BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40310.1
Length=1215
Score E
Sequences producing significant alignments: (Bits) Value
Ahg895067 jgi|Araly1|895067|Al_scaffold_0006_3063 1679 0.0
Ahg901986 jgi|Araly1|901986|Al_scaffold_0004_2636 1635 0.0
Ahg913543 jgi|Araly1|913543|Al_scaffold_0001_3797 1419 0.0
Ahg901982 jgi|Araly1|901982|Al_scaffold_0004_2632 891 0.0
Ahg933893 jgi|Araly1|933893|scaffold_401881.1 248 7e-65
> Ahg895067 jgi|Araly1|895067|Al_scaffold_0006_3063
Length=1215
Score = 1679 bits (909), Expect = 0.0
Identities = 1118/1220 (92%), Gaps = 10/1220 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAGCATTGCTTTTGTGTTTAAGGTTTTATGTGTATCTTTCTTGTTCATAT-TTGT 59
|||||||||||| |||||| |||||||| ||| ||||| ||| |||||||||| | ||||
Sbjct 1 ATGGCAAGCATTACTTTTGCGTTTAAGGCTTTGTGTGTGTCTCTCTTGTTCAT-TGTTGT 59
Query 60 TGCAAGTCGTCCTACTATCCGACCAAAAACG-TTT-AACGTCCAACGTCATGGTTCTAAG 117
|||||||||||| || |||| |||| | ||| || |||||||| |||||||||||
Sbjct 60 TGCAAGTCGTCCCACCGGAAGACC-AAAA-GTTTTCAATGTCCAACGCCATGGTTCTAAA 117
Query 118 CCGGACGGAAAAACTGATAATGCCAATGTATTCACAAGTATATGGAGTCGTGCATGCAAA 177
|||||||| ||||| ||||| ||||||| ||| |||||| ||||||| |||||||||| |
Sbjct 118 CCGGACGGCAAAACGGATAACGCCAATGCATTTACAAGTGTATGGAGCCGTGCATGCAGA 177
Query 178 AGAAAAAGTGGAAGTAGTAAAATCTATGTACCAAAAGGAATATTTTACCTCGGTGGTGTA 237
|| |||||||||| |||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 178 AGGGAAAGTGGAAGAAGTAAAATCTATGTACCAAAGGGAACATTCTACCTCGGTGGTGTA 237
Query 238 GAGTTTGTGGGTCCATGCAAAAATCCTATTGAATTCGTCATTGATGGAACTTTATTGGCT 297
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 GAGTTCGTGGGTCCCTGCAAAAATCCTATTGAATTCGTCATCGATGGAACTTTATTGGCT 297
Query 298 CCTGCAAATCCTAGTGATATTAAGCAAGATACATGGATCAACTTTAGGTACATCAACAAT 357
||||| |||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 298 CCTGCGAATCCTAGCGACATTAAGCAAGACACATGGATCAACTTTAGGTACATCAACAAT 357
Query 358 CTTTCTATCTCCGGTTCCGGTACACTTGACGGCCAAGGAAAACAATCTTGGCCACTCAAT 417
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 358 CTCTCTATCTCCGGTTCCGGTACACTTGACGGCCAAGGGAAACAATCTTGGCCACTCAAT 417
Query 418 GACTGCCACAAAAATCTCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTG 477
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GACTGCCACAAAAATCCCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTG 477
Query 478 AACAACTCAAATATCAAAGACATAACATCACTCAACAGCAAAATGGGACATTTCAACTTC 537
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 478 AACAACTCAAATATCAAAGACATAACATCACTCAACAGCAAAATGGGACACTTCAACTTC 537
Query 538 TTCTCCGTCCATCACTTTAATATTACCGGCGTCACTATAACAGCTTCCGGTGATAGTCCT 597
