BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40320.1
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483086 jgi|Araly1|483086|fgenesh2_kg.4__2146__AT2G40320.1 2276 0.0
> Ahg483086 jgi|Araly1|483086|fgenesh2_kg.4__2146__AT2G40320.1
Length=1552
Score = 2276 bits (1232), Expect = 0.0
Identities = 1465/1574 (93%), Gaps = 29/1574 (2%)
Strand=Plus/Plus
Query 1 AGTATTTCTTGAAGCAATTCCAAAATAAAGTTCTTTTGGCTTCCTCCTCCCACATTCTTA 60
|||| ||||||||||||| ||||||| ||||||||||||||||||| ||||||| |||||
Sbjct 1 AGTAATTCTTGAAGCAATGCCAAAAT-AAGTTCTTTTGGCTTCCTCTTCCCACA-TCTTA 58
Query 61 TTTGGTTGAGGAGAATGAGATCATCAAGAACACAAAGTGTTCATTTCTTAATTTTATCTC 120
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 59 TTTGGTTGAGGAGAATGAGATCATCAAGAACCCAAAGTGTTCATTTCTTAATTTTATCTT 118
Query 121 CTCTTTTCCTAATAATATAAAA-TT------TGAAATCACATTTGTAACACTAATTCTCA 173
||||||||||||| |||||||| || ||||||||||||||||||||| ||||||
Sbjct 119 CTCTTTTCCTAATTATATAAAATTTGAACACTGAAATCACATTTGTAACACTCATTCTC- 177
Query 174 AATCCTAAACATGAAACCTTCATCACCAATTTCACTCACTAGTTCTTCAATTGCTAGAAA 233
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 178 AATCCTAAACATGAAACCTTCATCACCAATTTCACTCGCTACTTCTTCAATTGCTAGAAA 237
Query 234 AGCTCGTTTTTCTCCTTACCTCTTCACACTCTTAGCCTTCATTCTTTTCGTCTCTGTCCT 293
| ||||| |||| ||||| ||||||||||||||||| || || || ||||||||||||||
Sbjct 238 AACTCGTCTTTCACCTTATCTCTTCACACTCTTAGCTTTTATCCTCTTCGTCTCTGTCCT 297
Query 294 CTATGGTGAAGATTTTATGTGCATCTTTGGACAGCTCGAGCCTAACTTCGTCCTCCCGCC 353
||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 298 CTATGGTGAAGATTTCATGTGCATATTTGGACAGCTCGAGCCTAACTTTGTCCTCCCGCC 357
Query 354 TTCTCGAACACCCGAAAAGAATAAGAAATCGGAGAAGCTTGCGTTTGCTATTGGTAAAAC 413
|||||||||| |||| ||||| ||||| || ||||||||||||||| |||||||||||||
Sbjct 358 TTCTCGAACAACCGAGAAGAACAAGAAGTCAGAGAAGCTTGCGTTTTCTATTGGTAAAAC 417
Query 414 AGAGGAAAGCTGTGACGTTTTCAGCGGGAAATGGGTGAGAGATGAAGTCTCCCGACCACT 473
||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 418 AGAAGAAAGTTGTGACGTTTTCAGCGGGAAGTGGGTGAGAGATGAAGTCTCCCGACCACC 477
Query 474 GTATGAGGAATGGGAGTGTCCGTACATTCAACCTCAGCTTACATGTCAAGAACACGGCCG 533
||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 478 GTACGAAGAATGGGAGTGTCCGTACATTCAACCTCAGCTTACGTGTCAAGAACACGGCCG 537
Query 534 TCCCGACAAAGACTACCAGTTTTGGCGGTGGCAGCCTAATCACTGCGATCTTCCCTCGTT 593
|||||||||||| ||||| || ||||||||||| || ||||| |||||||||||||||||
Sbjct 538 TCCCGACAAAGATTACCAATTCTGGCGGTGGCAACCCAATCATTGCGATCTTCCCTCGTT 597
Query 594 CAACGCGTCACTGATGCTGGAGACATTAAGAGGGAAGAGGATGATGTATGTAGGAGACTC 653
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 598 CAACGCGTCGCTGATGCTGGAGACATTGAGAGGGAAGAGGATGATGTATGTAGGAGACTC 657
Query 654 GTTAAACCGTGGAATGTTTGTATCAATGATTTGTCTTCTTCATCGTCTTATTCCTGAAGA 713
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 658 ATTAAACCGTGGAATGTTTGTATCGATGATTTGTCTTCTTCATCGTCTTATCCCTGAAGA 717
Query 714 TCAGAAATCAATTAAAACCAATGGTTCCCTCACTGTCTTCACTGCCAAGGAGTATAACGC 773
