BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40300.1
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483083 jgi|Araly1|483083|fgenesh2_kg.4__2143__AT2G40300.1 1511 0.0
Ahg486048 jgi|Araly1|486048|fgenesh2_kg.5__2040__AT3G56090.1 492 2e-138
Ahg940425 jgi|Araly1|940425|scaffold_600969.1 110 3e-23
> Ahg483083 jgi|Araly1|483083|fgenesh2_kg.4__2143__AT2G40300.1
Length=1016
Score = 1511 bits (818), Expect = 0.0
Identities = 964/1032 (93%), Gaps = 20/1032 (2%)
Strand=Plus/Plus
Query 1 ATTCGTCTTCTCCAATTTTCTCGCGAAGAAAACTTTCCTACTTTGTTTCAATCCAAACGA 60
|||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 1 ATTCGTCTTCTCCAATTTTCTCGCGAAGAAAACTTTCCAAC-------CAATCTAAACGA 53
Query 61 GTCAAAATGCTTCTCAAGACTGTTTCTTCATCTTCTTCTTCAGCTCTCTCGCTGGTGAAT 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 54 GTCAAAATGCTTCTCAAGACTGTCTCTTCATCTTCTTCTTCAGCTCTCTCGCTGGTGAAT 113
Query 121 TTCCATGGCGTGAAGAAGGATGTGTCTCCTTTGTTACCTTCCATTTCATCGAATCTTCGA 180
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 114 TTCCACGGCGTGAAGAAGGATGTGTCTCCTTTGTTATCTTCCATTTCATCGAATCTTCGA 173
Query 181 GTTTCTTCTGGAAAATCTGGAAACTTAACTTTCTCTTTTCGCGCATCTAAAAGCTCAACC 240
||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct 174 GTTTCTTCTGGAAAACCTGGAAACTTATCTTTCTCTGTTCGCGCATCTAAGAGCTCAACC 233
Query 241 ACCGACGCGCTAAGCGGCGTTGTCTTCGAGCCGTTTAAGGAAGTAAAAAAGGAGCTCGAT 300
||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 234 ACCGATGCGCTAAGCGGCGTTGTATTCGAGCCGTTTAAGGAAGTGAAAAAGGAGCTCGAT 293
Query 301 CTCGTCCCTACCAGCTCTCATCTCTCACTCGCTCGACAAAAGTACTCAGACGAGTGCGAA 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 CTCGTCCCAACCAGCTCTCATCTCTCACTCGCTCGACAAAAGTACTCAGACGAGTGCGAA 353
Query 361 GCCGCCATTAACGAGCAGATCAATGTGGAATACAATGTCTCGTATGTGTATCACGCTATG 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 354 GCCGCCATTAACGAGCAGATCAATGTGGAATACAATGTTTCGTATGTGTATCACGCTATG 413
Query 421 TATGCTTACTTTGATCGGGATAACATCGCGCTCAAAGGTCTTGCCAAGTTCTTTAAGGAA 480
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 414 TATGCTTACTTCGATCGGGATAACATCGCGCTCAAGGGTCTTGCCAAGTTCTTTAAGGAA 473
Query 481 TCAAGTTTGGAAGAAAGAGAGCATGCTGAGAAGTTAATGGAGTATCAGAACAAACGTGGT 540
||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 474 TCAAGCGTGGAAGAAAGAGAGCATGCTGAGAAGTTAATGGAGTACCAGAATAAACGTGGT 533
Query 541 GGGAGGGTTAAGTTACAGTCCATTGTAATGCCTCTTTCAGAGTTTGAACATGTTGACAAA 600
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 534 GGCAGGGTTAAGTTACAGTCTATTGTAATGCCTCTTTCAGAGTTTGAACATGTTGACAAA 593
