||| | |||||
Sbjct 361 GTGTCACTTGTAAA-TCCTCCCACTCCAAGAAACGCTCATTCTTCTTCAGTGGCCGTTCC 419
Query 593 TTTAGTTG-TTGGCTGCGTAGGCGGTGCtttttttCTTCTCCTTGTAGCTACCGGTCTCT 651
||||| || ||||||||||||||||||| ||||||||||| ||||||| ||||||| |||
Sbjct 420 TTTAG-TGATTGGCTGCGTAGGCGGTGCCTTTTTTCTTCTTCTTGTAGTTACCGGTGTCT 478
Query 652 ACTTTTTCACAAGTAAGGCCGGGAAAACTGTGAATCCTTGGCGTACTGGTCTTAGTGGAC 711
||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 479 ACTGTTTCACTAGTAAGGCCGGGAAAACTGTGAATCCTTGGCGTACTGGTCTTAGCGGAC 538
Query 712 AACTTCAGAAAGTATTCGTTACTGGTATTCCTGTACTCAAAAGATCTGAGATTGAAGCTG 771
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 539 AACTTCAGAAAGTATTCGTAACTGGTATACCTGTACTTAAAAGATCTGAGATTGAAGCTG 598
Query 772 CATGTGAAGATTTTAGTAATGTCATTGGATCTTGTCCCATTGGGAAGTTGTTCAAAGGAA 831
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 599 CATGTGAAGATTTTAGTAATGTCATTGGATCTTGCCCCATTGGGAAATTGTTCAAAGGAA 658
Query 832 CATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACTA-CTACTGCCAAAGAC 890
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 659 CATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACTACCT-CTGCCAAAGAC 717
Query 891 TGGAAGGACAGTACAGAAATTCACTTCAGGAAGAAGATCGAAATGTTATCGAAGATCAAC 950
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 718 TGGAAGGACAATACAGAAATTCACTTTAGGAAGAAGATCGAAATGTTATCGAAGATCAAC 777
Query 951 CACAAGAATTTTGCAAACCTTCTTGGTTATTGTGAAGAAAAGGAACCTTTCACCAGGATC 1010
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 778 CACAAGAATTTTGCAAACCTTCTTGGGTATTGTGAAGAAAAGGAACCTTTCACTAGGATC 837
Query 1011 TTGATCTTTGAGTATGCTCCAAATGGATCACTCTTTGAGCATTTACA-TTATAAAGAATC 1069
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 838 TTGATCTTTGAGTATGCTCCAAATGGATCACTCTTTGAGCATTTACACTT-TAAAGAATC 896
Query 1070 AGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGGATTAGCATATTGCCTTGA 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 AGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGGATTAGCATATTGCCTTGA 956
Query 1130 CCATATGCACCAACTCAATCCACCTATAGCTCACACCAATCTCGTCTCATCATCTCTTCA 1189
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 957 CCATATGCACCAACTCAATCCACCTATAGCTCACACCAATCTCGTCTCGTCATCTCTTCA 1016
Query 1190 GCTCACAGAGGATTATGCTGTCAAAGTATCAGATTTCAGTTTCGGTTCATCTGAGACAGA 1249
|||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1017 GCTCACAGAGGATTATGCTGTCAAAGTATCGGATTTCAGTTTCGGTCCATCTGAGACAGA 1076
Query 1250 GACTAACATCAACAACAACACAGTCATAGACACACACATCTCAGCCTTGAATCCAGAAGA 1309
||||| ||||||| ||| || |||||||||||| ||||||||| |||||||||||||||
Sbjct 1077 GACTAGCATCAACGACA-CA--GTCATAGACACAAACATCTCAGTCTTGAATCCAGAAGA 1133
