BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40290.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483081 jgi|Araly1|483081|fgenesh2_kg.4__2141__AT2G40290.1 2076 0.0
Ahg939973 jgi|Araly1|939973|scaffold_600517.1 695 0.0
Ahg349833 jgi|Araly1|349833|fgenesh1_pg.C_scaffold_6000426 315 8e-85
> Ahg483081 jgi|Araly1|483081|fgenesh2_kg.4__2141__AT2G40290.1
Length=1392
Score = 2076 bits (1124), Expect = 0.0
Identities = 1301/1383 (94%), Gaps = 26/1383 (2%)
Strand=Plus/Plus
Query 17 CCTTGCTCATTTCTTATCTCTAG-----AAA-CCTGTCTGATTTGCTCCGTCGCCTAAAA 70
|||||||||| ||||||| |||| ||| | || |||||||||||||||||| |||
Sbjct 1 CCTTGCTCATCTCTTATCCCTAGCCAAAAAATTCAGT-TGATTTGCTCCGTCGCCT-AAA 58
Query 71 AGTCTAAAACCCTAAGTGTCTCCGCCTCGTAGCTTTACCCGATTCAACGAAGAGTGAATT 130
||||||||||||||||| |||||||| || || | || ||| ||||||||||
Sbjct 59 AGTCTAAAACCCTAAGTTTCTCCGCC-CG-AG---T---CG-----ACGTAGAGTGAATT 105
Query 131 CGCGTGAGCTCAAGCAGTATCGAAATCTACCAATCATGGCGAGTCAAACACCGAATCTCG 190
||||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 106 CGCGTGACCTTAAGCAGTATCGAAATCTTTCAATCATGGCGAGTCAAGCACCGAATCTCG 165
Query 191 AGTGTCGGATGTACGAGGCGAAATACCCAGAGGTGGATATGGCGGTGATGATCCAGGTGA 250
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 166 AGTGTCGGATGTACGAGGCGAAATACCCAGAGGTGGATATGGCGGTTATGATCCAGGTGA 225
Query 251 AGAACATTGCCGATATGGGAGCTTATGTTTCTCTCCTCGAGTACAACAACATCGAAGGCA 310
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 226 AGAACATCGCCGATATGGGAGCCTACGTTTCTCTCCTCGAGTACAACAACATCGAAGGCA 285
Query 311 TGATCCTTTTCTCCGAGCTCTCTCGTCGTCGGATCCGAAGTGTTAGCAGTTTGATTAAGG 370
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 286 TGATCCTCTTCTCCGAGCTCTCTCGTCGTCGGATCCGAAGTGTCAGCAGTTTGATTAAGG 345
Query 371 TCGGAAGAATTGAGCCTGTCATGGTTCTCCGTGTTGACAAAGAGAAAGGTTACATTGATC 430
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 346 TCGGAAGAATTGAGCCTGTCATGGTTCTCCGTGTGGACAAAGAGAAAGGTTACATTGATC 405
Query 431 TGAGCAAACGTAGAGTCAGCGAGGAAGATATTCAGACTTGTGAAGAGAGGTATAACAAGA 490
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 406 TGAGCAAACGTAGAGTCAGTGAGGAGGATATTCAGACTTGTGAAGAGAGGTATAACAAGA 465
Query 491 GCAAACTTGTTCATTCTATCATGCGCCATGTTGCTGAGACTCTTTCAATTGATTTGGAGG 550
|||| ||||| ||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 466 GCAAGCTTGTGCATTCTATCATGCGCCATGTTGCTGAGACCCTATCTATTGATTTGGAGG 525
Query 551 ACTTGTATGTGAACATTGGTTGGCCTTTGTATCGACGACATGGTCATGCTTTTGAGGCTT 610
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 526 AGTTGTATGTGAACATTGGTTGGCCTTTGTATCGAAGACATGGTCATGCTTTTGAGGCCT 585
Query 611 TCAAGATCTTAGTGACGGATCCTGATTCAGTGTTGGGTCCTCTCACCCGTGAGATCAAAG 670
|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 586 TCAAGATCTTAGTGACCGATCCTGATTCGGTGTTGGGTCCCCTCACCCGTGAGATCAAAG 645