|||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||
Sbjct 538 TTCTCCGTCCATCACTTTAATATTACTGGCGTCACTATAACAGCTCCCGGCGATAGTCCC 597
Query 598 AACACCGACGGTATCAAGATGGGTTCATGTAGCAACATGCACATCTCCAACACAAACATC 657
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 598 AACACCGACGGTATCAAGATGGGTTCATGTAGTAACATTCACATCTCCAACACAAATATT 657
Query 658 GGTACCGGAGACGATTGTATTGCCATTCTCTCTGGAACCACTAACCTCGATATCTCTAAT 717
|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||
Sbjct 658 GGTACCGGAGACGATTGTATCGCCATTCTTTCTGGAACCACTAACCTTGATATCTCTAAC 717
Query 718 GTTAAATGTGGTCCCGGACATGGGATCAGTGTTGGAAGTTTAGGGAAGAACAAAGACGAG 777
||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 718 GTTAAGTGTGGTCCCGGACATGGGATTAGTGTCGGAAGCTTAGGGAAGAACAAAGACGAG 777
Query 778 AAAGACGTGAAAAACTTAACAGTAAGAGACGTCATTTTCAACGGTACAAGTGATGGTATT 837
|||||||||||| ||||||| ||||||||| || | |||||||| ||||| |||||||||
Sbjct 778 AAAGACGTGAAAGACTTAACGGTAAGAGACATCGTGTTCAACGGCACAAGCGATGGTATT 837
Query 838 CGGATCAAGACTTGGGAATCTTCAGCTTCAAAAATCCTCGTTTCGAACTTTGTGTACGAG 897
||||||||||| ||||||||||||||||| || ||||| ||||||||||| ||||||||
Sbjct 838 CGGATCAAGACCTGGGAATCTTCAGCTTCGAAGATCCTTGTTTCGAACTTCATGTACGAG 897
Query 898 AATATTCAGATGATTGACGTTGGAAAACCAATCAACATCGATCAGAAGTATTGTCCTCAT 957
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 898 AATATTCAAATGATTGACGTTGGAAAGCCAATCAACATCGATCAGAAGTATTGTCCACAC 957
Query 958 CCTCCTTGTGAACATGAGCAAAAGGGAGAGTCTCACGTTCAAATCCAAGATCTTAAGTTA 1017
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 958 CCACCTTGTGAACATGAGAAAAAGGGAGAGTCTCACGTTCAAATCCAAGATCTTAAGTTA 1017
Query 1018 AAAAACATATATGGAACGTCAAAGAACAAAGTGGCAATGAATCTTCAATGTAGCAAAAGC 1077
|| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1018 AAGAACATATATGGAACGTCAAAGAACAAAGTGGCAGTGAATCTGCAATGTAGCAAAAGC 1077
Query 1078 TTTCCGTGCAAGAATATTGAGCTAATTGACATTAACATAAA-AAGTAATGGACTTGAAAA 1136
||||| ||||||||| | ||||| ||||||||||||||||| || ||||||||| ||| |
Sbjct 1078 TTTCCCTGCAAGAATGTGGAGCTCATTGACATTAACATAAAGAA-TAATGGACTCGAAGA 1136
Query 1137 TAGTTCTTCCATTGCAGTTTGCGAAAATGTTGATGGTTCTATGA-GCGGTAAAATGGTTC 1195
| |||| |||| ||| || || || ||||||||||||||| | | |||||||||||||||
Sbjct 1137 TGGTTCATCCACTGCGGTGTGTGAGAATGTTGATGGTTCTGT-ACGCGGTAAAATGGTTC 1195
Query 1196 CTCAACATTGTCTGAATTGA 1215
||||||||||||||||||||
Sbjct 1196 CTCAACATTGTCTGAATTGA 1215
> Ahg901986 jgi|Araly1|901986|Al_scaffold_0004_2636
Length=1215
Score = 1635 bits (885), Expect = 0.0
Identities = 1110/1220 (91%), Gaps = 10/1220 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAGCATTGCTTTTGTGTTTAAGGTTTTATGTGTATCTTTCTTGTTCATATTTGTT 60
||||||||||||||||||| || ||||| ||| ||||| ||| |||||||||| |||||
