BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40330.1
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483087 jgi|Araly1|483087|fgenesh2_kg.4__2147__AT2G40330.1 1531 0.0
> Ahg483087 jgi|Araly1|483087|fgenesh2_kg.4__2147__AT2G40330.1
Length=1059
Score = 1531 bits (829), Expect = 0.0
Identities = 973/1040 (94%), Gaps = 20/1040 (2%)
Strand=Plus/Plus
Query 3 TACATGTAAATATCTCTCA-T--T---A-A-TACAACCTCACGAAGAAAACCATTTGTTT 54
||||||||||||||||||| | | | | |||||||||||||||||| ||||||||||
Sbjct 1 TACATGTAAATATCTCTCATTAATACAACATTACAACCTCACGAAGAAACCCATTTGTTT 60
Query 55 TCTTAGAGAGAGCCAAGAATATTAAAAGAGATATAGAGAAAAGATTTGCTTTAATAATGC 114
|||||||||||||||||||||||||| ||||||| || |||||| ||||||||| |||||
Sbjct 61 TCTTAGAGAGAGCCAAGAATATTAAAGGAGATATCGAAAAAAGACTTGCTTTAAAAATGC 120
Query 115 CAACGTCGATACAGTTTCAGAGATCCTCCACCGCCGCAGAAGCAGCCAACGCCACCGTAA 174
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 CATCGTCGATACAGTTTCAGAGATCCTCCACCGCCGCAGAAGCAGCCAACCCCACCGTAA 180
Query 175 GAAACTATCCCCACCACCATC-AGAAACAGGTTCAAAAAGTGAGCCTCACGCGCGGGATG 233
||||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 181 GAAACTATCACCACCACCA-CAACAAACAGGTTCAAAAAGTGAGCCTCACGCGCGGGATG 239
Query 234 GCTGATGTGCCGGAGCACGTGGAGCTTTCCCACACGCACGTGGTTGGTCCTTCTCAGTGC 293
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 240 GCTGATGTACCGGAGCACGTGGAGCTTTCTCACACGCACGTGGTTGGTCCTTCTCAGTGC 299
Query 294 TTCTCCGTCGTGGTACAAGACGTGGAGGCTCCGGTTTCCACAGTCTGGTCGATCCTAAGC 353
|||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 300 TTCTCCGTCGTGGTGCAAGACGTGGAGGCTCCGGCTTCCGCCGTCTGGTCGATCCTAAGC 359
Query 354 CGCTTCGAACACCCTCAAGCGTACAAACACTTCGTGAAAAGCTGCCACGTGGTTATCGGA 413
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 360 CGCTTCGAACACCCTCAAGCGTACAAACACTTCGTGAAAAGCTGCCACGTGGCTATCGGA 419
Query 414 GACGGTCGAGAGGTTGGGTCGGTGAGAGAGGTCAGAGTCGTCTCTGGTCTCCCCGCGGCG 473
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 420 GACGGTCGAGAGATTGGGTCGGTGAGGGAGGTCCGAGTCGTCTCTGGTCTCCCTGCGGCG 479
Query 474 TTTAGCTTAGAGCGGCTTGAGATCATGGACGATGATCGCCACGTCATCAGTTTCAGCGTC 533
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 480 TTTAGCTTAGAGCGGCTTGAGATCATGGATGATGAACGCCACGTCATCAGTTTCAGCGTC 539
Query 534 GTTGGTGGGGACCACAGACTCATGAACTACAAGTCGGTGACGACGGTGCATGAGTCGGAG 593
|| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 540 GTGGGTGGGGACCACAGACTTATGAACTACAAGTCGGTAACGACGGTGCATGAGTCGGAG 599
Query 594 -GAGGACTCCGACGGCAAGAAGAGGACACGTGTCGTTGAGTCATACGTCGTTGACGTACC 652
| | |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 600 TCA-TCCGACGACGGTAAGAAGAGGACACGTGTCGTCGAGTCATACGTCGTTGACGTACC 658
Query 653 GGCGGGTAACGATAAGGAAGAGACTTGTAGCTTTGCTGATACTATAGTACGGTGCAACTT 712
||||||||||||||||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 659 GGCGGGTAACGATAAGGAAGAGACTTGTAGCTTCGCGGATACCATTGTACGGTGCAACTT 718
Query 713 GCAATCGCTGGCTAAACTCGCCGAGAACACTTCTAAATTCTCGTAATTACa-ttttttca 771
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 719 GCAATCGCTGGCTAAACTCGCCGAGAACACGTCTAAATTCTCGTAATTACATTTTTTTCA 778
Query 772 atctttttatttttattttattttctatatttctctctttcaaaatttatcttttatttt 831
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 ATCTTTTTATTTTTATTATATTTTCTAT-TTTCTCTCTTTCAAAATTTATCTTTTATTTT 837
Query 832 tGGGATTCTCGAGGTGGTTTTGGATTTTAAGATTTAAGTATTTAACTATCG-TCG--GG- 887
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 838 TGGGATTCTCGAGGTGGTTTTGGATTTTAAGATTTAAGTATTTAACAATCAATCGTAGGC 897
Query 888 GATTTTTCGAAACTAAAACAAAAAACAAGAATTATATCAAACAAGATGGTTTTGGTTTTT 947
|||||| ||||||||||| |||||| || ||||| | ||||||||||||||||||||||
Sbjct 898 GATTTT-CGAAACTAAAAAAAAAAAAAAAAATTAGAA-AAACAAGATGGTTTTGGTTTTT 955
Query 948 CGAAGTTAGGGTTTTTAGGGTCTGTTAAATGTATGTCTCAACGATACTTTGGTTTTACCC 1007
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 956 CGAAGTTAGGGTTTTTAGGGTCTGTTAAATGTATGTCTCAACGATACTTTGGGTTTACCC 1015
Query 1008 TTAAAACCATTTCTTCTTGT 1027
||||||||||||||||||||
Sbjct 1016 TTAAAACCATTTCTTCTTGT 1035
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39876571182
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5