Query 671 AAGTTGGGCCTGATGGGCAAGAGGTGACTAAGGTTGTACCTGCTGTTACGGAAGAAGTGA 730
||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AAGTTGGACCCGATGGACAAGAGGTGACTAAGGTTGTACCTGCTGTTACGGAAGAAGTGA 705
Query 731 AAGATGCACTTGTGAAGAACATTAGGAGGAGAATGACACCACAACCAATGAAAATCCGGG 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 AAGATGCACTTGTGAAGAACATTAGGAGGAGAATGACACCACAACCAATGAAAATCCGGG 765
Query 791 CTGATATCGAATTGAAGTGTTTTCAGTTTGATGGAGTTGTTCACATTAAGGAGGCTATGA 850
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 766 CTGATATCGAATTGAAGTGTTTCCAGTTTGACGGAGTTGTTCACATTAAGGAGGCCATGA 825
Query 851 AAAATGCTGAAGCCGCTGGAAATGAAGACTGTCCTGTTAAGATTAAATTGGTTGCTCCAC 910
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 826 GAAATGCTGAAGCCGCTGGAAATGAAGACTGTCCTGTTAAGATTAAGTTGGTTGCTCCAC 885
Query 911 CTCTGTATGTCCTTACTACTCAGACACTTGACAAGGAACAAGGGATTGAAATTCTAAACA 970
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 886 CTCTGTATGTCCTTACTACTCAGACACTTGACAAGGAGCAAGGGATTGAAATTCTAAACA 945
Query 971 AAGCCATAGCAGCATGCACTGAGACAATTGAGACACACAAAGGCAAGCTTGTCGTTAAGG 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 AAGCCATAGCAGCATGCACTGAGACAATTGAGACACACAAAGGCAAGCTTGTCGTTAAGG 1005
Query 1031 AGGGGGCTAGAGCTGTGAGTGAACGTGATGAAAAGATGCTGACAGAACACATGGCTAAGC 1090
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1006 AGGGAGCTAGAGCTGTGAGTGAACGTGATGATAAGATGCTGACAGAACACATGGCTAAGC 1065
Query 1091 TACGTCTTGACAATGAAGAAATGAGCGGCGATGAAGATAGCGGAGACGAAGAAGAGGACA 1150
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1066 TACGTCTTGACAATGAAGAAATTAGCGGCGATGAAGAGAGCGGAGACGAAGAAGAGGACA 1125
Query 1151 CTGGTATGGGCGAAGTGGATCTCGATGCAGGTGCCGGAATCATCGAGTAAGATTGCCGGA 1210
| || ||||| |||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1126 CAGGGATGGGAGAAGTGGATCTCGATGGTGGTGCCGGAATCATTGAGTAAGATTGCCGGA 1185
Query 1211 TTTTTCTTTCTATTAAATCTACCCAATCTCAACAGTCCCAGTATTTTGGTTTAAGCTTTG 1270
||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||
Sbjct 1186 TTTTTCTTTCTATTAAATCTACCCAGTCTCAACAGTTG-AGTATTTTGTTTTAAGCTTTG 1244
Query 1271 ACAAGGCAGTAGAAAAACCTCCGAGAGGATTTATGTGCTTTTTGATGACTCT-GAGGCAT 1329
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1245 ACAAGGCAGTAGAAAAACCTCCGAGAGGATTTATGTGTTTTTTGATGACTCTTGAGGCAT 1304
Query 1330 TTTATTTTACCCATAGGGGGTGGTTACATATCAATCATACATTCATGGTTTTATAAAAGA 1389
|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||
Sbjct 1305 TTTATTTTACCCATAGTGGGT--T-ACATATCAATCATACATTCATGGTTTTATAAAAGA 1361
Query 1390 TTT 1392
|||
Sbjct 1362 TTT 1364
> Ahg939973 jgi|Araly1|939973|scaffold_600517.1
Length=1090
Score = 695 bits (376), Expect = 0.0
Identities = 823/1039 (79%), Gaps = 29/1039 (3%)
