BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40310.1 Length=1215 Score E Sequences producing significant alignments: (Bits) Value Ahg895067 jgi|Araly1|895067|Al_scaffold_0006_3063 1679 0.0 Ahg901986 jgi|Araly1|901986|Al_scaffold_0004_2636 1635 0.0 Ahg913543 jgi|Araly1|913543|Al_scaffold_0001_3797 1419 0.0 Ahg901982 jgi|Araly1|901982|Al_scaffold_0004_2632 891 0.0 Ahg933893 jgi|Araly1|933893|scaffold_401881.1 248 7e-65 > Ahg895067 jgi|Araly1|895067|Al_scaffold_0006_3063 Length=1215 Score = 1679 bits (909), Expect = 0.0 Identities = 1118/1220 (92%), Gaps = 10/1220 (1%) Strand=Plus/Plus Query 1 ATGGCAAGCATTGCTTTTGTGTTTAAGGTTTTATGTGTATCTTTCTTGTTCATAT-TTGT 59 |||||||||||| |||||| |||||||| ||| ||||| ||| |||||||||| | |||| Sbjct 1 ATGGCAAGCATTACTTTTGCGTTTAAGGCTTTGTGTGTGTCTCTCTTGTTCAT-TGTTGT 59 Query 60 TGCAAGTCGTCCTACTATCCGACCAAAAACG-TTT-AACGTCCAACGTCATGGTTCTAAG 117 |||||||||||| || |||| |||| | ||| || |||||||| ||||||||||| Sbjct 60 TGCAAGTCGTCCCACCGGAAGACC-AAAA-GTTTTCAATGTCCAACGCCATGGTTCTAAA 117 Query 118 CCGGACGGAAAAACTGATAATGCCAATGTATTCACAAGTATATGGAGTCGTGCATGCAAA 177 |||||||| ||||| ||||| ||||||| ||| |||||| ||||||| |||||||||| | Sbjct 118 CCGGACGGCAAAACGGATAACGCCAATGCATTTACAAGTGTATGGAGCCGTGCATGCAGA 177 Query 178 AGAAAAAGTGGAAGTAGTAAAATCTATGTACCAAAAGGAATATTTTACCTCGGTGGTGTA 237 || |||||||||| |||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct 178 AGGGAAAGTGGAAGAAGTAAAATCTATGTACCAAAGGGAACATTCTACCTCGGTGGTGTA 237 Query 238 GAGTTTGTGGGTCCATGCAAAAATCCTATTGAATTCGTCATTGATGGAACTTTATTGGCT 297 ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 238 GAGTTCGTGGGTCCCTGCAAAAATCCTATTGAATTCGTCATCGATGGAACTTTATTGGCT 297 Query 298 CCTGCAAATCCTAGTGATATTAAGCAAGATACATGGATCAACTTTAGGTACATCAACAAT 357 ||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||| Sbjct 298 CCTGCGAATCCTAGCGACATTAAGCAAGACACATGGATCAACTTTAGGTACATCAACAAT 357 Query 358 CTTTCTATCTCCGGTTCCGGTACACTTGACGGCCAAGGAAAACAATCTTGGCCACTCAAT 417 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 358 CTCTCTATCTCCGGTTCCGGTACACTTGACGGCCAAGGGAAACAATCTTGGCCACTCAAT 417 Query 418 GACTGCCACAAAAATCTCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTG 477 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GACTGCCACAAAAATCCCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTG 477 Query 478 AACAACTCAAATATCAAAGACATAACATCACTCAACAGCAAAATGGGACATTTCAACTTC 537 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 478 AACAACTCAAATATCAAAGACATAACATCACTCAACAGCAAAATGGGACACTTCAACTTC 537 Query 538 TTCTCCGTCCATCACTTTAATATTACCGGCGTCACTATAACAGCTTCCGGTGATAGTCCT 597 |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| Sbjct 