BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40280.1
Length=2075
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934830 jgi|Araly1|934830|scaffold_402818.1 2771 0.0
> Ahg934830 jgi|Araly1|934830|scaffold_402818.1
Length=1825
Score = 2771 bits (1500), Expect = 0.0
Identities = 1724/1830 (94%), Gaps = 24/1830 (1%)
Strand=Plus/Plus
Query 77 TCTCTAATGATC-TTCGTCTCCAATGGCGATATCAGTACAACACGTCGTCGTTTTACTCC 135
|||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCTCTAATGATCTTTCTTCTTCAATGGCGATATCAGTACAACACGTCGTCGTTTTACTCC 60
Query 136 TCTCCACTCTCCTCATCGCCATCACCTTCTTCCTCTTCACCTCCGATAACGCCAGATTCC 195
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 61 TCTCCACTCTCCTCATCGCCATCACCTTCTTCCTCCTCACCTCCGATAACGCCACATTCC 120
Query 196 CTTTCCCTTCTCTCTCCACC-ACCGATTACTACACACC-AA---T-----CCCAAAATCT 245
||||||||||||||||| || ||||||||||||||||| || | ||| |||||
Sbjct 121 CTTTCCCTTCTCTCTCC-CCAACCGATTACTACACACCAAACGGTCCAAACCCCAAATC- 178
Query 246 CC-AATTCCTCACCGAATCGTCGACGTTTCTTCAGATCAAACTCCACAGAAGATGAAGCT 304
|| || |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 CCTAAATCCTCACCAAAACGTCGACGTTTCTTCAGATCAAACTCCACAGAAGATGAAGCT 238
Query 305 AAACACTTCCCTCGAGGTGGGA-GAGCTGAAATGGGATCTATGTAAAGGTGCAGAATCTG 363
|||||||||| ||||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 239 TAACACTTCCCAAGAGGT-GGATGAGCTGAAATGGGATCTATGTAAAGGCGCAGAATCTG 297
Query 364 TTGATTACATACCTTGTCTTGATAATTACGCTGCCATCAAGCAGCTCAAATCAAGGAGAC 423
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 298 TTGATTACATACCTTGTCTTGATAATTACGCTGCCATTAAGCAGCTCAAATCGAGGAGAC 357
Query 424 ATATGGAGCATCGAGAACGTCATTGCCCTGAACCAAGTCCTAAATGTCTCCTTCCCTTGC 483
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 358 ATATGGAGCATCGAGAACGTCATTGCCCTGAACCAAGTCCTAAATGTCTCGTTACCTTGC 417
Query 484 CTGATAATTATAAGCCGCCGGTTCCGTGGCCTAAGAGCCGGGATATGATTTGGTATGACA 543
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CGGATAATTATAAGCCGCCGGTTCCGTGGCCTAAGAGCCGGGATATGATTTGGTATGACA 477
Query 544 ATGTTCCTCATCCCAAGCTTGTTGAATACAAGAAGGAACAAAATTGGGTTAAAAAAGAGG 603
||||||| || ||||||||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 478 ATGTTCCCCACCCCAAGCTTGTAGAATACAAGAAAGAACAAAACTGGGTTAAAAAAGAGG 537
Query 604 GTGAATTTCTAGTTTTTCCTGGAGGAGGTACTCAATTCAAATTCGGGGTTACTCATTACG 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GTGAATTTCTAGTTTTTCCTGGAGGAGGTACTCAATTCAAATTCGGGGTTACTCATTACG 597
Query 664 TTGAGTTCATCGAAAAGGCGTTACCGAGTATCAAATGGGGGAAAAACATAAGGGTTGTAT 723
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTGAGTTCATCGAAAAGGCTTTACCGAGTATCAAATGGGGGAAAAACATAAGGGTTGTAT 657
Query 724 TAGATGTTGGTTGTGGTGTTGCTAGCTTTGGCGGATCTTTATTAGATAAAGATGTCATTA 783
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 658 TAGATGTTGGTTGCGGTGTTGCTAGCTTTGGCGGGTCTTTATTAGATAAAGATGTCATTA 717
Query 784 CAATGTCGTTTGCTCCTAAAGATGAACATGAAGCTCAGATTCAATTTGCGTTAGAACGAG 843
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 718 CAATGTCGTTTGCCCCTAAAGATGAACATGAAGCTCAGATTCAATTTGCATTAGAACGAG 777
Query 844 GAATACCTGCAACACTTTCTGTTATTGGAACACAACAGCTCACGTTTCCGAGCAATGCAT 903
|||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 778 GAATACCTGCAACACTTTCTGTAATTGGAACACAACAGCTTACGTTTCCCAGCAATGCAT 837
Query 904 TTGATCTTATACATTGTGCACGGTGCAGAGTCCATTGGGATGCTGATGGTGGGAAACCGT 963
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TTGATCTTATCCATTGTGCGCGGTGCAGAGTCCATTGGGATGCTGATGGTGGGAAACCGT 897