Strand=Plus/Plus
Query 165 CATGGCGAGTCAAACACCGAATCTCGAGTGTCGGATGTACGAGGCGAAATACCCAGAGGT 224
|||||||| || |||||||||| || ||||| |||||||| | |||||||| || ||
Sbjct 20 CATGGCGAATCCCGCACCGAATCTGGAATGTCGTATGTACGAATCCAAATACCCTGATGT 79
Query 225 GGATATGGCGGTGATGATCCAGGTGAAGAACATTGCCGATATGGGAGCTTATGTTTCTCT 284
|| ||||||||||||||||||||||||||||| || || ||||||||||| || |||||
Sbjct 80 AGACATGGCGGTGATGATCCAGGTGAAGAACATCGCTGACATGGGAGCTTACGTCTCTCT 139
Query 285 CCTCGAGTACAACAACATCGAAGGCATGATCCTTTTCTCCGAGCTCTCTCGTCGTCGGAT 344
|| ||||||||| |||| ||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 140 ACTTGAGTACAACGACATTGAAGGAATGATCCTATTCTCTGAGCTCTCTCGCCGTCGGAT 199
Query 345 CCGAAGTGTTAGCAGTTTGATTAAGGTCGGAAGAATTGAGCCTGTCATGGTTCTCCGTGT 404
|| ||| | || || || || |||||||| | || |||||||| ||||| || |||||
Sbjct 200 TCGTAGTATCAGTAGCTTAATCAAGGTCGGTCGGATCGAGCCTGTAATGGTCCTTCGTGT 259
Query 405 TGACAAAGAGAAAGGTTACATTGATCTGAGCAAACGTAGAGTCAGCGAGGAAGATATTCA 464
|| | ||||| ||||||||||||||| || || ||||| || || || || || |
Sbjct 260 CGATAGAGAGAGAGGTTACATTGATCTTAGTAAGCGTAGGGTTAGTGATGAGGACAAAGG 319
Query 465 GACTTGTGAAGAGAGGTATAACAAGAGCAAACTTGTTCATTCTATCATGCGCCATGTTGC 524
| ||||||| ||||||| ||| |||||||| |||||||| ||||||||||| ||||||||
Sbjct 320 GGCTTGTGAGGAGAGGTTTAATAAGAGCAAGCTTGTTCACTCTATCATGCGTCATGTTGC 379
Query 525 TGAGACTCTTTCAATTGATTTGGAGGA-CTTGTATGTGAACATTGGTTGGCCTTTGTAT- 582
||||||| || | ||||||||||| | | || || ||||| || ||||| ||||||
Sbjct 380 TGAGACTGTTGGTGTCGATTTGGAGGAGC-TATACGTAAACATCGGCTGGCCATTGTATA 438
Query 583 CGACGACATGGTCATGCTTTTGAGGCTTTCAAGA-TCTTAGTGACGGATCCTGATTCAGT 641
|| | ||||| |||||||||||||||||||| | | || || || ||||||||||| ||
Sbjct 439 AGAAG-CATGGACATGCTTTTGAGGCTTTCAAAATTGTT-GTCACTGATCCTGATTCGGT 496
Query 642 GTTGGGTCCTCTCACCCGTG-AGATCAAAGAAGTTGGGCCTGATGG-GCAAGAGGTGACT 699
|| | |||| ||||| | || | |||||| || |||||||| | ||||||||
Sbjct 497 TTTCAATGCTCTTACCCGAGAAG-TTAAAGAAACAGGACCTGATGGTG-TGGAGGTGACC 554
Query 700 AAGGTTGTACCTGCTGT-TACGGAAGAAGTGAAAGATGCACTTGTGAAGAACATTAGGAG 758
|| ||||| || ||||| | | |||||| ||||||||||| || ||||||||||||||||
Sbjct 555 AAAGTTGTCCCGGCTGTGT-CTGAAGAATTGAAAGATGCATTTTTGAAGAACATTAGGAG 613
Query 759 GAGAATGACACCACAACCAATGAAAATCCGGGCTGATATCGAATTGAAGTGTTTTCAGTT 818
||||||||||||||| |||||||| || || |||||||| ||||||||||||||||||||
Sbjct 614 GAGAATGACACCACAGCCAATGAAGATTCGTGCTGATATTGAATTGAAGTGTTTTCAGTT 673
Query 819 TGATGGAGTTGTTCACATTAAGGAGGCTATGAAAAATGCTGAAGCCGCTGGAAATGAAGA 878
|||||||||| | ||||| ||||| || ||||| || || || || | || | ||| ||
Sbjct 674 TGATGGAGTTCTCCACATCAAGGAAGCCATGAAGAAGGCAGAGGCTGAAGGTAGTGATGA 733
Query 879 CTGTCCTGTTAAGATTAAA-TTGGTTGCTCCACCTCTGTATGTCCTTACTACTCAGACAC 937
