BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40360.1
Length=2560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483090 jgi|Araly1|483090|fgenesh2_kg.4__2150__AT2G40360.1 3541 0.0
Ahg906059 jgi|Araly1|906059|Al_scaffold_0003_3187 1317 0.0
Ahg349526 jgi|Araly1|349526|fgenesh1_pg.C_scaffold_6000119 935 0.0
> Ahg483090 jgi|Araly1|483090|fgenesh2_kg.4__2150__AT2G40360.1
Length=2313
Score = 3541 bits (1917), Expect = 0.0
Identities = 2185/2315 (94%), Gaps = 16/2315 (1%)
Strand=Plus/Plus
Query 19 TTTCTTCTCAGGCCAAAACTCGCCTCTGGAAGCTCCGATGACGAAGAGGAGCAAAGGAGC 78
||||||||||| |||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 1 TTTCTTCTCAGACCAAAACTCGCCTCTGAAAGCTCCGATGACGAAGAAGAAAAAAGGAGC 60
Query 79 TAACGAAGATAAGCTGATAGAAACCAAAAGCAAAAACGTTTCTGGAAAATCTCAGAAACA 138
||||||||||||| | || |||||||| ||||||| ||||||||| ||||||||||||||
Sbjct 61 TAACGAAGATAAGATTATTGAAACCAAGAGCAAAACCGTTTCTGGGAAATCTCAGAAACA 120
Query 139 GAAGAAACCAGTAG--A-AGCAGAAAGCTTAAAAGAGGAAGACCTTCTACAAGCATCCGG 195
|||||||||||||| | || ||||||||| |||||||| ||||||||||||| ||| ||
Sbjct 121 GAAGAAACCAGTAGAAATAGAAGAAAGCTTGAAAGAGGAGGACCTTCTACAAGAATCTGG 180
Query 196 AACTGATTCTGATTACGACGGAGATAGTTTGCCTGGTTCTTTGAATTCCGACGATTTCGA 255
||||||||||||||||||||| |||||||||||||| |||||| ||||||| ||||||||
Sbjct 181 AACTGATTCTGATTACGACGGCGATAGTTTGCCTGGGTCTTTGGATTCCGATGATTTCGA 240
Query 256 CTCCGATTTTTCCGATTCAGAGGATGATGGAACACATGAAGGAACAGAAGATGGAGATGT 315
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 241 CTCCGATTTTTTCGATTCAGAGGATGATGGAACACAGGAAGGAACAGAAGATGGAGATGT 300
Query 316 AGAATTTTCCGATGACGACG-AC---G-----TGCTTGAGCATGATGGGTCAATTGATAA 366
|||||||||||| ||||||| | | ||||||||||||| ||||||||||||||
Sbjct 301 AGAATTTTCCGAGGACGACGTGCTTGGTAATTTGCTTGAGCATGAGGGGTCAATTGATAA 360
Query 367 CGAGGATGATGATGGAAGTGAACATGTAGGTAGTGACAATAATGAGGAACATGGGAGTGA 426
|| |||||||| | ||||||||| |||| |||||||| ||||||| ||||||||||
Sbjct 361 TGAAGATGATGAAGAAAGTGAACAAGTAGAAAGTGACAACGGTGAGGAAGATGGGAGTGA 420
Query 427 TGAAGATTCTGAGCGAGGTGAAGCGGTTGAAGAGAGCGATTCCTCAGAAGATGAGGTTCC 486
||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 TGAAGGTTCTGAGCGAGATGAAGCGGTTGAAGAGAGCGATTCATCAGAAGATGAGGTTCC 480
Query 487 ATCTAGAAATACAGTTGGGAATGTTCCCTTAAAGTGGTATGAAGATGAGAAACATATTGG 546
|||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||
Sbjct 481 TTCTAGAAATACAGTTGGGGATGTTCCATTGGAGTGGTATAAAGATGAGAAACATATTGG 540
Query 547 TTATGACCTCACTGGG-AAGAAGATTACTAAGAAAGAAAAACAAGATAAACTCGACTCTT 605