Query 964 TGTTGGAGCTCAATAGGGTACTTAGGCCAGGAGGTTTCTTCATATGGTCTGCAACACCAG 1023
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 898 TGTTGGAGCTCAATAGGGTACTCAGGCCAGGAGGTTTCTTCATATGGTCTGCGACACCAG 957
Query 1024 TCTATCGAGATAATGACAGAGATAGCAGAATTTGGAATGAAATGGTTTCTCTTACTAAAT 1083
||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 958 TCTATCGAGATAACGACAGAGATAGCAGAATTTGGAGTGCAATGGTTTCTCTGACTAAAT 1017
Query 1084 CCATTTGCTGGAAGGTCGTGACAAAGACGGTTGATTCCTCTGGAATCGGACTTGTGATCT 1143
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CTATTTGCTGGAAGGTCGTGACAAAGACGGTTGATTCCTCTGGAATCGGACTTGTGATCT 1077
Query 1144 ATCAAAAGCCAACATCAGAATCCTGTTATAATAAACGCAGCACACAAGATCCACCACTTT 1203
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || |
Sbjct 1078 ATCAAAAGCCAACTTCAGAATCCTGTTATAATAAACGCAGCACGCAAGACCCACCTCTAT 1137
Query 1204 GTGATAAAAAGGAAGCAAATGGTTCATGGTATGTTCCTCTCGCTAAATGCCTTTCCAAGT 1263
| |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| |
Sbjct 1138 GCAATAAAAAGGAAGCAAATGCTTCATGGTATGTTCCTCTCGCCAAATGCATTTCCAAAT 1197
Query 1264 TACCTAGTGGAAATGTCCAGAGTTGGCCTGAACTATGGCCTAAACGGCTTGTGAGTGTTA 1323
|||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TACCGAGCGGAAATGTCCAGATTTGGCCTGAACTATGGCCTAAACGGCTTGTGAGTGTTA 1257
Query 1324 AACCGCAAAGCATTTCAGTTAAAGCGGAAACATTGAAGAAAGATACAGAGAAATGGTCAG 1383
|||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1258 AACCGCAAAGCATTTCGGTTGAAGCGGAAACATTGAAGAAAGATACAGAAAAATGGTCAG 1317
Query 1384 CAAGTGTTTCTGATGTTTACCTCAAACATCTAGCTGTAAACTGGTCGACTGTGCGGAATG 1443
||| ||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||
Sbjct 1318 CAATTGTATCTGATGTTTATCTCGAACATCTACCTGTAAACTGGTCGACTGTGCGGAATG 1377
Query 1444 TGATGGACATGAATGCTGGTTTTGGCGGTTTTGCTGCTGCACTTATAAATCTACCACTCT 1503
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1378 TGATGGACATGAATGCTGGTTTTGGCGGTTTTGCTGCTGCACTTATAAATCGACCTCTCT 1437
Query 1504 GGGTGATGAATGTTGTCCCTGTGGATAAACCTGACACTCTCTCCGTCGTTTATGATCGAG 1563
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1438 GGGTGATGAATGTTGTCCCTGTGGATAAACCTGACACTCTCTCAGTTGTTTATGATCGAG 1497
Query 1564 GCTTGATCGGAGTTTACCATGATTGGTGTGAGTCCGTCAACACTTACCCTAGAACATACG 1623
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1498 GCTTGATCGGAATTTACCATGATTGGTGTGAGTCCCTCAACACTTACCCTAGAACATACG 1557
Query 1624 ATCTGTTACATTCCAGTTTCCTCCTAGGTGAT-CT---C--ACACAAAGGTGTGAGATTG 1677
|| || ||||||||||||||||||| |||||| || | |||||||||||||||||||
Sbjct 1558 ATTTGCTACATTCCAGTTTCCTCCTGGGTGATACTGATCTCACACAAAGGTGTGAGATTG 1617
Query 1678 TACAAGTGGTAGCTGAGATAGATCGGATAGTGAGACCAGGTGGATATCTTGTGGTACAAG 1737
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1618 TACAAGTGGTAGCTGAGATAGATAGGATAGTGAGACCAGGCGGATATCTTGTGGTACAAG 1677
Query 1738 ACAACATGGAAACAATAATGAAGCTTGAATCCATACTTGGTTCGCTTCATTGGTCAACCA 1797
||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1678 ACACCATGGAAACAATAAAGAAGCTTGAATACATACTTGGTTCGCTTCATTGGTCAACCA 1737
Query 1798 AAATATACGAGGACCGGTTTTTGGTTGGTCGGAAGGGATTTTGGCGTCCCGCTAAACCGG 1857
|||||||| ||||||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 1738 AAATATACCAGGACCGGTTTTTTGTTGGTCAGAAGGGGTTTTGGCGTCCCGCTAAACCGG 1797
Query 1858 AGCTCAGATAGACAGAACGAGAGACATAAA 1887
| ||| ||||||||||| || | |||||||
Sbjct 1798 AACTCTGATAGACAGAAAGA-A-ACATAAA 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78046912005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5