Query 1310 CAACATTTACAGCTTTGGTTTACTGTTATTCGAAATGATAACCGGGAAACTCATAGAATC 1369
||| |||||||||| |||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 1134 AAACGTTTACAGCTTCGGTTTACTATTATTCGAAATGATAAGCGGGAAACTCCCAGAATC 1193
Query 1370 CGTTAACAAACCTGACTCAGTAGATAGCTCGCTGGTTGATTTCTTAAGAGGAGAGACTCT 1429
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1194 GGTTAACAAACCTGACTCGGTAGATAGCGCGCTGGTTGATTTCTTAAGAGGAGAGACTCT 1253
Query 1430 AGCCAAAATGGTAGATCCAACACTGGAATCTTATGATGCCAAGATTGAGAATATAGGTGA 1489
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1254 AGCCAAGATGGTAGATCCAACACTGGAATCTTATGATGACAAGATTGAGAATATAGGTGA 1313
Query 1490 AGTGATCAAATCATGCCTTAGGACTGACCCGAAAGAGAGACCTACAATGCAAGAAGTCAC 1549
|||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1314 AGTGATCAAATCATGCCTCAGGACCGACCCGAAAGAGAGACCTACAATGCGGGAAGTCAC 1373
Query 1550 AGGATGGTTACGGGAGATCACGGGATTGTCACCGAACGATGCTACACCGAAATTGTCACC 1609
||||||||||||||||||||||||| | |||||||| |||||||| ||||||||||||||
Sbjct 1374 AGGATGGTTACGGGAGATCACGGGAATATCACCGAATGATGCTACGCCGAAATTGTCACC 1433
Query 1610 TCTTTGGTGGGCAGAGTTGGAGGTTTTGTCCACGGCGTAA 1649
|||||||||||||||||||||||||||||||||||| |||
Sbjct 1434 TCTTTGGTGGGCAGAGTTGGAGGTTTTGTCCACGGCTTAA 1473
> Ahg934822 jgi|Araly1|934822|scaffold_402810.1
Length=1381
Score = 1855 bits (1004), Expect = 0.0
Identities = 1243/1351 (92%), Gaps = 46/1351 (3%)
Strand=Plus/Plus
Query 332 GAAAGCTTTTGGATTTCACAGGAAAACACTTGTCCGTAACCCTTACAAAGACTTGCCTTC 391
||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct 65 GAAAGCTTTTGGATTTCACAGGAAAACACTTGTCCGTTACCCTTACAAAGATTTACCTTC 124
Query 392 AAGAAAAGACCGCAAAAACCGTGTTGTGGCTGCAACTACAACACCATCATCATCCCCAGA 451
||||||||||||||||||||||||||||||||||||| |||||||||||| || ||| |
Sbjct 125 GAGAAAAGACCGCAAAAACCGTGTTGTGGCTGCAACTATAACACCATCATCGTCACCACA 184
Query 452 ACCTGCTCCAAAACATGTTTCAACTAAAGCTTCAACAGTTTCAGAGCCACAAAAGAGATC 511
|||| |||| |||||||||||||||||| ||||||||||| | |||||||||||||||||
Sbjct 185 ACCTTCTCCTAAACATGTTTCAACTAAATCTTCAACAGTTCCGGAGCCACAAAAGAGATC 244
Query 512 ATCTACACAAGATGTTTCACCTTCTCCATCTGCGCCACTTGCAAACT-CTCCCATTCCAA 570
||||||||||||||||||||||||||| || | | |||||| ||| | || ||| |||||
Sbjct 245 ATCTACACAAGATGTTTCACCTTCTCCTTCGGTGTCACTTGTAAA-TCCTTCCACTCCAA 303
Query 571 GAAACTCTCA---TTC-T---T--CTGTTCCTTTAGTTGTTGGCTGCGTAGGCGGTGCtt 621
||||| | || ||| | | ||||||||||||| |||||||||||||||||||| |
Sbjct 304 GAAACGCACATTCTTCTTCAGTGGCTGTTCCTTTAGTAGTTGGCTGCGTAGGCGGTGCCT 363
Query 622 tttttCTTCTCCTTGTAGCTACCGGTCTCTACTTTTTCACAAGTAAGGCCGGGAAAACTG 681
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 364 TTTTTCTTCTCCTTGTAGCTACCGGTCTCTACTTTTTCACTAGTAAGGCCGGGAAAACTG 423