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCAGAAATCAATCAAAACCAATGGTTCCCTCACTGTCTTCACTGCCAAGGAGTATAACGC 777
Query 774 GACGATAGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGACGATGCAATTGT 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 GACGATAGAGTTCTATTGGGCACCGTTTCTTCTAGAATCGAATTCAGACGATGCAATTGT 837
Query 834 CCATAGAATATCGGATAGGGTTGTGAGAAAAGGATCAATTAACAAACATGGTCGTCACTG 893
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 838 CCATAGAATATCGGATAGGGTTGTGAGAAAAGGATCAATTAACAAACATGGACGGCACTG 897
Query 894 GAAAGGAGTCGATATAATCATCTTCAACACTTATCTGTGGTGGATGACTGGATTGAAGAT 953
|||||| |||||||||||| | |||||||||||||| |||||||||||||||||||||||
Sbjct 898 GAAAGGCGTCGATATAATCGTATTCAACACTTATCTATGGTGGATGACTGGATTGAAGAT 957
Query 954 GAACATCTTGCAAGGATCGTTTGATGATAAAGAGAAGAATATCGTAGAGGTTTCGACTGA 1013
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 958 GAACATCTTGCAAGGATCGTTTGCCGATAAAGAGAAGAATATCGTGGAGGTTTCGACTGA 1017
Query 1014 AGATGCGTACCGGATGGGTATGAAGAGTATGTTGAGATGGGTGAAGAACAACATGGATCG 1073
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1018 AGATGCATACCGGATGGGTATGAAGAGTATGTTGAGATGGGTGAAGAACAATATGGATCG 1077
Query 1074 TAAGAAAACTAGGGTCTTCTTCACTAGCATGTCTCCAACGCATGCCAAGGGGATAGATTG 1133
||||||||||||||| |||||||| ||||||||||| || ||||||||||| ||||||||
Sbjct 1078 TAAGAAAACTAGGGTTTTCTTCACAAGCATGTCTCCTACTCATGCCAAGGGCATAGATTG 1137
Query 1134 GGGAGGTGAACCGGGTCAGAATTGCTATAATCAGACAACACTTATAGAAGATCCAAGCTA 1193
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1138 GGGAGGTGGACCGGGTCAGAATTGCTATAATCAGACAACACTAATAGAAGATCCGAGCTA 1197
Query 1194 CTGGGGATCAGATTGTAGGAAAAGCATAATGAAAGTGATTGGAGAAGTGTTTGGAAGATC 1253
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1198 TTGGGGATCAGATTGTCGGAAAAGTATAATGAAAGTGATTGGAGAAGTGTTTGGAAGATC 1257
Query 1254 GAAAACACCGATAACGTTACTGAACATAACGCAAATGTCGAATTACAGGAAAGATGCACA 1313
||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 1258 GAAAACACCAATAACGTTACTGAACATAACGCAGATGTCGAATTATAGGAAAGATGCTCA 1317
Query 1314 TACGTCGATATACAAGAAGCAGTGGAGTCCACTTACAGCGGAGCAGCTGGAGAATCCAAC 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TACGTCGATATACAAGAAGCAGTGGAGTCCACTTACAGCGGAGCAGCTGGAGAATCCAAC 1377
Query 1374 GAGCTATGCGGATTGTGTACATTGGTGCTTGCCTGGCCTTCAAGATACTTGGAATGAGCT 1433
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GAGCTATGCGGATTGTGTACACTGGTGCTTGCCTGGCCTTCAAGATACTTGGAATGAGCT 1437
Query 1434 TCTCTTTGCTAAACTTTTCTATACTTGAGATAAGAGAAAACAtttttttCCTTTGAAGAC 1493
|||||||||||||||||||||| ||||||| ||||||| ||| ||||| | |
Sbjct 1438 TCTCTTTGCTAAACTTTTCTATCCTTGAGAGAAGAGAA--CATCTTTTT-----G--G-- 1486
Query 1494 GACAGCGCTTTTTGAGTTTGGAAAGAGATCTTGTGGAGAAATTGTAAAATTTAGTCATTG 1553
|||| || ||||||||||||| |||| ||||||||||||||| |||||||||
Sbjct 1487 --------TTTTAGATTTTGGAAAGAGATATTGTCGAGAAATTGTAAAATGTAGTCATTG 1538
Query 1554 AATTGATATTGTCT 1567
||||||||||||||
Sbjct 1539 AATTGATATTGTCT 1552
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60106406610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5