Sbjct 1 ATGGCAAGCATTGCTTTTGCGTGTAAGGCTTTGTGTGTGTCTCTCTTGTTCATCGTTGTT 60
Query 61 GCAAGTCGTCCTACTATCCGACCAAAAACG-TTT-AACGTCCAACGTCATGGTTCTAAGC 118
||||||||||| || |||| |||| | ||| || |||||||| ||||||||||| |
Sbjct 61 GCAAGTCGTCCCACCGGAAGACC-AAAA-GTTTTCAATGTCCAACGCCATGGTTCTAAAC 118
Query 119 CGGACGGAAAAACTGATAATGCCAATGTATTCACAAGTATATGGAGTCGTGCATGCAAAA 178
||||||| ||||| ||||| ||||||| ||| |||||| ||||||| |||||||||| ||
Sbjct 119 CGGACGGCAAAACGGATAACGCCAATGCATTTACAAGTGTATGGAGCCGTGCATGCAGAA 178
Query 179 GAAAAAGTGGAAGTAGTAAAATCTATGTACCAAAAGGAATATTTTACCTCGGTGGTGTAG 238
| |||||||||| ||||||||||||||||| || |||| ||| ||||| ||||||||||
Sbjct 179 GGGAAAGTGGAAGAAGTAAAATCTATGTACCCAAGGGAACATTCTACCTTGGTGGTGTAG 238
Query 239 AGTTTGTGGGTCCATGCAAAAATCCTATTGAATTCGTCATTGATGGAACTTTATTGGCTC 298
|||| |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||
Sbjct 239 AGTTCGTGGGTCCATGCAAAAATCCTATTGAATTCATCATCGATGGTACTTTATTGGCTC 298
Query 299 CTGCAAATCCTAGTGATATTAAGCAAGATACATGGATCAACTTTAGGTACATCAACAATC 358
|||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 CTGCGAATCCTAGCGACATTAAGCAAGACACATGGATCAACTTTAGGTACATCAACAATC 358
Query 359 TTTCTATCTCCGGTTCCGGTACACTTGACGGCCAAGGAAAACAATCTTGGCCACTCAATG 418
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 359 TCTCTATCTCCGGTTCCGGTACACTTGACGGCCAAGGGAAACAATCTTGGCCACTAAATG 418
Query 419 ACTGCCACAAAAATCTCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGA 478
||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct 419 ACTGCCACAAAAACCCCAGTTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGA 478
Query 479 ACAACTCAAATATCAAAGACATAACATCACTCAACAGCAAAATGGGACA-TTTCAACTTC 537
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 479 ACAACTCAAATATCAAAGACATAACATCACTCAACAGCAAAATGGGACACTTT-AACTTC 537
Query 538 TTCTCCGTCCATCACTTTAATATTACCGGCGTCACTATAACAGCTTCCGGTGATAGTCCT 597
|||||||||||||||||||| ||||| |||||||||||| ||||| |||| ||||||||
Sbjct 538 TTCTCCGTCCATCACTTTAACATTACTGGCGTCACTATAGCAGCTCCCGGCGATAGTCCC 597
Query 598 AACACCGACGGTATCAAGATGGGTTCATGTAGCAACATGCACATCTCCAACACAAACATC 657
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 598 AACACCGACGGTATCAAGATGGGTTCATGTAGTAACATTCACATCTCCAACACAAACATT 657
Query 658 GGTACCGGAGACGATTGTATTGCCATTCTCTCTGGAACCACTAACCTCGATATCTCTAAT 717
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 658 GGTACCGGAGACGATTGTATCGCCATTCTCTCTGGAACCACTAACCTCGATATCTCTAAC 717
Query 718 GTTAAATGTGGTCCCGGACATGGGATCAGTGTTGGAAGTTTAGGGAAGAACAAAGACGAG 777
||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 718 GTTAAGTGTGGTCCCGGACATGGGATTAGTGTCGGAAGCTTAGGGAAGAACAAAGACGAG 777