||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTATGACATCAC-GGGAAAGAAGATTACTAAGAAAGAAAAACAAGATAAACTCGACTCTT 599
Query 606 TTCTTGCAACTATAGATGACTCTAAGACTTGGCGCAAAATTTATGATGAATATAATGACG 665
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 TTCTTGCAACTATGGATGACTCTAAGAATTGGCGCAAAATTTATGATGAATATAATGACG 659
Query 666 AGGACGTTGAGCTGACTAAAGAGGAGAGCAAGATCGTTCAG-AGAATACTCAAAGGGGAA 724
|||| || |||||||||||||||||| |||| || | | | ||||||||||||||||||
Sbjct 660 AGGAAGTAGAGCTGACTAAAGAGGAGTGCAACCTCATGC-GTAGAATACTCAAAGGGGAA 718
Query 725 GCTCCACATGCGGACTTTGATCCATATGCACCTTATGTTGAGTGGTTCAAACATGATGAT 784
||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||
Sbjct 719 GCTCCACATGCTGACTTTGATCCATATGCGCCTTATGTTGATTGGTTCAAATGGGATGAT 778
Query 785 GCAATACATCCACTCTCAAGTGCACCAGAGCCCAAGCGAAGATTCATCCCTTCAAAATGG 844
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 779 TCAATACATCCACTCTCAAGTGCGCCAGAGCCCAAGCGAAGATTCATCCCTTCAAAATGG 838
Query 845 GAGGCCAAAAAGGTTGTTAAGATTGTTAGAGCAATACGTAAGGGGTGGATCAAGTTTGAT 904
||||||||||||||| ||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 839 GAGGCCAAAAAGGTTCTTAAGCTTGTTAGAGCAATCCGGAAGGGGTGGATCAAGTTTGAT 898
Query 905 AAGCCTGAAGAAGAGCCCAATGTATACCTTTTATGGGGTGATGATTCGACATCTGATCAA 964
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 899 AAGCCTGAAGAAGAGCCCAATGTATACCTCTTATGGGGTGACGATTCGACGTCTGATCAA 958
Query 965 AAGAGCAAGCATTTAACTTATATTCCTCCACCCAAGCTTAAATTGCCAGGACACGATGAA 1024
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 959 AAGAGCAAGCATTTAACATATATTCCTCCACCCAAGCTGAAATTGCCAGGACACGATGAA 1018
Query 1025 TCATACAATCCTTCTTTGGAATATATTCCAACAGAGGAGGAGAAAGCCTCATATGAGTTG 1084
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1019 TCATACAATCCTTCTTTGGAATATATTCCAACAGAGGAGGAGAAAGCCTCATATGAATTG 1078
Query 1085 ATGTTTGAGGAAGATCGTCCAAAATTCATTCCTACAAGGTTTACATCTTTGAGAAGCATC 1144
|||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1079 ATGTATGAGGAAGATCGTCCAAAATTCATTCCTAAAAGGTTTACATCTCTGAGAAGCATC 1138
Query 1145 CCTGCGTATGAGAATGCACTGAAGGAGTCTTTTGAGCGTTGTTTGGATCTATACCTATGT 1204
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CCAGCGTATGAGAATGCACTGAAGGAGTCTTTTGAGCGTTGTTTGGATCTATACCTATGT 1198
Query 1205 CCAAGAGTTCGAAAGAAGAGAATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCT 1264
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1199 CCGAGAGTTCGAAAGAAGAGGATAAACATCGACCCTGAATCTTTGAAGCCTAAGCTACCT 1258