538 TTCTCCGTCCATCACTTTAATATTACTGGCGTCACTATAACAGCTCCCGGCGATAGTCCC 597 Query 598 AACACCGACGGTATCAAGATGGGTTCATGTAGCAACATGCACATCTCCAACACAAACATC 657 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || Sbjct 598 AACACCGACGGTATCAAGATGGGTTCATGTAGTAACATTCACATCTCCAACACAAATATT 657 Query 658 GGTACCGGAGACGATTGTATTGCCATTCTCTCTGGAACCACTAACCTCGATATCTCTAAT 717 |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| Sbjct 658 GGTACCGGAGACGATTGTATCGCCATTCTTTCTGGAACCACTAACCTTGATATCTCTAAC 717 Query 718 GTTAAATGTGGTCCCGGACATGGGATCAGTGTTGGAAGTTTAGGGAAGAACAAAGACGAG 777 ||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 718 GTTAAGTGTGGTCCCGGACATGGGATTAGTGTCGGAAGCTTAGGGAAGAACAAAGACGAG 777 Query 778 AAAGACGTGAAAAACTTAACAGTAAGAGACGTCATTTTCAACGGTACAAGTGATGGTATT 837 |||||||||||| ||||||| ||||||||| || | |||||||| ||||| ||||||||| Sbjct 778 AAAGACGTGAAAGACTTAACGGTAAGAGACATCGTGTTCAACGGCACAAGCGATGGTATT 837 Query 838 CGGATCAAGACTTGGGAATCTTCAGCTTCAAAAATCCTCGTTTCGAACTTTGTGTACGAG 897 ||||||||||| ||||||||||||||||| || ||||| ||||||||||| |||||||| Sbjct 838 CGGATCAAGACCTGGGAATCTTCAGCTTCGAAGATCCTTGTTTCGAACTTCATGTACGAG 897 Query 898 AATATTCAGATGATTGACGTTGGAAAACCAATCAACATCGATCAGAAGTATTGTCCTCAT 957 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 898 AATATTCAAATGATTGACGTTGGAAAGCCAATCAACATCGATCAGAAGTATTGTCCACAC 957 Query 958 CCTCCTTGTGAACATGAGCAAAAGGGAGAGTCTCACGTTCAAATCCAAGATCTTAAGTTA 1017 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 958 CCACCTTGTGAACATGAGAAAAAGGGAGAGTCTCACGTTCAAATCCAAGATCTTAAGTTA 1017 Query 1018 AAAAACATATATGGAACGTCAAAGAACAAAGTGGCAATGAATCTTCAATGTAGCAAAAGC 1077 || ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| Sbjct 1018 AAGAACATATATGGAACGTCAAAGAACAAAGTGGCAGTGAATCTGCAATGTAGCAAAAGC 1077 Query 1078 TTTCCGTGCAAGAATATTGAGCTAATTGACATTAACATAAA-AAGTAATGGACTTGAAAA 1136 ||||| ||||||||| | ||||| ||||||||||||||||| || ||||||||| ||| | Sbjct 1078 TTTCCCTGCAAGAATGTGGAGCTCATTGACATTAACATAAAGAA-TAATGGACTCGAAGA 1136 Query 1137 TAGTTCTTCCATTGCAGTTTGCGAAAATGTTGATGGTTCTATGA-GCGGTAAAATGGTTC 1195 | |||| |||| ||| || || || ||||||||||||||| | | ||||||||||||||| Sbjct 1137 TGGTTCATCCACTGCGGTGTGTGAGAATGTTGATGGTTCTGT-ACGCGGTAAAATGGTTC 1195 Query 1196 CTCAACATTGTCTGAATTGA 1215 |||||||||||||||||||| Sbjct 1196 CTCAACATTGTCTGAATTGA 1215 > Ahg901986 jgi|Araly1|901986|Al_scaffold_0004_2636 Length=1215 Score = 1635 bits (885), Expect = 0.0 Identities = 1110/1220 (91%), Gaps = 10/1220 (1%) Strand=Plus/Plus Query 1 ATGGCAAGCATTGCTTTTGTGTTTAAGGTTTTATGTGTATCTTTCTTGTTCATATTTGTT 60 ||||||||||||||||||| || ||||| ||| ||||| ||| |||||||||| ||||| Sbjct 1 