Query 601 GGAGATGCTCTTTATGGCATGGAGCTTGCTCTGTCACTGGAGAAACTAGTTAATGAGAAG 660
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 594 GGAGATGCTCTATATGGCATGGAGCTTGCTTTGTCACTGGAGAAACTAGTTAATGAGAAG 653
Query 661 CTCTTAAACCTTCACAGTGTTGCTTCGAAGAACAATGATGTCCACTTGGCAGATTTTATT 720
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 654 CTCTTAAACCTTCACAGTGTTGCTTCAAAGAACAATGATGTGCACTTGGCAGATTTTATT 713
Query 721 GAGAGCGAGTTTCTGACAGAGCAGGTGGAAGCAATCAAGTTGATCTCAGAATATGTGGCT 780
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 714 GAGAGCGAGTTTCTGACCGAGCAGGTGGAAGCAATCAAGATGATCTCAGAATATGTGGCT 773
Query 781 CAACTGCGACGAGTTGGCAAAGGACACGGAACATGGCATTTCAATCAGATGCTTCTGGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CAACTGCGACGAGTTGGCAAAGGACACGGAACATGGCATTTCAATCAGATGCTTCTGGAA 833
Query 841 GGGTAAGCAGCTTCGAGGGACTCTTGTGTCTACTGTGTTTCTATATGT-G-TCTACTTTA 898
|||||||||||| ||||||||||||||||||| |||||||||||||| | ||| ||| |
Sbjct 834 GGGTAAGCAGCTACGAGGGACTCTTGTGTCTAGTGTGTTTCTATATGAAGCTCT-CTT-A 891
Query 899 TGTTTA-GTTCTTTAGCTTTTACGATTTTGTGAGGTAGTAGACTTCTTTTTCTGTAAGAG 957
||||| |||||| |||||||||||||||||||||||| | ||||||||| | |
Sbjct 892 -GTTTAAGTTCTTCAGCTTTTACGATTTTGTGAGGTAG-A--CTTCTTTTTTTTTTTTTT 947
Query 958 ACAAA-AGACATGATCACATAACTTTATATTCTGGTATAAGGTTCATCAAACCCACCTGG 1016
|| ||||| | |||| |||||| |||||||| ||||||||||||| |||||||||
Sbjct 948 TGTAAGAGACAA-AG-ACATGACTTTAAATTCTGGTCTAAGGTTCATCAA-CCCACCTGG 1004
Query 1017 TGATCGATTCTA 1028
|||||||||||
Sbjct 1005 GGATCGATTCTA 1016
> Ahg486048 jgi|Araly1|486048|fgenesh2_kg.5__2040__AT3G56090.1
Length=1053
Score = 492 bits (266), Expect = 2e-138
Identities = 542/673 (81%), Gaps = 27/673 (4%)
Strand=Plus/Plus
Query 174 TCTTCGAGTTTCTTCTGGAAAAT-CTGGAAACTTAACTTTCTCTTTTCGCGCATCTAAAA 232
||| ||| ||||||||||||||| | |||| | | | ||| || |||| || || || |
Sbjct 132 TCTCCGA-TTTCTTCTGGAAAATCCGGGAATC-TCTCGTTCGCTCTTCGTGCTTCCAAGA 189
Query 233 GCTCAACCACCGACGCGCTAAGCGGCGTTGTCTTCGAGCCGTTT--AAGGAAGTAAAAAA 290
| || | | | | || | ||||||||||| |||||||| ||| || || || || ||
Sbjct 190 GTTC-A--A--G-CACGTTGAGCGGCGTTGTGTTCGAGCC-TTTCGAA-GAGGTTAAGAA 241
Query 291 GGAGCTCGATCTCGTCCCTACCAGCTC-TCATCTCTCACTCGCTCGACAAAAGTACTCAG 349
|||| | ||||| || || | | | || || || || || ||||| || ||||||
Sbjct 242 GGAGATGGATCTAGTTCC-ATCTGGTCAACAGCTTTCTCTTGCTCGTCATTTGTACTC-C 299
Query 350 AC-GAGTGCGAAGCCGCCATTAACGAGCAGATCAATGTGGAATACAATGTCTCGTATGTG 408
| ||||||||||| ||| | || |||||||||||||| ||||||||||| || |||||