Query 1265 AGTAGGAAGGATCTTAGACCTTATCCTAACTCCTGTTATCTTGAATATAAAGGCCATACA 1324
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1259 AGTAGGAAGGATCTTAGACCTTATCCTAATTCCTGTTATCTTGAATATAAAGGACATACA 1318
Query 1325 GGGGCTGTTACTTCAATATCCACTGATAGTTCTGGCGAGTGGATAGCCTCAGGTTCAACT 1384
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GGGGCTGTTACTACCATATCCACTGATAGTTCTGGCGAGTGGATAGCCTCAGGTTCAACT 1378
Query 1385 GATGGATCTGTCCGTATGTGGGAAGTGGAGACTGGTAGATGCCTTAAGGTCTGGCAGTTT 1444
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1379 GATGGATCTGTTCGTATGTGGGAAGTGGAAACTGGTAGATGTCTTAAGGTCTGGCAGTTT 1438
Query 1445 GACGAAGCTATCATGTGTGTGGCTTGGAATCCTCTTTCCAGGCTTCCAGTTTTAGCCGTT 1504
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 GATGAAGCTATTATGTGTGTGGCTTGGAATCCTCTTTCCAGGCTTCCAGTTTTAGCCGTT 1498
Query 1505 GCCATGGGACGAGATTTGTTTTTTCTGAACACTGAACTTGGGACTGATGAGGAACAGGAA 1564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GCCATGGGACGAGATTTGTTTTTTCTGAACACTGAACTTGGGACTGATGAGGAACAGGAA 1558
Query 1565 ATTACTAAAGAGAGGCTTCACTCAGGAAACATCCCAGAACCAGACGCATCTGTTGCAGCA 1624
|||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||
Sbjct 1559 ATTACTAAAGAGAGGCTTCACTCAGGAAACATTCCAGAACCAGAAGTGTCTGTTGCAGCA 1618
Query 1625 ATTGTAACCTGGCTACCTGATGAGTTATATGGAGGGATTAAGATAAGACATTTTAAGAGC 1684
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1619 ATTGTAACCTGGCTACCTGATGAGTTATATGGAGGGATCAAGATAAGACATTTTAAGAGC 1678
Query 1685 ATATCGTCTATTGACTGGCATCGTAAAGGAGACTATCTCTCAACAGTGATGGCATCCGGG 1744
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1679 ATATCGTCTATTGACTGGCATCGTAAAGGAGACTATCTCTCAACAGTGATGGCATCTGGC 1738
Query 1745 GAAACACGGGGAGTGGTATTGCACCAACTGTCAAAACAGAAAACACAAAGGCTCCCATTT 1804
||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1739 GAAACGCGGGGAGTGGTACTGCACCAACTCTCAAAACAGAAAACACAAAGGCTCCCATTT 1798
Query 1805 AAGATTCGTGGACTTCCAGTCTGTACACTTTTTCATCCCAGCCTTTCTTACTTCTTCGTT 1864
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1799 AAGATCCGCGGACTTCCAGTCTGCACACTTTTTCATCCCAGCCTTTCTTACTTCTTCGTT 1858
Query 1865 GCGACAAGAAAGGACGTGCGTGTTTACAATCTTTTGAAGCCAGGCGAGGCCACCAAAAAG 1924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 GCGACAAGAAAGGACGTGCGTGTTTACAATCTTTTGAAGCCAGGCGAGGCCACCAAAAAG 1918
Query 1925 CTTGAGACAGGATTGAGAGAAATCTCATCAATGGCGATTCATCCTGGTGGTGATAATCTG 1984
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1919 CTTGAGACGGGATTGAGAGAAATCTCATCCATGGCGATTCATCCTGGTGGTGATAATCTG 1978