ATGGCAAGCATTGCTTTTGCGTGTAAGGCTTTGTGTGTGTCTCTCTTGTTCATCGTTGTT 60 Query 61 GCAAGTCGTCCTACTATCCGACCAAAAACG-TTT-AACGTCCAACGTCATGGTTCTAAGC 118 ||||||||||| || |||| |||| | ||| || |||||||| ||||||||||| | Sbjct 61 GCAAGTCGTCCCACCGGAAGACC-AAAA-GTTTTCAATGTCCAACGCCATGGTTCTAAAC 118 Query 119 CGGACGGAAAAACTGATAATGCCAATGTATTCACAAGTATATGGAGTCGTGCATGCAAAA 178 ||||||| ||||| ||||| ||||||| ||| |||||| ||||||| |||||||||| || Sbjct 119 CGGACGGCAAAACGGATAACGCCAATGCATTTACAAGTGTATGGAGCCGTGCATGCAGAA 178 Query 179 GAAAAAGTGGAAGTAGTAAAATCTATGTACCAAAAGGAATATTTTACCTCGGTGGTGTAG 238 | |||||||||| ||||||||||||||||| || |||| ||| ||||| |||||||||| Sbjct 179 GGGAAAGTGGAAGAAGTAAAATCTATGTACCCAAGGGAACATTCTACCTTGGTGGTGTAG 238 Query 239 AGTTTGTGGGTCCATGCAAAAATCCTATTGAATTCGTCATTGATGGAACTTTATTGGCTC 298 |||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||||| Sbjct 239 AGTTCGTGGGTCCATGCAAAAATCCTATTGAATTCATCATCGATGGTACTTTATTGGCTC 298 Query 299 CTGCAAATCCTAGTGATATTAAGCAAGATACATGGATCAACTTTAGGTACATCAACAATC 358 |||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 299 CTGCGAATCCTAGCGACATTAAGCAAGACACATGGATCAACTTTAGGTACATCAACAATC 358 Query 359 TTTCTATCTCCGGTTCCGGTACACTTGACGGCCAAGGAAAACAATCTTGGCCACTCAATG 418 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 359 TCTCTATCTCCGGTTCCGGTACACTTGACGGCCAAGGGAAACAATCTTGGCCACTAAATG 418 Query 419 ACTGCCACAAAAATCTCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGA 478 ||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| Sbjct 419 ACTGCCACAAAAACCCCAGTTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGA 478 Query 479 ACAACTCAAATATCAAAGACATAACATCACTCAACAGCAAAATGGGACA-TTTCAACTTC 537 ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 479 ACAACTCAAATATCAAAGACATAACATCACTCAACAGCAAAATGGGACACTTT-AACTTC 537 Query 538 TTCTCCGTCCATCACTTTAATATTACCGGCGTCACTATAACAGCTTCCGGTGATAGTCCT 597 |||||||||||||||||||| ||||| |||||||||||| ||||| |||| |||||||| Sbjct 538 TTCTCCGTCCATCACTTTAACATTACTGGCGTCACTATAGCAGCTCCCGGCGATAGTCCC 597 Query 598 AACACCGACGGTATCAAGATGGGTTCATGTAGCAACATGCACATCTCCAACACAAACATC 657 |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 598 AACACCGACGGTATCAAGATGGGTTCATGTAGTAACATTCACATCTCCAACACAAACATT 657 Query 658 GGTACCGGAGACGATTGTATTGCCATTCTCTCTGGAACCACTAACCTCGATATCTCTAAT 717 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 658 GGTACCGGAGACGATTGTATCGCCATTCTCTCTGGAACCACTAACCTCGATATCTCTAAC 717 Query 718 GTTAAATGTGGTCCCGGACATGGGATCAGTGTTGGAAGTTTAGGGAAGAACAAAGACGAG 777 ||||| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||| Sbjct 718 GTTAAGTGTGGTCCCGGACATGGGATTAGTGTCGGAAGCTTAGGGAAGAACAAAGACGAG 777 Query 778 