Sbjct 300 CCTGAGTGCGAAGCTGCCGTCAATGAGCAGATCAATGTTGAATACAATGTGTCCTATGTC 359
Query 409 TATCACGCTATGTATGCTTACTTT-GATCGGGATAACATCGCGCTCAAAGGTCTTGCCAA 467
||||||||| ||||||| || ||| ||||| || ||| | || ||||| ||||| |||||
Sbjct 360 TATCACGCTTTGTATGCGTA-TTTCGATCGTGACAACGTTGCCCTCAAGGGTCTCGCCAA 418
Query 468 GTTCTTT-AAGGAATCAAGTTTGGAAGAAAGAGAGCATGCTGAGAAGTTAATGGAGTATC 526
||| ||| |||||||| ||| |||||||| | ||||| |||||| ||| ||||||||||
Sbjct 419 GTT-TTTCAAGGAATCCAGTGTGGAAGAACGCGAGCACGCTGAGCTGTTGATGGAGTATC 477
Query 527 AGAACAAACGTGGTGGGAGGGTTAAGTTACAGTCCATTGTAATGCCTCTTTCAGAGTTTG 586
||||||||||||||||||| || ||||||||| |||| || |||||| || |||||||
Sbjct 478 AGAACAAACGTGGTGGGAGAGTCAAGTTACAGCCCATGGTGCTGCCTCAGTCTGAGTTTG 537
Query 587 AACATGTTGACAAAGGAGATGCTCTTTATGGCATGGAGCTTG-CTCTGTCACTGGAGAAA 645
| ||| ||| |||||||||||||| |||| ||||||| ||| |||| ||| ||||||||
Sbjct 538 ATCATCCTGAGAAAGGAGATGCTCTCTATGCCATGGAG-TTGGCTCTATCATTGGAGAAA 596
Query 646 CTAGTTAATGAGAAGCTCTTAAACCTTCACAGTGTTGCTTCGAAGAACAATGATGTCCAC 705
||||| ||||| |||||| ||||||| |||||||| |||||||||||| ||||||||||
Sbjct 597 CTAGTCAATGAAAAGCTCCTAAACCTGCACAGTGTGGCTTCGAAGAACGATGATGTCCAG 656
Query 706 TTGGCAGATTTTATTGAGAGCGAGTTTCTGACA-GAGCAGGTGGAAGCAATCAAGTTGAT 764
|||||||||||||||||||| | |||||||| | || ||||||||||| || ||| ||
Sbjct 657 TTGGCAGATTTTATTGAGAGTGTGTTTCTGA-ATGAACAGGTGGAAGCGATTAAGAAAAT 715
Query 765 CTCAGAATATGTGGCTCAACTGCGACGAGTTGGCAAAGGACACGGAACATGGCATTTCAA 824
|||||||||||| ||||||| || || | ||||||||||| ||||||||||||||| |
Sbjct 716 CTCAGAATATGTTTCTCAACTTAGAAGACTCGGCAAAGGACATGGAACATGGCATTTCGA 775
Query 825 TCAG-ATGCTTCT 836
|||| | ||||||
Sbjct 776 TCAGGA-GCTTCT 787
> Ahg940425 jgi|Araly1|940425|scaffold_600969.1
Length=339
Score = 110 bits (59), Expect = 3e-23
Identities = 115/142 (81%), Gaps = 3/142 (2%)
Strand=Plus/Plus
Query 478 GAATCA-AGTTTGGAAGAAAGAGAGCATGCTGAGAAGTTAATGGAGTATCAGAACAAACG 536
||| || ||| |||||||| | ||||| |||||| ||| ||||||||||||||||||||
Sbjct 68 GAAGCAGAGTGTGGAAGAACGCGAGCACGCTGAGCTGTTGATGGAGTATCAGAACAAACG 127
Query 537 TGGTGGGAGGGTTAAGTTACAGTCCATTGTAATGCCTCTTTCAGAGTTTGAACATGTTGA 596
||||||||| || ||||||||| |||| || |||| | || |||||||| ||| |||
Sbjct 128 TGGTGGGAGAGTCAAGTTACAGCCCATGGTGCTGCCACAGTCTGAGTTTGATCATCCTGA 187
Query 597 CAAAGG-AGATGCTCTTTATGG 617
||||| | ||| ||| |||||
Sbjct 188 GAAAGGTA-ATGATCTCTATGG 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39228481593
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5