Query 778 AAAGACGTGAAAAACTTAACAGTAAGAGACGTCATTTTCAACGGTACAAGTGATGGTATT 837
||||||||||| ||||||| ||||||||| || | |||||||| ||||| |||||||||
Sbjct 778 AAAGACGTGAAGGACTTAACGGTAAGAGACATCGTGTTCAACGGCACAAGCGATGGTATT 837
Query 838 CGGATCAAGACTTGGGAATCTTCAGCTTCAAAAATCCTCGTTTCGAACTTTGTGTACGAG 897
|||||||||||||||||||||||||| || || ||||||||||||||||| || ||||||
Sbjct 838 CGGATCAAGACTTGGGAATCTTCAGCATCGAAGATCCTCGTTTCGAACTTCGTATACGAG 897
Query 898 AATATTCAGATGATTGACGTTGGAAAACCAATCAACATCGATCAGAAGTATTGTCCTCAT 957
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 898 AATATTCAGATGATTGACGTTGGAAAGCCAATCAACATCGATCAGAAATATTGTCCTCAC 957
Query 958 CCTCCTTGTGAACATGAGCAAAAGGGAGAGTCTCACGTTCAAATCCAAGATCTTAAGTTA 1017
|| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 958 CCACCTTGTGAACATGAGAAAAAGGGAGAGTCTCACGTTCAAATCCAAGACCTTAAGTTA 1017
Query 1018 AAAAACATATATGGAACGTCAAAGAACAAAGTGGCAATGAATCTTCAATGTAGCAAAAGC 1077
|| ||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 1018 AAGAACATATATGGAACGTCGAAGAACAAAGTGGCAGTGAATCTGCAATGTAGCAAAAGC 1077
Query 1078 TTTCCGTGCAAGAATATTGAGCTAATTGACATTAACATAAAA-AGTAATGGACTTGAAAA 1136
||||||||||||||| | ||||||||||||||||||||||| | ||||||||| |||
Sbjct 1078 TTTCCGTGCAAGAATGTGGAGCTAATTGACATTAACATAAAGCA-TAATGGACTCGAAGC 1136
Query 1137 TAGTTCTTCCATTGCAGTTTGCGAAAATGTTGATGGTTCTATGA-GCGGTAAAATGGTTC 1195
| ||||||||| ||| || ||||| |||||||| |||||| | | |||||||||||||||
Sbjct 1137 TGGTTCTTCCACTGCTGTGTGCGAGAATGTTGACGGTTCTGT-ACGCGGTAAAATGGTTC 1195
Query 1196 CTCAACATTGTCTGAATTGA 1215
| ||||||||| ||||||||
Sbjct 1196 CCCAACATTGTTTGAATTGA 1215
> Ahg913543 jgi|Araly1|913543|Al_scaffold_0001_3797
Length=1215
Score = 1419 bits (768), Expect = 0.0
Identities = 1068/1212 (88%), Gaps = 24/1212 (2%)
Strand=Plus/Plus
Query 9 CATTGCTTTTGTGTTTAAGGTTTTATGTGTATCTTTCTTGTTCATAT-TTGTTGCAAGTC 67
|||||||| || |||||||| ||| ||| | ||| |||||||| | | ||| ||||||||
Sbjct 9 CATTGCTTCTGCGTTTAAGGCTTTGTGTTTGTCTCTCTTGTTCGT-TGTTGCTGCAAGTC 67
Query 68 GTCCT-ACTATCCGACCAAAAACG-TTT-AACGTCCAACGTCATGGTTCTAAGCCGGACG 124
|| || || || |||| ||| | ||| || |||| ||| |||||||| ||||| ||||
Sbjct 68 GT-CTGACCATGAGACC--AAAGGTTTTCAATGTCCGACGCCATGGTTCAAAGCCAGACG 124
Query 125 GAAAAACTGATAATGCCAATGTATTCACAAGTATATGGAGTCGTGCATGCAAAAGAAAAA 184
||||||||||||||||||||| ||||||||| |||||| |||||||||| ||| | ||
Sbjct 125 GAAAAACTGATAATGCCAATGCATTCACAAGCGTATGGAAACGTGCATGCACAAGGATAA 184
Query 185 GTGGAAGTAGTAAAATCTATGTACCAAAAGGAATATTTTACCTCGGTGGTGTAGAGTTTG 244
||||||||||||||||||| ||||| ||||||| ||| ||||| ||||| ||||| ||||
Sbjct 185 GTGGAAGTAGTAAAATCTACGTACCGAAAGGAACATTCTACCTTGGTGGGGTAGAATTTG 244