Query 1985 ATAGTAGGAAGCAAAGAAGGGAAGATGTGTTGGTTTGACATGGATCTATCTTCGAAACCA 2044
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1979 ATAGTAGGAAGCAAAGAAGGGAAGATGTGTTGGTTTGACATGGATCTGTCTTCAAAACCG 2038
Query 2045 TACAAGACTCTCAAGAATCATCCTAAAGACATTACAAATGTGGCAGTTCATCGATCATAT 2104
|||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2039 TACAAGACGCTTAAGAATCACCCTAAAGACATTACAAATGTGGCAGTTCATCGGTCATAT 2098
Query 2105 CCGTTATTTGCTTCGTGCTCGGAGGATTCAACAGCTTATGTTTTCCATGGAATGGTGTAT 2164
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2099 CCGTTATTTGCTTCGTGCTCGGAAGATTCAACAGCTTATGTTTTCCATGGAATGGTGTAT 2158
Query 2165 AATGATCTGAACCAGAATCCTCTGATTGTGCCATTGGAGATTCTAAGAGGTCATTCTTCA 2224
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2159 AATGATCTGAATCAGAATCCTCTGATTGTCCCATTGGAGATTCTAAGAGGTCATTCTTCA 2218
Query 2225 AAAGGAGGAGTCTTGGACTGCAAGTTTCATCCGAGACAACCATGGCTATTCACTGCAGGC 2284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 AAAGGAGGAGTCTTGGACTGCAAGTTTCATCCGAGACAACCATGGCTATTCACTGCAGGC 2278
Query 2285 GCTGACTCTATTATCAAACTCTATTGCCACTAGAT 2319
|||||||| ||||||||||||||||||||||||||
Sbjct 2279 GCTGACTCGATTATCAAACTCTATTGCCACTAGAT 2313
> Ahg906059 jgi|Araly1|906059|Al_scaffold_0003_3187
Length=2520
Score = 1317 bits (713), Expect = 0.0
Identities = 1101/1284 (86%), Gaps = 43/1284 (3%)
Strand=Plus/Plus
Query 1056 CAGAGGAGGAGAAAGCCTCATATGAGTTGATGTTTGAGGAAGATCGTCCAAAATTCATTC 1115
||||||| ||| ||||||||| ||| ||| ||| ||||||||||||||||||||||||||
Sbjct 1256 CAGAGGAAGAGCAAGCCTCATGTGACTTGTTGTGTGAGGAAGATCGTCCAAAATTCATTC 1315
Query 1116 CTACAAGGTTTACATCTTTGAGAAGCATCCCTGCGTATGAGAATGCACTGAAGGAGTCTT 1175
||| || |||||||||| |||||||||| || || |||| ||||||||| || |||||||
Sbjct 1316 CTAAAAAGTTTACATCTCTGAGAAGCATTCCAGCATATGCGAATGCACTAAAAGAGTCTT 1375
Query 1176 TTGAGCGTTGTTTGGATCTATACCTATGTCCAAGAGTTCGAAAGAAGAGAATAAACATCG 1235
|||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
Sbjct 1376 TTGACCGTTGTTTGGATCTATACCTATGTCCGAGAGTCCGAAAGAAGAGAATAAACATTG 1435
Query 1236 ACCCTGAATCTTTGAAGCCTAAGCTACCTAGTAGGAAGGATCTTAGACCTTATCCTA-AC 1294
| ||||||||||| |||||||||||||||||||| || ||||||||| ||||||| | ||
Sbjct 1436 ATCCTGAATCTTTAAAGCCTAAGCTACCTAGTAGAAAAGATCTTAGAGCTTATCC-AGAC 1494
Query 1295 TCCTGTTATCTTGAATATAAAGGCCATACAGGGGCTGTTACTTCAATATCCACTGATAGT 1354
|| ||||||||||||||||||||||||||||| |||||| | |||||||||||| ||
Sbjct 1495 TCATGTTATCTTGAATATAAAGGCCATACAGGAAAAGTTACTACCATATCCACTGATTGT 1554