AAAGACGTGAAAAACTTAACAGTAAGAGACGTCATTTTCAACGGTACAAGTGATGGTATT 837 ||||||||||| ||||||| ||||||||| || | |||||||| ||||| ||||||||| Sbjct 778 AAAGACGTGAAGGACTTAACGGTAAGAGACATCGTGTTCAACGGCACAAGCGATGGTATT 837 Query 838 CGGATCAAGACTTGGGAATCTTCAGCTTCAAAAATCCTCGTTTCGAACTTTGTGTACGAG 897 |||||||||||||||||||||||||| || || ||||||||||||||||| || |||||| Sbjct 838 CGGATCAAGACTTGGGAATCTTCAGCATCGAAGATCCTCGTTTCGAACTTCGTATACGAG 897 Query 898 AATATTCAGATGATTGACGTTGGAAAACCAATCAACATCGATCAGAAGTATTGTCCTCAT 957 |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 898 AATATTCAGATGATTGACGTTGGAAAGCCAATCAACATCGATCAGAAATATTGTCCTCAC 957 Query 958 CCTCCTTGTGAACATGAGCAAAAGGGAGAGTCTCACGTTCAAATCCAAGATCTTAAGTTA 1017 || ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 958 CCACCTTGTGAACATGAGAAAAAGGGAGAGTCTCACGTTCAAATCCAAGACCTTAAGTTA 1017 Query 1018 AAAAACATATATGGAACGTCAAAGAACAAAGTGGCAATGAATCTTCAATGTAGCAAAAGC 1077 || ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| Sbjct 1018 AAGAACATATATGGAACGTCGAAGAACAAAGTGGCAGTGAATCTGCAATGTAGCAAAAGC 1077 Query 1078 TTTCCGTGCAAGAATATTGAGCTAATTGACATTAACATAAAA-AGTAATGGACTTGAAAA 1136 ||||||||||||||| | ||||||||||||||||||||||| | ||||||||| ||| Sbjct 1078 TTTCCGTGCAAGAATGTGGAGCTAATTGACATTAACATAAAGCA-TAATGGACTCGAAGC 1136 Query 1137 TAGTTCTTCCATTGCAGTTTGCGAAAATGTTGATGGTTCTATGA-GCGGTAAAATGGTTC 1195 | ||||||||| ||| || ||||| |||||||| |||||| | | ||||||||||||||| Sbjct 1137 TGGTTCTTCCACTGCTGTGTGCGAGAATGTTGACGGTTCTGT-ACGCGGTAAAATGGTTC 1195 Query 1196 CTCAACATTGTCTGAATTGA 1215 | ||||||||| |||||||| Sbjct 1196 CCCAACATTGTTTGAATTGA 1215 > Ahg913543 jgi|Araly1|913543|Al_scaffold_0001_3797 Length=1215 Score = 1419 bits (768), Expect = 0.0 Identities = 1068/1212 (88%), Gaps = 24/1212 (2%) Strand=Plus/Plus Query 9 CATTGCTTTTGTGTTTAAGGTTTTATGTGTATCTTTCTTGTTCATAT-TTGTTGCAAGTC 67 |||||||| || |||||||| ||| ||| | ||| |||||||| | | ||| |||||||| Sbjct 9 CATTGCTTCTGCGTTTAAGGCTTTGTGTTTGTCTCTCTTGTTCGT-TGTTGCTGCAAGTC 67 Query 68 GTCCT-ACTATCCGACCAAAAACG-TTT-AACGTCCAACGTCATGGTTCTAAGCCGGACG 124 || || || || |||| ||| | ||| || |||| ||| |||||||| ||||| |||| Sbjct 68 GT-CTGACCATGAGACC--AAAGGTTTTCAATGTCCGACGCCATGGTTCAAAGCCAGACG 124 Query 125 GAAAAACTGATAATGCCAATGTATTCACAAGTATATGGAGTCGTGCATGCAAAAGAAAAA 184 ||||||||||||||||||||| ||||||||| |||||| |||||||||| ||| | || Sbjct 125 GAAAAACTGATAATGCCAATGCATTCACAAGCGTATGGAAACGTGCATGCACAAGGATAA 184 Query 185 GTGGAAGTAGTAAAATCTATGTACCAAAAGGAATATTTTACCTCGGTGGTGTAGAGTTTG 244 ||||||||||||||||||| ||||| ||||||| ||| ||||| ||||| ||||| |||| Sbjct 185 GTGGAAGTAGTAAAATCTACGTACCGAAAGGAACATTCTACCTTGGTGGGGTAGAATTTG 244 Query 245 TGGGTCCATGCAAAAATCCTATTGAATTCGTCATTGATGGAACTTTATTGGCTCCTGCAA 