||||| || || || || ||| |||||||||| || ||||| || || ||||| || |
Sbjct 734 TTGTCCAGTCAAAATCAAGCTTG-TTGCTCCACCACTTTATGTACTCACAACTCACACCC 792
Query 938 TTGACAAGGAACAAGGGATTGAAATTCTAAACAAAGCCATAGCAGCATGCACTGA--GAC 995
||||||||||| |||| || | | ||| || ||||| || | |||||||| | | | |
Sbjct 793 TTGACAAGGAAAAAGGAATAGTGACTCTGAATAAAGCAATTGAAGCATGCATT-ACTG-C 850
Query 996 AATTGAG-ACACACAAAGGC-AAGCTTGTCGTTAAGGAGGGGGCTAGAGCTGTGAGTGAA 1053
||| ||| | ||| ||||| || ||||| ||||| || || ||| | || ||||||||
Sbjct 851 AATAGAGGA-ACA-AAAGGGTAAACTTGTTGTTAAAGAAGGTGCTCGTGCGGTGAGTGAG 908
Query 1054 CGTGATGAAAAGAT-GCT-GACAGAACACATGGCTAAGCT-ACGTCTTGACAATGAAGAA 1110
|||||||| || || ||| | | || |||||||||||||| | | | || |||||||||
Sbjct 909 CGTGATGACAA-ATTGCTTG-CTGAGCACATGGCTAAGCTTA-GAATGGATAATGAAGAA 965
Query 1111 ATGAGCGGCGATGAAGATAGCGGAGACGAAGAAGAGGACACTGGTATGGGCGAAGTGGAT 1170
|| || || ||||| | || | ||| |||||||| |||||||| ||||| ||||| |||
Sbjct 966 ATCAGTGGTGATGAGGGGAGTGAAGATGAAGAAGAAGACACTGGAATGGGAGAAGTCGAT 1025
Query 1171 CTCGATGCAGGT-GCCGGA 1188
|||||| |||| || |||
Sbjct 1026 ATCGATGGAGGTAGCGGGA 1044
> Ahg349833 jgi|Araly1|349833|fgenesh1_pg.C_scaffold_6000426
Length=465
Score = 315 bits (170), Expect = 8e-85
Identities = 314/386 (81%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 166 ATGGCGAGTCAAACACCGAATCTCGAGTGTCGGATGTACGAGGCGAAATACCCAGAGGTG 225
||||||| || |||||||||| || ||||| |||||||| | |||||||| || ||
Sbjct 1 ATGGCGAATCCCGCACCGAATCTGGAATGTCGTATGTACGAATCCAAATACCCTGATGTA 60
Query 226 GATATGGCGGTGATGATCCAGGTGAAGAACATTGCCGATATGGGAGCTTATGTTTCTCTC 285
|| ||||||||||||||||||||||||||||| || || ||||||||||| || |||||
Sbjct 61 GACATGGCGGTGATGATCCAGGTGAAGAACATCGCTGACATGGGAGCTTACGTCTCTCTA 120
Query 286 CTCGAGTACAACAACATCGAAGGCATGATCCTTTTCTCCGAGCTCTCTCGTCGTCGGATC 345
|| ||||||||| |||| ||||| |||||||| ||||| ||||||||||| ||||||||
Sbjct 121 CTTGAGTACAACGACATTGAAGGAATGATCCTATTCTCTGAGCTCTCTCGCCGTCGGATT 180
Query 346 CGAAGTGTTAGCAGTTTGATTAAGGTCGGAAGAATTGAGCCTGTCATGGTTCTCCGTGTT 405
|| ||| | || || || || |||||||| | || |||||||| ||||| || |||||
Sbjct 181 CGTAGTATCAGTAGCTTAATCAAGGTCGGTCGGATCGAGCCTGTAATGGTCCTTCGTGTC 240
Query 406 GACAAAGAGAAAGGTTACATTGATCTGAGCAAACGTAGAGTCAGCGAGGAAGATATTCAG 465
|| | ||||| ||||||||||||||| || || ||||| || || || || || | |
Sbjct 241 GATAGAGAGAGAGGTTACATTGATCTTAGTAAGCGTAGGGTTAGTGATGAGGACAAAGGG 300
Query 466 ACTTGTGAAGAGAGGTATAACAAGAGCAAACTTGTTCATTCTATCATGCGCCATGTTGCT 525
||||||| ||||||| ||| |||||||| |||||||| ||||||||||| |||||||||
Sbjct 301 GCTTGTGAGGAGAGGTTTAATAAGAGCAAGCTTGTTCACTCTATCATGCGTCATGTTGCT 360
Query 526 GAGACTCTTTCAATTGATTTGGAGGA 551
|||||| || | |||||||||||
Sbjct 361 GAGACTGTTGGTGTCGATTTGGAGGA 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5