Query 245 TGGGTCCATGCAAAAATCCTATTGAATTCGTCATTGATGGAACTTTATTGGCTCCTGCAA 304
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 245 TGGGTCCATGCAAAAATCCTATTGAATTTGTCATCGATGGAACTTTATTGGCTCCTGCAA 304
Query 305 ATCCTAGTGATATTAAGCAAGATACATGGATCAACTTTAGGTACATCAACAATCTTTCTA 364
| ||||| || ||||||| || |||||||||||||| | |||||||||||||| ||||
Sbjct 305 ACCCTAGGGACATTAAGCTGGACACATGGATCAACTTCCGCTACATCAACAATCTCTCTA 364
Query 365 TCTCCGGTTCCGGTACACTTGACGGCCAAGGAAAACAATCTTGGCCACTCAATGACTGCC 424
| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 365 TTTCCGGTTCCGGTACACTTGACGGCCAAGGGAAACACTCTTGGCCACTCAATGACTGCC 424
Query 425 ACAAAAATC-TCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTCGTGAACAAC 483
||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 425 ACAAAAA-CACCAATTGTCCTAAACTAGCTATGACTATGGGATTTGCATTTGTGAACAAC 483
Query 484 TCAA-ATATCAAAGACATAACATCACTCAACAGCAAAATGGGACA-TTTCAACTTCTTCT 541
|||| | |||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 484 TCAAGA-ATCAAAGACATAACATCACTCAACAGCAAAATGGGACACTTT-AACTTCTTCT 541
Query 542 CCGTCCATCACTTTAATATTACCGGCGTCACTATAACAGCTTCCGGTGATAGTCCTAACA 601
||||||||||||| || ||||||||| |||||||||||||| |||||||||| || || |
Sbjct 542 CCGTCCATCACTTCAACATTACCGGCATCACTATAACAGCTCCCGGTGATAGCCCCAATA 601
Query 602 CCGACGGTATCAAGATGGGTTCATGTAGCAACATGCACATCTCCAACACAAACATCGGTA 661
||||||||||||| |||||||||||||||||||| |||||||| |||||| |||| ||||
Sbjct 602 CCGACGGTATCAAAATGGGTTCATGTAGCAACATTCACATCTCGAACACACACATTGGTA 661
Query 662 CCGGAGACGATTGTATTGCCATTCTCTCTGGAACCACTAACCTCGATATCTCTAATGTTA 721
||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 662 CCGGAGACGATTGTATTGCCATTCTCTCTGGGACAACTAACCTCGATATCTCCAATGTCA 721
Query 722 AATGTGGTCCCGGACATGGGATCAGTGTTGGAAGTTTAGGGAAGAACAAAGACGAGAAAG 781
| |||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||
Sbjct 722 AGTGTGGTCCCGGACATGGGATCAGTGTCGGAAGCTTAGGAAAGAACAAAGACGAGAAAG 781
Query 782 ACGTGAAAAACTTAACAGTAAGAGACGTCA-TTTTCAACGGTACAAGTGATGGTATTCGG 840
| ||||| ||||||| ||||||||| || |||||||||| ||||| ||||||||||||
Sbjct 782 ATGTGAAGGACTTAACGGTAAGAGACA-CAGTTTTCAACGGCACAAGCGATGGTATTCGG 840
Query 841 ATCAAGACTTGGGAATCTTCAGCTTCAAAAATCCTCGTTTCGAACTTTGTGTACGAGAAT 900
|| || |||||||||||||| ||||| || ||||| ||||| ||||| || || ||||||
Sbjct 841 ATAAAAACTTGGGAATCTTCGGCTTCGAAGATCCTAGTTTCTAACTTCGTATATGAGAAT 900
Query 901 ATTCAGATGATTGACGTTGGAAAACCAATCAACATCGATCAGAAGTATTGTCCTCATCCT 960
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 901 ATTCAGATGATTGACGTTGGAAAACCGATCAACATCGACCAGAAGTATTGTCCTCACCCA 960
Query 961 CCTTGTGAACATGAGCAAAAGGGAGAGTCTCACGTTCAAATCCAAGATC-TTAAGTTAAA 1019
|||||||||||||| |||||||| |||||||||||||| |||||||| | ||||||||||