304 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 245 TGGGTCCATGCAAAAATCCTATTGAATTTGTCATCGATGGAACTTTATTGGCTCCTGCAA 304 Query 305 ATCCTAGTGATATTAAGCAAGATACATGGATCAACTTTAGGTACATCAACAATCTTTCTA 364 | ||||| || ||||||| || |||||||||||||| | |||||||||||||| |||| Sbjct 305 ACCCTAGGGACATTAAGCTGGACACATGGATCAACTTCCGCTACATCAACAATCTCTCTA 364 Query 365 TCTCCGGTTCCGGTACACTTGACGGCCAAGGAAAACAATCTTGGCCACTCAATGACTGCC 424 | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 365 TTTCCGGTTCCGGTACACTTGACGGCCAAGGGAAACACTCTTGGCCACTCAATGACTGCC 424 Query 425 ACAAAAATC-TCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGAACAAC 483 ||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 425 ACAAAAA-CACCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTTGTGAACAAC 483 Query 484 TCAA-ATATCAAAGACATAACATCACTCAACAGCAAAATGGGACA-TTTCAACTTCTTCT 541 |||| | |||||||||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 484 TCAAGA-ATCAAAGACATAACATCACTCAACAGCAAAATGGGACACTTT-AACTTCTTCT 541 Query 542 CCGTCCATCACTTTAATATTACCGGCGTCACTATAACAGCTTCCGGTGATAGTCCTAACA 601 ||||||||||||| || ||||||||| |||||||||||||| |||||||||| || || | Sbjct 542 CCGTCCATCACTTCAACATTACCGGCATCACTATAACAGCTCCCGGTGATAGCCCCAATA 601 Query 602 CCGACGGTATCAAGATGGGTTCATGTAGCAACATGCACATCTCCAACACAAACATCGGTA 661 ||||||||||||| |||||||||||||||||||| |||||||| |||||| |||| |||| Sbjct 602 CCGACGGTATCAAAATGGGTTCATGTAGCAACATTCACATCTCGAACACACACATTGGTA 661 Query 662 CCGGAGACGATTGTATTGCCATTCTCTCTGGAACCACTAACCTCGATATCTCTAATGTTA 721 ||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| | Sbjct 662 CCGGAGACGATTGTATTGCCATTCTCTCTGGGACAACTAACCTCGATATCTCCAATGTCA 721 Query 722 AATGTGGTCCCGGACATGGGATCAGTGTTGGAAGTTTAGGGAAGAACAAAGACGAGAAAG 781 | |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| Sbjct 722 AGTGTGGTCCCGGACATGGGATCAGTGTCGGAAGCTTAGGAAAGAACAAAGACGAGAAAG 781 Query 782 ACGTGAAAAACTTAACAGTAAGAGACGTCA-TTTTCAACGGTACAAGTGATGGTATTCGG 840 | ||||| ||||||| ||||||||| || |||||||||| ||||| |||||||||||| Sbjct 782 ATGTGAAGGACTTAACGGTAAGAGACA-CAGTTTTCAACGGCACAAGCGATGGTATTCGG 840 Query 841 ATCAAGACTTGGGAATCTTCAGCTTCAAAAATCCTCGTTTCGAACTTTGTGTACGAGAAT 900 || || |||||||||||||| ||||| || ||||| ||||| ||||| || || |||||| Sbjct 841 ATAAAAACTTGGGAATCTTCGGCTTCGAAGATCCTAGTTTCTAACTTCGTATATGAGAAT 900 Query 901 ATTCAGATGATTGACGTTGGAAAACCAATCAACATCGATCAGAAGTATTGTCCTCATCCT 960 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || Sbjct 901 ATTCAGATGATTGACGTTGGAAAACCGATCAACATCGACCAGAAGTATTGTCCTCACCCA 960 Query 961 CCTTGTGAACATGAGCAAAAGGGAGAGTCTCACGTTCAAATCCAAGATC-TTAAGTTAAA 1019 |||||||||||||| |||||||| |||||||||||||| |||||||| | |||||||||| Sbjct 