Query 1355 TCTGGCGAGTGGATAGCCTCAGGTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAG 1414
| |||| | |||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 1555 TATGGCCAATGGATAGCCTCAGGTTCAACAGATGGATCCGTCCGTATATGGGAAGTGGAA 1614
Query 1415 ACTGGTAGATGCCTTAAGGTCTGGCAGTTTGACGAAGCTA-TCATGTGTGTGGCTTGGAA 1473
||||||||||| |||||| ||||||| ||||| ||||| | ||| ||||||||||||||
Sbjct 1615 ACTGGTAGATGTCTTAAGATCTGGCAATTTGATGAAGCCATTCA-CTGTGTGGCTTGGAA 1673
Query 1474 TCCTCTTTCCAGGC-TTCCAG-TTTTAGCCGTTGCCATGGGACGAGATTTGTTTTTTC-T 1530
|||||||| | ||| |||| | |||||||| |||||||||||||||||||| || || |
Sbjct 1674 TCCTCTTTTC-GGCTTTCC-GATTTTAGCCATTGCCATGGGACGAGATTTG-GTTATCAT 1730
Query 1531 GAACACTGAACTTGGGACTGATGAGGAACAGGAAATTACTAAAGAGAGGCTTCACTCAGG 1590
|||||||||||||| ||||||| ||||||| ||| || | ||||| |||||||| |||
Sbjct 1731 TAACACTGAACTTGGTACTGATGTGGAACAGAAAAATATTGAAGAGCTGCTTCACTTAGG 1790
Query 1591 AAACATCCCAGAACCAGACGCATCTGTTGCAGCAATTGTAACCTGGCTACCTGATGAGTT 1650
|||| | ||||||||| | ||||||||||||||||||| || ||||| || ||||||
Sbjct 1791 AAACGTTCCAGAACCAAATGCATCTGTTGCAGCAATTGCAAGATGGCTTCCAGATGAGAA 1850
Query 1651 ATATGGAGGGATTAAGATAAGACATTTTAAGAGCATATCGTCTATTGACTGGCATCGTAA 1710
||||||||| || | ||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct 1851 ATATGGAGGAATCATGATTAGACATTTTAAGAACATATCCAGTATTGACTGGCATCGTAA 1910
Query 1711 AGGAGACTATCTCTCAACAGTGATGGCATCCGGGGAAACACGGGGAGTGGT-ATTGCACC 1769
||||||||| | || ||||| ||||||||||| |||||||| || || || ||| || |
Sbjct 1911 GGGAGACTATATGTCGACAGTCATGGCATCCGGCGAAACACGAGGTGTTGTAATT-CATC 1969
Query 1770 AACTGTC-AAAACAGAAAACACAAAGGCTCCCATTTAAGATTC-GTGGACTTCCAGT--C 1825
|| | || |||| || ||||||| | ||||| |||| || ||||||||||||| |
Sbjct 1970 AAATCTCGAAAA-AGCTTACACAAAAG---CCATTCAAGA-TCTGTGGACTTCCAGTGAC 2024
Query 1826 TGTACACTTTTTCATCCCAGCCTTTCTTACTTCTTCGTTGCGACAAGAAAGGACGTGCGT 1885
|| | ||||||||||| |||||||| ||||||||| | |||||||||||| |||||| |
Sbjct 2025 TG--CTCTTTTTCATCCTAGCCTTTCATACTTCTTCATCGCGACAAGAAAGAACGTGCAT 2082
Query 1886 GTTTACAATCTTTTGAAGCCAGGCGAGGCCACCAAAAAGCTTGAGAC-AGGATTGAGAGA 1944
||||||||||| || ||| || ||| || |||||||| || || | || |||| ||
Sbjct 2083 GTTTACAATCTGTTAAAGGTAGATGAGCCCGTAAAAAAGCTGGAAACTA-GAATGAGGGA 2141
Query 1945 AATCTCATCAATGGCGATTCATCCTGGTGGTGATAATCTGATAGTAGGAAGCAAAGAAGG 2004
|||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 2142 AATCTCATCAATGGCGATTCATCCTGGTGGTGATAATCTGATAGTAGGAAACA--GA-GG 2198