Sbjct 961 CCTTGTGAACATGAACAAAAGGGTGAGTCTCACGTTCAGATCCAAGA-CATTAAGTTAAA 1019
Query 1020 AAACATATATGGAACGTC-AAAGAACAAAGTGGCAATGAATCTTCAATGTAGCAAAAGCT 1078
|| |||||||||||||| ||| |||||||||||| ||||||| ||||||||||| ||||
Sbjct 1020 GAATATATATGGAACGTCGAAA-AACAAAGTGGCAGTGAATCTGCAATGTAGCAAGAGCT 1078
Query 1079 TTCCGTGCAAGAATATTGAGCTAATTGACATTAACATAAAA-AGTAATGGACTTGAAAAT 1137
|||| || |||||| |||| || |||||||||||| |||| | ||||||||| || ||
Sbjct 1079 TTCCATGTAAGAATGTTGAACTGATTGACATTAACCTAAAGCA-TAATGGACTCGAGGAT 1137
Query 1138 AGTTCTTCCATTGCAGTTTGCGAAAATGTTGATGGTTCTATGA-GCGGTAAAATGGTTCC 1196
|| |||||| ||| |||||||| ||| || | |||||||| | | ||||| ||||||||
Sbjct 1138 GGTCCTTCCACTGCGGTTTGCGAGAATATTAACGGTTCTAT-ACGTGGTAAGATGGTTCC 1196
Query 1197 TCAACATTGTCT 1208
||| ||||||||
Sbjct 1197 TCAGCATTGTCT 1208
> Ahg901982 jgi|Araly1|901982|Al_scaffold_0004_2632
Length=1101
Score = 891 bits (482), Expect = 0.0
Identities = 584/634 (92%), Gaps = 4/634 (1%)
Strand=Plus/Plus
Query 584 CCGGTGATAGTCCTAACACCGACGGTATCAAGATGGGTTCATGTAGCAACATGCACATCT 643
|||| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 470 CCGGCGATAGTCCCAACACCGACGGTATCAAGATGGGTTCATGTAGTAACATTCACATCT 529
Query 644 CCAACACAAACATCGGTACCGGAGACGATTGTATTGCCATTCTCTCTGGAACCACTAACC 703
||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 530 CCAACACAAACATTGGTACTGGAGACGATTGTATCGCCATTCTCTCTGGAACCACTAACC 589
Query 704 TCGATATCTCTAATGTTAAATGTGGTCCCGGACATGGGATCAGTGTTGGAAGTTTAGGGA 763
||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||| |
Sbjct 590 TCGATATCTCTAATGTTAAGTGTGGTCCTGGACATGGGATCAGTGTCGGAAGCTTAGGAA 649
Query 764 AGAACAAAGACGAGAAAGACGTGAAAAACTTAACAGTAAGAGACGTCATTTTCAACGGTA 823
|||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||
Sbjct 650 AGAACAAAGACGAGAAAGACGTGAAAGACTTAACAGTAAGAGACGTTTTTTTTAACGGTA 709
Query 824 CAAGTGATGGTATTCGGATCAAGACTTGGGAATCTTCAGCTTCAAAAATCCTCGTTTCGA 883
| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 710 CTAGCGATGGTATTCGGATCAAGACTTGGGAATCTTCAGCCTCAAAAATCCTCGTTTCGA 769
Query 884 ACTTTGTGTACGAGAATATTCAGATGATTGACGTTGGAAAACCAATCAACATCGATCAGA 943
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 770 ACTTCGTATACGAGAATATTCAGATGATTGACGTTGGAAAACCAATCAACATCGATCAAA 829
Query 944 AGTATTGTCCTCATCCTCCTTGTGAACATGAGCAAAAGGGAGAGTCTCACGTTCAAATCC 1003
| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 AATATTGTCCTCACCCACCTTGTGAACATGAGCAAAAGGGAGAGTCTCACGTTCAAATCC 889
Query 1004 AAGATCTTAAGTTAAAAAACATATATGGAACGTCAAAGAACAAAGTGGCAATGAATCTTC 1063
|||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 890 AAGACCTTAAGTTAAAGAACATATATGGAACGTCGAAGAACAAAGTGGCAATGAATCTGC 949