961 CCTTGTGAACATGAACAAAAGGGTGAGTCTCACGTTCAGATCCAAGA-CATTAAGTTAAA 1019 Query 1020 AAACATATATGGAACGTC-AAAGAACAAAGTGGCAATGAATCTTCAATGTAGCAAAAGCT 1078 || |||||||||||||| ||| |||||||||||| ||||||| ||||||||||| |||| Sbjct 1020 GAATATATATGGAACGTCGAAA-AACAAAGTGGCAGTGAATCTGCAATGTAGCAAGAGCT 1078 Query 1079 TTCCGTGCAAGAATATTGAGCTAATTGACATTAACATAAAA-AGTAATGGACTTGAAAAT 1137 |||| || |||||| |||| || |||||||||||| |||| | ||||||||| || || Sbjct 1079 TTCCATGTAAGAATGTTGAACTGATTGACATTAACCTAAAGCA-TAATGGACTCGAGGAT 1137 Query 1138 AGTTCTTCCATTGCAGTTTGCGAAAATGTTGATGGTTCTATGA-GCGGTAAAATGGTTCC 1196 || |||||| ||| |||||||| ||| || | |||||||| | | ||||| |||||||| Sbjct 1138 GGTCCTTCCACTGCGGTTTGCGAGAATATTAACGGTTCTAT-ACGTGGTAAGATGGTTCC 1196 Query 1197 TCAACATTGTCT 1208 ||| |||||||| Sbjct 1197 TCAGCATTGTCT 1208 > Ahg901982 jgi|Araly1|901982|Al_scaffold_0004_2632 Length=1101 Score = 891 bits (482), Expect = 0.0 Identities = 584/634 (92%), Gaps = 4/634 (1%) Strand=Plus/Plus Query 584 CCGGTGATAGTCCTAACACCGACGGTATCAAGATGGGTTCATGTAGCAACATGCACATCT 643 |||| |||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 470 CCGGCGATAGTCCCAACACCGACGGTATCAAGATGGGTTCATGTAGTAACATTCACATCT 529 Query 644 CCAACACAAACATCGGTACCGGAGACGATTGTATTGCCATTCTCTCTGGAACCACTAACC 703 ||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 530 CCAACACAAACATTGGTACTGGAGACGATTGTATCGCCATTCTCTCTGGAACCACTAACC 589 Query 704 TCGATATCTCTAATGTTAAATGTGGTCCCGGACATGGGATCAGTGTTGGAAGTTTAGGGA 763 ||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| | Sbjct 590 TCGATATCTCTAATGTTAAGTGTGGTCCTGGACATGGGATCAGTGTCGGAAGCTTAGGAA 649 Query 764 AGAACAAAGACGAGAAAGACGTGAAAAACTTAACAGTAAGAGACGTCATTTTCAACGGTA 823 |||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| Sbjct 650 AGAACAAAGACGAGAAAGACGTGAAAGACTTAACAGTAAGAGACGTTTTTTTTAACGGTA 709 Query 824 CAAGTGATGGTATTCGGATCAAGACTTGGGAATCTTCAGCTTCAAAAATCCTCGTTTCGA 883 | || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 710 CTAGCGATGGTATTCGGATCAAGACTTGGGAATCTTCAGCCTCAAAAATCCTCGTTTCGA 769 Query 884 ACTTTGTGTACGAGAATATTCAGATGATTGACGTTGGAAAACCAATCAACATCGATCAGA 943 |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 770 ACTTCGTATACGAGAATATTCAGATGATTGACGTTGGAAAACCAATCAACATCGATCAAA 829 Query 944 AGTATTGTCCTCATCCTCCTTGTGAACATGAGCAAAAGGGAGAGTCTCACGTTCAAATCC 1003 | ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 830 AATATTGTCCTCACCCACCTTGTGAACATGAGCAAAAGGGAGAGTCTCACGTTCAAATCC 889 Query 1004 AAGATCTTAAGTTAAAAAACATATATGGAACGTCAAAGAACAAAGTGGCAATGAATCTTC 1063 |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| | Sbjct 890 AAGACCTTAAGTTAAAGAACATATATGGAACGTCGAAGAACAAAGTGGCAATGAATCTGC 