Query 2005 GAAGATGTGTTGGTTTGACATGGATCTATCTTCGAAACCATACAAGACTCTCAAGAATCA 2064
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 2199 GAAGATGTGTTGGTTTGACATGGATCTTTCTTCGAAGCCGTACAAGACTCTCAAGAATCA 2258
Query 2065 TCCTAAAGACATTACAAATGTGGCAGTT-CATCGAT-CATATCCGTTATTTGCTTCGTGC 2122
|||||| |||||||| |||| ||| ||| || || | | |||||||| |||||||||| |
Sbjct 2259 TCCTAAGGACATTACTAATGCGGC-GTTTCACCG-TGCGTATCCGTTGTTTGCTTCGTCC 2316
Query 2123 TCGGAGGATTCAACAGCTTATGTTTTCCATGGAATGGTGTATAATGATCTGAACCAGAAT 2182
|||||||| |||||||||| ||| |||||||||| |||||||||||||||||| |||||
Sbjct 2317 TCGGAGGACTCAACAGCTTTTGTGTTCCATGGAAAGGTGTATAATGATCTGAAGGAGAAT 2376
Query 2183 CCTCTGATTGTGCCATTGGAGATTCTAAGAGG---T-C-A-TTCTTCAAAAGGAGGAG-T 2235
|||||||||||||| || |||||||||||||| | | | ||||||||| || |||| |
Sbjct 2377 CCTCTGATTGTGCCGTTAGAGATTCTAAGAGGCCATTCTACTTCTTCAAATGGGGGAGGT 2436
Query 2236 --CTTGGACTGCAAGTTTCATCCGAGACAACCATGGCTATTCACTGCAGGCGCTGACTCT 2293
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2437 GTCTTGGACTGCAAGTTTCATCCAAGACAACCATGGCTATTCACTGCAGGGGCTGACTC- 2495
Query 2294 A-TTATCAAACTCTATTGCCACTA 2316
| |||| |||||||||||||||||
Sbjct 2496 AGTTATAAAACTCTATTGCCACTA 2519
> Ahg349526 jgi|Araly1|349526|fgenesh1_pg.C_scaffold_6000119
Length=1164
Score = 935 bits (506), Expect = 0.0
Identities = 815/960 (85%), Gaps = 38/960 (4%)
Strand=Plus/Plus
Query 1376 GGTTCAACTGATGGATCTGTCCGTATGTGGGAAGTGGAGACTGGTAGATGCCTTAAGGTC 1435
||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| ||
Sbjct 223 GGTTCAACTGATGGATCCGTCCGTATATGGGAAGTGGAAACTGGTAGATGTCTTAAGATC 282
Query 1436 TGGCAGTTTGACGAAGCTATCATGTGTGTGGCTTGGAATCCTCTTTCCAGGCTT-CCAGT 1494
||||||||||| |||||||| | ||||||||| ||||||||||| ||| ||||| || |
Sbjct 283 TGGCAGTTTGATGAAGCTATTAAGTGTGTGGCGTGGAATCCTCTCTCC-GGCTTATCAAT 341
Query 1495 TTTAGCCGTTGCCATGGGACGAGATTTGTTTTTTCTGAACACTGAACTTG-GGACTGATG 1553
| |||| ||||||||||||||||||||| || | |||||||||||||||| | ||||||
Sbjct 342 TGTAGCTGTTGCCATGGGACGAGATTTGGTTATCCTGAACACTGAACTTGACG-CTGATG 400
Query 1554 AGGAACAGGAAAT-TACTAAAGAGAGGCTTCACTCAGGAAACATCCCAGAACCAGACGCA 1612
||||||||| ||| || ||||||| ||| |||| ||||||| | ||||||| | |||
Sbjct 401 AGGAACAGG-AATATATTAAAGAGCTGCTGCACTTAGGAAACGTTATAGAACCAAATGCA 459
Query 1613 TCTGTTGCAGCAATTGTAACCTGGCTACCTGATGAGTTATATGGAGGGATTAAGATAAGA 1672
|| | ||||||| || ||||| || |||||| |||||||||||||| ||| |||
Sbjct 460 TC---T---GCAATTGCAAGATGGCTTCCAGATGAGAAATATGGAGGGATTATGATTAGA 513