Query 682 TGAATCCTTGGCGTACTGGTCTTAGTGGACAACTTCAGAAAGTATTCGTTACTGGTATTC 741
||||||||||||||||||||||||||||||||| |||| | | | |||||
Sbjct 424 TGAATCCTTGGCGTACTGGTCTTAGTGGACAAC-TCAG--A--A------A---GTATT- 468
Query 742 CTGTACTCAAAAGATCTGAGATTGAAGCTGCATGTGAAGATTTTAGTAATGTCATTGGAT 801
| || | | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 469 C-GT--T------A-CT--GATTGAAGCTGCATGTGAAGATTTTAGTAATGTCATTGGAT 516
Query 802 CTTGTCCCATTGGGAAGTTGTTCAAAGGAACATTATCAAGTGGAGTGGAGATTGCTGTTG 861
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CTTGCCCCATTGGGAAATTGTTCAAAGGAACATTATCAAGTGGAGTGGAGATTGCTGTTG 576
Query 862 CTTCTTTTGCTACTA-CTACTGCCAAAGACTGGAAGGACAGTACAGAAATTCACTTCAGG 920
||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||
Sbjct 577 CTTCTTTTGCTACTACCT-CTGCCAAAGACTGGAAGGACAATACAGAAATTCACTTTAGG 635
Query 921 AAGAAGATCGAAATGTTATCGAAGATCAACCACAAGAATTTTGCAAACCTTCTTGGTTAT 980
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 636 AAGAAGATCGAAATGTTATCGAAGATCAACCACAAGAATTTTGCAAACCTTCTTGGGTAT 695
Query 981 TGTGAAGAAAAGGAACCTTTCACCAGGATCTTGATCTTTGAGTATGCTCCAAATGGATCA 1040
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 696 TGTGAAGAAAAGGAACCTTTCGCTAGGATCTTGATCTTTGAGTATGCTCCAAATGGATCA 755
Query 1041 CTCTTTGAGCATTTACA-TTATAAAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAG 1099
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 756 CTCTTTGAGCATTTACACTT-TAAAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAG 814
Query 1100 AATTGCAATGGGATTAGCATATTGCCTTGACCATATGCACCAACTCAATCCACCTATAGC 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AATTGCAATGGGATTAGCATATTGCCTTGACCATATGCACCAACTCAATCCACCTATAGC 874
Query 1160 TCACACCAATCTCGTCTCATCATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTATC 1219
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TCACACCAATCTCGTCTCGTCATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTATC 934
Query 1220 AGATTTCAGTTTCGGTTCATCTGAGACAGAGACTAACATCAACAACAACACAGTCATAGA 1279
||||||||||||||| |||||||||||||||||| ||||||| ||| || ||||||||
Sbjct 935 GGATTTCAGTTTCGGTCCATCTGAGACAGAGACTAGCATCAACGACA-CA--GTCATAGA 991
Query 1280 CACACACATCTCAGCCTTGAATCCAGAAGACAACATTTACAGCTTTGGTTTACTGTTATT 1339
|||| ||||||||| ||||||||||||||| ||| |||||||||| |||||||| |||||
Sbjct 992 CACAAACATCTCAGTCTTGAATCCAGAAGAAAACGTTTACAGCTTCGGTTTACTATTATT 1051
Query 1340 CGAAATGATAACCGGGAAACTCATAGAATCCGTTAACAAACCTGACTCAGTAGATAGCTC 1399
||||||||||| |||||||||| |||||| ||||||||||||||||| ||||||||| |
Sbjct 1052 CGAAATGATAAGCGGGAAACTCCCAGAATCGGTTAACAAACCTGACTCGGTAGATAGCGC 1111