949 Query 1064 AATGTAGCAAAAGCTTTCCGTGCAAGAATATTGAGCTAATTGACATTAACATAAAA-AGT 1122 ||||||||||||| ||||||||||||||| | || || ||||||||||||||||| | | Sbjct 950 AATGTAGCAAAAGTTTTCCGTGCAAGAATGTGGAACTGATTGACATTAACATAAAGCA-T 1008 Query 1123 AATGGACTTGAAAATAGTTCTTCCATTGCAGTTTGCGAAAATGTTGATGGTTCTATGA-G 1181 |||||||| ||| | ||||||||| ||| || ||||| |||||||| |||||| | | | Sbjct 1009 AATGGACTCGAAGGTGGTTCTTCCACTGCGGTGTGCGAGAATGTTGACGGTTCTGT-ACG 1067 Query 1182 CGGTAAAATGGTTCCTCAACATTGTCTGAATTGA 1215 ||||||||||||||||||||||||||| |||||| Sbjct 1068 CGGTAAAATGGTTCCTCAACATTGTCTAAATTGA 1101 Score = 579 bits (313), Expect = 2e-164 Identities = 407/452 (90%), Gaps = 8/452 (2%) Strand=Plus/Plus Query 9 CATTGCTTTTGTGTTTAAGGTTTTATGTGTATCTTTCTTGTTCATAT-TTGTTGCAAGTC 67 ||||| ||||| |||||||| ||| ||| | ||| |||||||||| | |||||||||||| Sbjct 9 CATTGTTTTTGCGTTTAAGGCTTTGTGTTTGTCTCTCTTGTTCAT-TGTTGTTGCAAGTC 67 Query 68 G-TCCTACTATCCGACCAAAAACG-TTT-AACGTCCAACGTCATGGTTCTAAGCCGGACG 124 | ||| || || |||| |||| | ||| ||||||||||| ||||||||||| ||||||| Sbjct 68 GTTCC-ACCGTCAGACC-AAAA-GTTTTCAACGTCCAACGCCATGGTTCTAAACCGGACG 124 Query 125 GAAAAACTGATAATGCCAATGTATTCACAAGTATATGGAGTCGTGCATGCAAAAGAAAAA 184 ||||||||||||| ||||||| |||||||||| ||||||| |||||||||| ||| |||| Sbjct 125 GAAAAACTGATAACGCCAATGCATTCACAAGTGTATGGAGCCGTGCATGCAGAAGGAAAA 184 Query 185 GTGGAAGTAGTAAAATCTATGTACCAAAAGGAATATTTTACCTCGGTGGTGTAGAGTTTG 244 |||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| | Sbjct 185 GTGGAAGTAGTAAAATATATGTACCAAAAGGAACATTCTACCTCGGTGGTGTAGAGTTCG 244 Query 245 TGGGTCCATGCAAAAATCCTATTGAATTCGTCATTGATGGAACTTTATTGGCTCCTGCAA 304 |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| Sbjct 245 TGGGTCCATGCAAAAATCCTATTGAATTTATTATCGATGGAACTTTATTGGCTCCTGCAA 304 Query 305 ATCCTAGTGATATTAAGCAAGATACATGGATCAACTTTAGGTACATCAACAATCTTTCTA 364 ||||||| || ||||||||||| ||||||||||||||||||||||||||| |||| |||| Sbjct 305 ATCCTAGCGACATTAAGCAAGACACATGGATCAACTTTAGGTACATCAACGATCTCTCTA 364 Query 365 TCTCCGGTTCCGGTACACTTGACGGCCAAGGAAAACAATCTTGGCCACTCAATGACTGCC 424 |||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||| Sbjct 365 TCTCCGGTTCTGGTACACTTGACGGTCAAGGGAAACAGTCTTGGCCACTCAATGACTGCC 424 Query 425 ACAAAAATCTCAATTGTCCTAAACTAGCTATG 456 ||||||| | |||||||||||||||||||||| Sbjct 425 ACAAAAACCCCAATTGTCCTAAACTAGCTATG 456 > Ahg933893 jgi|Araly1|933893|scaffold_401881.1 Length=1260 Score = 248 bits (134), Expect = 7e-65 Identities = 551/742 (74%), Gaps = 70/742 (9%) Strand=Plus/Plus Query 247 GGTCCATGCAAAAATCCTATTGA-ATTCGTCAT-TGATGGAACTTTATTGGCTCCTGC-A 303 ||||| |||||||| |||||| | || | || || |||||||||||||||||| | Sbjct 