BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40320.1 Length=1604 Score E Sequences producing significant alignments: (Bits) Value Ahg483086 jgi|Araly1|483086|fgenesh2_kg.4__2146__AT2G40320.1 2276 0.0 > Ahg483086 jgi|Araly1|483086|fgenesh2_kg.4__2146__AT2G40320.1 Length=1552 Score = 2276 bits (1232), Expect = 0.0 Identities = 1465/1574 (93%), Gaps = 29/1574 (2%) Strand=Plus/Plus Query 1 AGTATTTCTTGAAGCAATTCCAAAATAAAGTTCTTTTGGCTTCCTCCTCCCACATTCTTA 60 |||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||| Sbjct 1 AGTAATTCTTGAAGCAATGCCAAAAT-AAGTTCTTTTGGCTTCCTCTTCCCACA-TCTTA 58 Query 61 TTTGGTTGAGGAGAATGAGATCATCAAGAACACAAAGTGTTCATTTCTTAATTTTATCTC 120 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 59 TTTGGTTGAGGAGAATGAGATCATCAAGAACCCAAAGTGTTCATTTCTTAATTTTATCTT 118 Query 121 CTCTTTTCCTAATAATATAAAA-TT------TGAAATCACATTTGTAACACTAATTCTCA 173 ||||||||||||| |||||||| || ||||||||||||||||||||| |||||| Sbjct 119 CTCTTTTCCTAATTATATAAAATTTGAACACTGAAATCACATTTGTAACACTCATTCTC- 177 Query 174 AATCCTAAACATGAAACCTTCATCACCAATTTCACTCACTAGTTCTTCAATTGCTAGAAA 233 ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 178 AATCCTAAACATGAAACCTTCATCACCAATTTCACTCGCTACTTCTTCAATTGCTAGAAA 237 Query 234 AGCTCGTTTTTCTCCTTACCTCTTCACACTCTTAGCCTTCATTCTTTTCGTCTCTGTCCT 293 | ||||| |||| ||||| ||||||||||||||||| || || || |||||||||||||| Sbjct 238 AACTCGTCTTTCACCTTATCTCTTCACACTCTTAGCTTTTATCCTCTTCGTCTCTGTCCT 297 Query 294 CTATGGTGAAGATTTTATGTGCATCTTTGGACAGCTCGAGCCTAACTTCGTCCTCCCGCC 353 ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 298 CTATGGTGAAGATTTCATGTGCATATTTGGACAGCTCGAGCCTAACTTTGTCCTCCCGCC 357 Query 354 TTCTCGAACACCCGAAAAGAATAAGAAATCGGAGAAGCTTGCGTTTGCTATTGGTAAAAC 413 |||||||||| |||| ||||| ||||| || ||||||||||||||| ||||||||||||| Sbjct 358 TTCTCGAACAACCGAGAAGAACAAGAAGTCAGAGAAGCTTGCGTTTTCTATTGGTAAAAC 417 Query 414 AGAGGAAAGCTGTGACGTTTTCAGCGGGAAATGGGTGAGAGATGAAGTCTCCCGACCACT 473 ||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 418 AGAAGAAAGTTGTGACGTTTTCAGCGGGAAGTGGGTGAGAGATGAAGTCTCCCGACCACC 477 Query 474 GTATGAGGAATGGGAGTGTCCGTACATTCAACCTCAGCTTACATGTCAAGAACACGGCCG 533 ||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 478 GTACGAAGAATGGGAGTGTCCGTACATTCAACCTCAGCTTACGTGTCAAGAACACGGCCG 537 Query 534 TCCCGACAAAGACTACCAGTTTTGGCGGTGGCAGCCTAATCACTGCGATCTTCCCTCGTT 593 |||||||||||| ||||| || ||||||||||| || ||||| ||||||||||||||||| Sbjct 538 TCCCGACAAAGATTACCAATTCTGGCGGTGGCAACCCAATCATTGCGATCTTCCCTCGTT 597 Query 594 CAACGCGTCACTGATGCTGGAGACATTAAGAGGGAAGAGGATGATGTATGTAGGAGACTC 653 ||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 598 CAACGCGTCGCTGATGCTGGAGACATTGAGAGGGAAGAGGATGATGTATGTAGGAGACTC 657 Query 654 GTTAAACCGTGGAATGTTTGTATCAATGATTTGTCTTCTTCATCGTCTTATTCCTGAAGA 713 ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 658 ATTAAACCGTGGAATGTTTGTATCGATGATTTGTCTTCTTCATCGTCTTATCCCTGAAGA 717 Query 714 TCAGAAATCAATTAAAACCAATGGTTCCCTCACTGTCTTCACTGCCAAGGAGTATAACGC 773 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 