Query 1673 CATTTTAAGAGCATATCGTCTATTGACTGGCATCGTAAAGGAGACTATCTCTCAACAGTG 1732
|||||||||| | ||||| |||||||||||||||||| ||||||||||| || |||||
Sbjct 514 CATTTTAAGAACGTATCGAGTATTGACTGGCATCGTAAGGGAGACTATCTGTCGACAGTC 573
Query 1733 ATGGCATCCGGGGAAACACGGGGAGTGGT-ATTGCACCAACTGTC-AAAACAGAAAACAC 1790
||||||||||| ||||| || || || || ||| || ||| | || |||| || ||||
Sbjct 574 ATGGCATCCGGCGAAACGCGAGGTGTTGTAATT-CATCAAATCTCGAAAA-AGCTTACAC 631
Query 1791 AAAGGCTCCCATTTAAGATTCGTGGACTTCCAGT--CTGTACACTTTTTCATCCCAGCCT 1848
||| | ||| || ||||| |||||||||||||| ||| || |||||||||||||||
Sbjct 632 AAAAG--CCC-TTCAAGATCCGTGGACTTCCAGTGACTG--CAGTTTTTCATCCCAGCCG 686
Query 1849 TTCTTACTTCTTCGTTGCGACAAGAAAGGACGTGCGTGTTTACAATCTTTTGAAGCCAGG 1908
||| ||||| ||| | |||||||||||| ||||||||||||||||||| || ||| ||
Sbjct 687 TTCATACTTGTTCATCGCGACAAGAAAGAACGTGCGTGTTTACAATCTGTTAAAGGTAGA 746
Query 1909 CGAGGCC-ACCAAAAAGCTTGAGACAGGATTGAGAGAAATCTCATCAATGGCGATTCATC 1967
|| ||| ||||||||| ||||| ||| |||| |||||||||||| ||||||||||||
Sbjct 747 TGA-GCCTGTCAAAAAGCTCGAGACTGGAATGAGGGAAATCTCATCACTGGCGATTCATC 805
Query 1968 CTGGTGGTGATAATCTGATAGTAGGAAGCAAAGAAGGGAAGATGTGTTGGTTTGACATGG 2027
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 806 CTGGTGGTGATAATCTGATAGTAGGAAGTAAAGAAGGGAAGATGTGTTGGTTTGACATGG 865
Query 2028 ATCTATCTTCGAAA-CCATACAAGACTCTCAAGAATCATCCTAAAGACATTACAAATGTG 2086
|||| ||||| ||| || ||||||||||||||||||||||||| ||||| || ||||||
Sbjct 866 ATCTTTCTTC-AAAGCCGTACAAGACTCTCAAGAATCATCCTACGGACATCACTAATGTG 924
Query 2087 GCAGTT-CATCGATCATATCCGTTATTTGCTTCGTGCTCGGAGGATTCAACAGCTTATGT 2145
| ||| || || || |||||||| |||||||||| ||| ||||| |||||||||| |||
Sbjct 925 GT-GTTTCACCGTTCGTATCCGTTGTTTGCTTCGTCCTCAGAGGACTCAACAGCTTTTGT 983
Query 2146 TTTCCATGGAATGGTGTATAATGATCTGAACCAGAATCCTCTGATTGTGCCATTGGAGAT 2205
|||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 984 GTTCCATGGAAAGGTGTATAATGATCTGAAGGAGAATCCTCTGATTGTGCCGTTGGAGAT 1043
Query 2206 TCTAAGAGG---T-C-A-TTCTTCAAAAGG---AGGAGTCTTGGACTGCAAGTTTCATCC 2256
||||||||| | | | |||||| || || |||||||||||||||||||||||||||
Sbjct 1044 TCTAAGAGGCCATTCTACTTCTTCCAATGGTGGAGGAGTCTTGGACTGCAAGTTTCATCC 1103
Query 2257 GAGACAACCATGGCTATTCACTGCAGGCGCTGACTCTATTATCAAACTCTATTGCCACTA 2316
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||
Sbjct 1104 CAGACAACCATGGCTATTCACTGCAGGGGCTGACTCAAATATCAAACTCTATTGCCACTA 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96520680830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5