275 GGTCCTTGCAAAAACCCTATT-ACTTTTATTATCAGA-GGAACTTTATTGGCTCCT-CGT 331 Query 304 AATCC-TAGTGATATTAAGCAAGAT-ACATGGATCAAC-TTT-AGGTACATCAACAATCT 359 ||||| || | ||| || |||||| | |||||| || ||| | |||| || | ||||| Sbjct 332 AATCCTTA-CGCTATCAAACAAGATGA-ATGGAT--ACTTTTCAAGTACGTCGATAATCT 387 Query 360 TTC---TATCT-CCGGTTCCGGTA-CACTTGACGGCCAAGGAAAACAATCTTGGCCACTC 414 | || || ||| | || | |||||||||||||||| | |||||||| ||| Sbjct 388 CACGGTTA-CTGGCGG-T--GG-ATTACTTGACGGCCAAGGATCTTATTCTTGGCCTCTC 442 Query 415 AATGACTGCCACAA-AA-ATCTCAATTGTCCTAAACTAGCTATG-ACTA-TGGGATTTGC 470 ||||| || |||| || | | |||||||| || |||||||||| || | |||| ||||| Sbjct 443 AATGATTGTAACAAGAACA-C-CAATTGTCGTACACTAGCTATGAAC-ATTGGG-TTTGC 498 Query 471 ATTCGTGAACAAC-TCAAATATCAA-AGACATAACATC-ACTCAACAGCAAAATGGGACA 527 || || || | | || || ||||| | | ||| ||| | ||||||||||||||||||| Sbjct 499 TTTTGTTAA-ATCATCGAAGATCAACGGTC-TAAGATCTA-TCAACAGCAAAATGGGACA 555 Query 528 TTTCAACTTCTTCTCCGTCCATCACTTTAATATTACCGGCGTCACTATAACAGCTTCC-G 586 ||||||||| ||||| ||| | | ||||| ||||| ||||| || || || ||| || | Sbjct 556 TTTCAACTTATTCTCGGTCGAGGATTTTAACATTACAGGCGTTACCATCACTGCT-CCTG 614 Query 587 GTGATAGTCCTAACACCGACGGTATCAAGAT-GGGTTCATGTAGCAACATGCACATCTCC 645 | ||||| ||||| |||||||| |||||||| ||| || |||| | ||| | |||| | Sbjct 615 GAGATAGCCCTAATACCGACGGAATCAAGATCGGGAA-ATCTAGCCATATGAATATCTTC 673 Query 646 AACA-CAAACATCGGTACCGGAGACGATTGTATTGCCATTCTCT--CTGGAACCA-CTAA 701 ||| || ||||| ||||| ||||||||||| || || || | | ||||||| | || Sbjct 674 AACGTCACT-ATCGGAACCGGTGACGATTGTATCGCAATCCT-TGAC-GGAACCAGC-AA 729 Query 702 CCTCGATATCTCTAATGTTAAATGTGGTCCCGGACATGGGATCAGTGTTGGAAGT-TTAG 760 | ||||||||| |||| | || || || || |||||||| ||||| || || || | Sbjct 730 TTTGGATATCTCTGATGTCAGGTGCGGACCAGGGCATGGGATTAGTGTCGGGAGCCTT-G 788 Query 761 GGAAGA-ACAAAGACGAGAAAGA-CGTGAAAAACTTAACAGTAAGAGACGTC-ATTTTCA 817 ||| || | ||||| ||||| || ||| | ||||||||| ||| || || ||| ||| Sbjct 789 GGA-GATATAAAGAGGAGAA-GAACGTCCAGGGCTTAACAGTCAGAAAC-TCGATTATCA 845 Query 818 ACGGTACAAGTGATGGTATT-CGGATCAAGACTTGGG--AATCTTCAGCT-TCAAAAATC 873 ||||||||| ||| ||| || || |||||||| |||| || | | | | || | || Sbjct 846 ACGGTACAACTGACGGT-TTACGTATCAAGACATGGGCTAAG-T-CGG-TATCGCAGATT 901 Query 874 CTCG-TTTCGAACTTTG-TGTACGAGAATATTCAGATGATTGACGTTGGAAAACCAATCA 931 ||| ||||||| ||| | |||||||| || || ||||| | |||||||| || ||| Sbjct 902 -TCGGTTTCGAA-TTTCCTCTACGAGAACATCCAAATGATCAATGTTGGAAACCCTATCG 959 Query 932 ACATCGATCAGAAGTATTGTCC 953 ||| |||||| |||||||||| Sbjct 960 TCATTGATCAGCAGTATTGTCC 981 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45366271230 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5