Query 1064 AATGTAGCAAAAGCTTTCCGTGCAAGAATATTGAGCTAATTGACATTAACATAAAA-AGT 1122
||||||||||||| ||||||||||||||| | || || ||||||||||||||||| | |
Sbjct 950 AATGTAGCAAAAGTTTTCCGTGCAAGAATGTGGAACTGATTGACATTAACATAAAGCA-T 1008
Query 1123 AATGGACTTGAAAATAGTTCTTCCATTGCAGTTTGCGAAAATGTTGATGGTTCTATGA-G 1181
|||||||| ||| | ||||||||| ||| || ||||| |||||||| |||||| | | |
Sbjct 1009 AATGGACTCGAAGGTGGTTCTTCCACTGCGGTGTGCGAGAATGTTGACGGTTCTGT-ACG 1067
Query 1182 CGGTAAAATGGTTCCTCAACATTGTCTGAATTGA 1215
||||||||||||||||||||||||||| ||||||
Sbjct 1068 CGGTAAAATGGTTCCTCAACATTGTCTAAATTGA 1101
Score = 579 bits (313), Expect = 2e-164
Identities = 407/452 (90%), Gaps = 8/452 (2%)
Strand=Plus/Plus
Query 9 CATTGCTTTTGTGTTTAAGGTTTTATGTGTATCTTTCTTGTTCATAT-TTGTTGCAAGTC 67
||||| ||||| |||||||| ||| ||| | ||| |||||||||| | ||||||||||||
Sbjct 9 CATTGTTTTTGCGTTTAAGGCTTTGTGTTTGTCTCTCTTGTTCAT-TGTTGTTGCAAGTC 67
Query 68 G-TCCTACTATCCGACCAAAAACG-TTT-AACGTCCAACGTCATGGTTCTAAGCCGGACG 124
| ||| || || |||| |||| | ||| ||||||||||| ||||||||||| |||||||
Sbjct 68 GTTCC-ACCGTCAGACC-AAAA-GTTTTCAACGTCCAACGCCATGGTTCTAAACCGGACG 124
Query 125 GAAAAACTGATAATGCCAATGTATTCACAAGTATATGGAGTCGTGCATGCAAAAGAAAAA 184
||||||||||||| ||||||| |||||||||| ||||||| |||||||||| ||| ||||
Sbjct 125 GAAAAACTGATAACGCCAATGCATTCACAAGTGTATGGAGCCGTGCATGCAGAAGGAAAA 184
Query 185 GTGGAAGTAGTAAAATCTATGTACCAAAAGGAATATTTTACCTCGGTGGTGTAGAGTTTG 244
|||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||| |
Sbjct 185 GTGGAAGTAGTAAAATATATGTACCAAAAGGAACATTCTACCTCGGTGGTGTAGAGTTCG 244
Query 245 TGGGTCCATGCAAAAATCCTATTGAATTCGTCATTGATGGAACTTTATTGGCTCCTGCAA 304
|||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 245 TGGGTCCATGCAAAAATCCTATTGAATTTATTATCGATGGAACTTTATTGGCTCCTGCAA 304
Query 305 ATCCTAGTGATATTAAGCAAGATACATGGATCAACTTTAGGTACATCAACAATCTTTCTA 364
||||||| || ||||||||||| ||||||||||||||||||||||||||| |||| ||||
Sbjct 305 ATCCTAGCGACATTAAGCAAGACACATGGATCAACTTTAGGTACATCAACGATCTCTCTA 364
Query 365 TCTCCGGTTCCGGTACACTTGACGGCCAAGGAAAACAATCTTGGCCACTCAATGACTGCC 424
|||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 365 TCTCCGGTTCTGGTACACTTGACGGTCAAGGGAAACAGTCTTGGCCACTCAATGACTGCC 424
Query 425 ACAAAAATCTCAATTGTCCTAAACTAGCTATG 456
||||||| | ||||||||||||||||||||||
Sbjct 425 ACAAAAACCCCAATTGTCCTAAACTAGCTATG 456
> Ahg933893 jgi|Araly1|933893|scaffold_401881.1
Length=1260
Score = 248 bits (134), Expect = 7e-65
Identities = 551/742 (74%), Gaps = 70/742 (9%)
Strand=Plus/Plus
Query 247 GGTCCATGCAAAAATCCTATTGA-ATTCGTCAT-TGATGGAACTTTATTGGCTCCTGC-A 303
||||| |||||||| |||||| | || | || || |||||||||||||||||| |