Query 1400 GCTGGTTGATTTCTTAAGAGGAGAGACTCTAGCCAAAATGGTAGATCCAACACTGGAATC 1459
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1112 GCTGGTTGATTTCTTAAGAGGAGAGACTCTAGCCAAGATGGTAGATCCAACACTGGAATC 1171
Query 1460 TTATGATGCCAAGATTGAGAATATAGGTGAAGTGATCAAATCATGCCTTAGGACTGACCC 1519
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1172 TTATGATGACAAGATTGAGAATATAGGTGAAGTGATCAAATCATGCCTCAGGACCGACCC 1231
Query 1520 GAAAGAGAGACCTACAATGCAAGAAGTCACAGGATGGTTACGGGAGATCACGGGATTGTC 1579
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||
Sbjct 1232 GAAAGAGAGACCTACAATGCGGGAAGTCACAGGATGGTTACGGGAGATCACGGGAATATC 1291
Query 1580 ACCGAACGATGCTACACCGAAATTGTCACCTCTTTGGTGGGCAGAGTTGGAGGTTTTGTC 1639
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 ACCGAATGATGCTACGCCGAAATTGTCACCTCTTTGGTGGGCAGAGTTGGAGGTTTTGTC 1351
Query 1640 CACGGCGTAAGAGAGACCCCTTCACTAATAA 1670
|||||| |||||||| ||| ||||| |||||
Sbjct 1352 CACGGCTTAAGAGAGGCCC-TTCACCAATAA 1381
> Ahg486045 jgi|Araly1|486045|fgenesh2_kg.5__2037__AT3G56050.2
Length=1900
Score = 809 bits (438), Expect = 0.0
Identities = 886/1096 (81%), Gaps = 55/1096 (5%)
Strand=Plus/Plus
Query 589 TTCCTTTAGTTGTTGGCTGCGTAGGCGGTGCtttttttCTTCTCCTTGTAGCTACCGGTC 648
||||| |||| | ||||||||||||||||||| | ||| | |||||| ||||||| |||
Sbjct 544 TTCCTATAGTGGCTGGCTGCGTAGGCGGTGCTGTGTTTATCCTCCTTTTAGCTACTGGTG 603
Query 649 TCTACTTTTTCACAAGTAAGGCCGGGAAAA-CTGTGAATCCTTGGCGTACTGGTCTTAGT 707
||| ||||||| |||||||| | |||||| |||||||||| |||||||| |||||||||
Sbjct 604 TCTTTTTTTTCAAAAGTAAGG-CTGGAAAATCTGTGAATCCCTGGCGTACAGGTCTTAGT 662
Query 708 GGACAACTTCAGAAAGTATTCGTTACTGGTATTCCTGTACTCAAAAGATCTGAGATTGAA 767
||||||||||||||||| ||| | |||||| | || ||||||||||||||||||||||
Sbjct 663 GGACAACTTCAGAAAGTGTTCATAACTGGTGTCCCCAAACTCAAAAGATCTGAGATTGAA 722
Query 768 GCTGCATGTGAAGATTTTAGTAATGTCATTGGATCTTGTCCCATTGGGA-AGTTGTTCAA 826
||||| |||||||| || |||||||| ||||| |||||||||||||| | | ||||||||
Sbjct 723 GCTGCCTGTGAAGACTTCAGTAATGTTATTGGGTCTTGTCCCATTGGTACA-TTGTTCAA 781
Query 827 AGGAACATTATCAAGTGGAGTGGAGATTGCTGTTGCTTCTTTTGCTACT-ACTACTGCCA 885
||| || |||||||||| |||||||| ||||| |||||| |||| ||| || ||||||
Sbjct 782 AGGGACGCTATCAAGTGGGGTGGAGATAGCTGTGGCTTCTGTTGCCACTGCCT-CTGCCA 840
Query 886 AAGACTGGA-AGGACAGTACAGAAATTCACTTCAGGAAGAAGATCGAAATGTTATCGAAG 944
| || |||| | | | | |||||| || ||||| |||||||| || |||||||| |||
Sbjct 841 AGGAATGGACA-AATAACATAGAAATGCAGTTCAGAAAGAAGATTGAGATGTTATCCAAG 899
Query 945 ATCAACCACAAGAATTTTG-CAAACCTTCTTGGTTATTGTGAAGAAAAGGAACCTTTCAC 1003
|| |||||||| ||||||| | |||||||||||||| ||||||||| | || ||||||||
Sbjct 900 ATAAACCACAAAAATTTTGTC-AACCTTCTTGGTTACTGTGAAGAAGATGAGCCTTTCAC 958