TCAGAAATCAATCAAAACCAATGGTTCCCTCACTGTCTTCACTGCCAAGGAGTATAACGC 777 Query 774 GACGATAGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGACGATGCAATTGT 833 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 GACGATAGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGACGATGCAATTGT 837 Query 834 CCATAGAATATCGGATAGGGTTGTGAGAAAAGGATCAATTAACAAACATGGTCGTCACTG 893 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 838 CCATAGAATATCGGATAGGGTTGTGAGAAAAGGATCAATTAACAAACATGGACGGCACTG 897 Query 894 GAAAGGAGTCGATATAATCATCTTCAACACTTATCTGTGGTGGATGACTGGATTGAAGAT 953 |||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||||| Sbjct 898 GAAAGGCGTCGATATAATCGTATTCAACACTTATCTATGGTGGATGACTGGATTGAAGAT 957 Query 954 GAACATCTTGCAAGGATCGTTTGATGATAAAGAGAAGAATATCGTAGAGGTTTCGACTGA 1013 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 958 GAACATCTTGCAAGGATCGTTTGCCGATAAAGAGAAGAATATCGTGGAGGTTTCGACTGA 1017 Query 1014 AGATGCGTACCGGATGGGTATGAAGAGTATGTTGAGATGGGTGAAGAACAACATGGATCG 1073 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1018 AGATGCATACCGGATGGGTATGAAGAGTATGTTGAGATGGGTGAAGAACAATATGGATCG 1077 Query 1074 TAAGAAAACTAGGGTCTTCTTCACTAGCATGTCTCCAACGCATGCCAAGGGGATAGATTG 1133 ||||||||||||||| |||||||| ||||||||||| || ||||||||||| |||||||| Sbjct 1078 TAAGAAAACTAGGGTTTTCTTCACAAGCATGTCTCCTACTCATGCCAAGGGCATAGATTG 1137 Query 1134 GGGAGGTGAACCGGGTCAGAATTGCTATAATCAGACAACACTTATAGAAGATCCAAGCTA 1193 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 1138 GGGAGGTGGACCGGGTCAGAATTGCTATAATCAGACAACACTAATAGAAGATCCGAGCTA 1197 Query 1194 CTGGGGATCAGATTGTAGGAAAAGCATAATGAAAGTGATTGGAGAAGTGTTTGGAAGATC 1253 ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1198 TTGGGGATCAGATTGTCGGAAAAGTATAATGAAAGTGATTGGAGAAGTGTTTGGAAGATC 1257 Query 1254 GAAAACACCGATAACGTTACTGAACATAACGCAAATGTCGAATTACAGGAAAGATGCACA 1313 ||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || Sbjct 1258 GAAAACACCAATAACGTTACTGAACATAACGCAGATGTCGAATTATAGGAAAGATGCTCA 1317 Query 1314 TACGTCGATATACAAGAAGCAGTGGAGTCCACTTACAGCGGAGCAGCTGGAGAATCCAAC 1373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 TACGTCGATATACAAGAAGCAGTGGAGTCCACTTACAGCGGAGCAGCTGGAGAATCCAAC 1377 Query 1374 GAGCTATGCGGATTGTGTACATTGGTGCTTGCCTGGCCTTCAAGATACTTGGAATGAGCT 1433 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1378 GAGCTATGCGGATTGTGTACACTGGTGCTTGCCTGGCCTTCAAGATACTTGGAATGAGCT 1437 Query 1434 TCTCTTTGCTAAACTTTTCTATACTTGAGATAAGAGAAAACAtttttttCCTTTGAAGAC 1493 |||||||||||||||||||||| ||||||| ||||||| ||| ||||| | | Sbjct 1438 TCTCTTTGCTAAACTTTTCTATCCTTGAGAGAAGAGAA--CATCTTTTT-----G--G-- 1486 Query 1494 GACAGCGCTTTTTGAGTTTGGAAAGAGATCTTGTGGAGAAATTGTAAAATTTAGTCATTG 1553 |||| || ||||||||||||| |||| ||||||||||||||| ||||||||| Sbjct 1487 --------TTTTAGATTTTGGAAAGAGATATTGTCGAGAAATTGTAAAATGTAGTCATTG 1538 Query 1554 AATTGATATTGTCT 1567 |||||||||||||| Sbjct 1539 AATTGATATTGTCT 1552 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60106406610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5