Sbjct 275 GGTCCTTGCAAAAACCCTATT-ACTTTTATTATCAGA-GGAACTTTATTGGCTCCT-CGT 331
Query 304 AATCC-TAGTGATATTAAGCAAGAT-ACATGGATCAAC-TTT-AGGTACATCAACAATCT 359
||||| || | ||| || |||||| | |||||| || ||| | |||| || | |||||
Sbjct 332 AATCCTTA-CGCTATCAAACAAGATGA-ATGGAT--ACTTTTCAAGTACGTCGATAATCT 387
Query 360 TTC---TATCT-CCGGTTCCGGTA-CACTTGACGGCCAAGGAAAACAATCTTGGCCACTC 414
| || || ||| | || | |||||||||||||||| | |||||||| |||
Sbjct 388 CACGGTTA-CTGGCGG-T--GG-ATTACTTGACGGCCAAGGATCTTATTCTTGGCCTCTC 442
Query 415 AATGACTGCCACAA-AA-ATCTCAATTGTCCTAAACTAGCTATG-ACTA-TGGGATTTGC 470
||||| || |||| || | | |||||||| || |||||||||| || | |||| |||||
Sbjct 443 AATGATTGTAACAAGAACA-C-CAATTGTCGTACACTAGCTATGAAC-ATTGGG-TTTGC 498
Query 471 ATTCGTGAACAAC-TCAAATATCAA-AGACATAACATC-ACTCAACAGCAAAATGGGACA 527
|| || || | | || || ||||| | | ||| ||| | |||||||||||||||||||
Sbjct 499 TTTTGTTAA-ATCATCGAAGATCAACGGTC-TAAGATCTA-TCAACAGCAAAATGGGACA 555
Query 528 TTTCAACTTCTTCTCCGTCCATCACTTTAATATTACCGGCGTCACTATAACAGCTTCC-G 586
||||||||| ||||| ||| | | ||||| ||||| ||||| || || || ||| || |
Sbjct 556 TTTCAACTTATTCTCGGTCGAGGATTTTAACATTACAGGCGTTACCATCACTGCT-CCTG 614
Query 587 GTGATAGTCCTAACACCGACGGTATCAAGAT-GGGTTCATGTAGCAACATGCACATCTCC 645
| ||||| ||||| |||||||| |||||||| ||| || |||| | ||| | |||| |
Sbjct 615 GAGATAGCCCTAATACCGACGGAATCAAGATCGGGAA-ATCTAGCCATATGAATATCTTC 673
Query 646 AACA-CAAACATCGGTACCGGAGACGATTGTATTGCCATTCTCT--CTGGAACCA-CTAA 701
||| || ||||| ||||| ||||||||||| || || || | | ||||||| | ||
Sbjct 674 AACGTCACT-ATCGGAACCGGTGACGATTGTATCGCAATCCT-TGAC-GGAACCAGC-AA 729
Query 702 CCTCGATATCTCTAATGTTAAATGTGGTCCCGGACATGGGATCAGTGTTGGAAGT-TTAG 760
| ||||||||| |||| | || || || || |||||||| ||||| || || || |
Sbjct 730 TTTGGATATCTCTGATGTCAGGTGCGGACCAGGGCATGGGATTAGTGTCGGGAGCCTT-G 788
Query 761 GGAAGA-ACAAAGACGAGAAAGA-CGTGAAAAACTTAACAGTAAGAGACGTC-ATTTTCA 817
||| || | ||||| ||||| || ||| | ||||||||| ||| || || ||| |||
Sbjct 789 GGA-GATATAAAGAGGAGAA-GAACGTCCAGGGCTTAACAGTCAGAAAC-TCGATTATCA 845
Query 818 ACGGTACAAGTGATGGTATT-CGGATCAAGACTTGGG--AATCTTCAGCT-TCAAAAATC 873
||||||||| ||| ||| || || |||||||| |||| || | | | | || | ||
Sbjct 846 ACGGTACAACTGACGGT-TTACGTATCAAGACATGGGCTAAG-T-CGG-TATCGCAGATT 901
Query 874 CTCG-TTTCGAACTTTG-TGTACGAGAATATTCAGATGATTGACGTTGGAAAACCAATCA 931
||| ||||||| ||| | |||||||| || || ||||| | |||||||| || |||
Sbjct 902 -TCGGTTTCGAA-TTTCCTCTACGAGAACATCCAAATGATCAATGTTGGAAACCCTATCG 959
Query 932 ACATCGATCAGAAGTATTGTCC 953
||| |||||| ||||||||||
Sbjct 960 TCATTGATCAGCAGTATTGTCC 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45366271230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5