Query 1004 CAGGATCTTGATCTTTGAGTATGC-TCCAAATGGATCACTCTTTGAGCATTTACATTATA 1062
||||||||| | ||||| ||||| | |||||||| || ||||||| |||||||| ||||
Sbjct 959 TAGGATCTTGGTGTTTGAATATGCAT-CAAATGGAACAGTCTTTGAACATTTACACTATA 1017
Query 1063 AAGAATCAGAACACTTGGATTGGGGAATGCGGTTAAGAATTGCAATGGG-ATTAGCATAT 1121
||||||||||||||||||| |||| ||||||| ||||||| |||||||| | |||| |||
Sbjct 1018 AAGAATCAGAACACTTGGACTGGGTAATGCGGCTAAGAATAGCAATGGGCA-TAGCTTAT 1076
Query 1122 TGCCTTGACCATATGCACCAACTCAATCCACCTATAGCT-CACACCAATC-TCGTCTCAT 1179
|||||||||||||||||| |||||| |||||| ||| | |||| ||||| || | ||||
Sbjct 1077 TGCCTTGACCATATGCACGGACTCAAGCCACCTCTAG-TCCACAGCAATCTTC-TTTCAT 1134
Query 1180 CATCTCTTCAGCTCACAGAGGATTATGCTGTCAAAGTAT-CAGATTTCAGTTTCGGTTCA 1238
|||| |||| || |||||||| || ||||||||| | | | ||||||| ||| || | |
Sbjct 1135 CATCAGTTCAACTTACAGAGGACTACGCTGTCAAAAT-TGCGGATTTCAATTTTGGAT-A 1192
Query 1239 TCT--GA-G---A-CAGAGACTA-ACATCAACAACAACACAGTCATAGACACACACATCT 1290
||| | | | | ||||| | | | || || ||| || ||||||| ||| ||||||
Sbjct 1193 TCTAAAAGGCCCATCCGAGAC-AGAAAGCAGCACCAATGCACTCATAGATACAAACATCT 1251
Query 1291 CAGCCTTGAATC-CA-GAAGACAACATTTACAGCTTTGGTTTACTGTTATTCGAAATGAT 1348
||| || | || ||||| || || ||||||| || || ||||| || ||| ||||
Sbjct 1252 CAG-AAACAA-CACAGGAAGAGAATGTTCACAGCTTCGGGTTGCTGTTGTTTGAATTGAT 1309
Query 1349 AACCGGGAAACTCATAGAATCCGTTAACAAACCTGACTCAG-TAGATAGCTC-G-CTGGT 1405
|| || |||||| ||| || ||||| ||| |||||| | |||||| | | | |||
Sbjct 1310 GACTGGAAAACTCCCAGAGTCGGTTAAAAAAGGTGACTC-GATAGATA-C-CGGATTGGC 1366
Query 1406 TGATTTCTTAAGAGGAGAGAC-TCT-AGCCAAAATGGTAGATCCAACACTGGAAT-CTTA 1462
||| ||||| |||||| |||| | | || | ||||| ||||||||| |||||| |||
Sbjct 1367 TGACTTCTTGAGAGGAAAGACAT-TAAG-GGAGATGGTGGATCCAACAGTGGAATGCTT- 1423
Query 1463 TGATGCCAAGATTGAGAATATAGGTGAAGTGATCAAAT-CATGCCTTAGGACTGACCCGA 1521
||||| ||||||||||||||||||||||||||||||| | ||| | ||| | |||||||
Sbjct 1424 TGATGACAAGATTGAGAATATAGGTGAAGTGATCAAAAGC-TGCATAAGGGCAGACCCGA 1482
Query 1522 AAGAGAGACCTACAATGCAAGAAGTCACAGG-ATGGTTACGGGAGATCACGGGATTGTCA 1580
|| ||||||| | |||| ||||||||||||| | | ||||| |||||||| ||||| |||
Sbjct 1483 AACAGAGACCGATAATGAAAGAAGTCACAGGGA-GATTACGAGAGATCACTGGATTATCA 1541
Query 1581 CC-GAACGATGCTA-CACCGAAATTGTCACCTCTTTGGTGGGCAGAGTTGGAGGTTTTGT 1638
|| || |||||||| | || ||| ||||||| || |||||||||||| |||| ||| |||
Sbjct 1542 CCAGA-CGATGCTATC-CCAAAACTGTCACCGCTCTGGTGGGCAGAGCTGGAAGTTCTGT 1599
Query 1639 CCACGGCGT-AAGAGA 1653
|||| |||| ||||||
Sbjct 1600 CCACTGCGTGAAGAGA 1615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69514697125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5