BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40316.1
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934834 jgi|Araly1|934834|scaffold_402822.1 1247 0.0
> Ahg934834 jgi|Araly1|934834|scaffold_402822.1
Length=871
Score = 1247 bits (675), Expect = 0.0
Identities = 811/876 (93%), Gaps = 11/876 (1%)
Strand=Plus/Plus
Query 126 AAGCTAGGAGCTAAGGAGAAATGTCGGGGAAACTTTGGATCCCGAGATTTATTCTCATCA 185
|||||||||| || ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 2 AAGCTAGGAGGGAA-GAGAAATGTCGGGGAAACTTTGGATTCCGAGATTTCTTCTCATCA 60
Query 186 CTCTAC-TGTTTATTAGC-TCACGAGTTAACTCTCAATGTGAATTCAGTTTCACTGGACG 243
|||| | || ||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCT-CGTGCTTAGCAGCTTC-CGAGTTAACTCTCAATGTGAATTCAGTTTCACTGGACG 118
Query 244 CAACAAGGTCTTT-CATTTCAACCTAGCATCTTCGATTCGGAATTAT-CCTCACGGTGTG 301
||||||||||||| | |||||| |||| ||||||||||| |||| | |||||||||||
Sbjct 119 CAACAAGGTCTTTGC-TTTCAATTTAGCTTCTTCGATTCGAAATT-TCCCTCACGGTGTC 176
Query 302 CTCAGCGAAGATGGGTTTTATAAAGTGGAAGCGAACAGTTCCGTGTTATGGTTTCAGCTT 361
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 177 CTCAGCGAAGATGGGTTTTATAGAGTGGAAGCGAACAGTACCGTGTTATGGTTTCAGCTT 236
Query 362 TGTGACGTGCTGATTTTCAATCATGATCCCCCTCGATGTGTTGGTTGCGAAGATTGTGGA 421
||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||| |||
Sbjct 237 TGTGATGTGCTGATTTTCAATCACGATCCTCCTCGATGTGTTGGTTGTGAAGATTGCGGA 296
Query 422 GGTCCATCTCACTGCGGAACGTCATGTAGTGCACTTGTGTCAGAAAATGTAAGAGGGTAT 481
|||||||| ||||| ||||| |||||| |||||||||||||||||||||||||||| |||
Sbjct 297 GGTCCATCACACTGTGGAACATCATGTGGTGCACTTGTGTCAGAAAATGTAAGAGGTTAT 356
Query 482 GATGTATGCACTTCTCTAGGGCATGCCTCAAGCACAAAAGTTGATATTATTGATAAAGAG 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GATGTATGCACTTCTCTAGGGCATGCCTCAAGCACAAAAGTTGATATTATTGATAAAGAG 416
Query 542 GATCCTGGCAAAGGCGTCATTGTTCAGATGTCAACTGGAAATAGGAACCAAAATTGCTCG 601
|||||||||||||| ||||| ||| | ||||| ||| |||||||||||||||||||
Sbjct 417 GATCCTGGCAAAGGTGTCATCGTTAAAATGTCTGGTGGGGATAGGAACCAAAATTGCTCA 476
Query 602 CTTTCAGTTTCTGTTATTTGCCAGAAAACTAAAGTTGATGGACCACTCACTTTGGCGAAA 661
||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||
Sbjct 477 CTTTCAGTTTCTGTTATCTGCCAGAAAAATAAAGTTGATGGACCACTCACTCTGGCGAAA 536
Query 662 TCTGGTACCTGTCAGTATGCTACTCAGCTGCGACATCC-TGCCGGTTGTGCAGCAGCTAT 720
|||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 537 TCTGGTACATGTCATTATGCTACTCAGCTGCGACATCCCT-CCGGTTGTGCAGCAGCTAT 595
Query 721 ATCCGGCCATAGTAGTGGATGGGGCTGGTTTAGTACCTTACTAATCATTATCTTGTGCCT 780
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CTCTGGCCATAGCAGTGGATGGGGCTGGTTTAGTACCTTACTAATCATTATCTTGTGCCT 655
Query 781 GTTTGGAGCTTATCTGGTGGGTGGTGCAGTATATCGGTATTTCTCCCTTGGAATTCGTGG 840
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTTTGGAGCTTATCTGCTGGGTGGTGCAGTATATCGGTATTTCTCCCTTGGAATTCGTGG 715
Query 841 CATAGATGTAATCCCGAATATGGATTACTGGGCCACTGTACCTCACAGTATACAGAGCTG 900
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 716 CATAGATGTAATCCCGAACGTGGATTACTGGGCCACTGTACCTCACAGCGTACAGAGCTG 775
Query 901 TTTTGGCTCACTATTTTCAAGATTCGGGGGGTCTATTCGTGGTCAGCAAACCTCATATTC 960
|||||||||||||||||| |||||||||||||||| ||||||||| | ||||||||||||
Sbjct 776 TTTTGGCTCACTATTTTCGAGATTCGGGGGGTCTAGTCGTGGTCAACGAACCTCATATTC 835
Query 961 TCAGGTCAACTTCTGAGCAGTCTCAGCATCTTCTCT 996
|||||||||||||||||||| | |||||| ||||||
Sbjct 836 TCAGGTCAACTTCTGAGCAGACACAGCATATTCTCT 871
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55268945495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5