BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40370.1 Length=1782 Score E Sequences producing significant alignments: (Bits) Value Ahg934840 jgi|Araly1|934840|scaffold_402828.1 2665 0.0 > Ahg934840 jgi|Araly1|934840|scaffold_402828.1 Length=1786 Score = 2665 bits (1443), Expect = 0.0 Identities = 1675/1786 (94%), Gaps = 20/1786 (1%) Strand=Plus/Plus Query 2 GAAATCACATCAATGGATG-TCACCAAGAGCCTCCTCTGCTTCATCTCTTTCGTC-GCCT 59 |||||| ||| ||||| | || ||||||||| | | |||||||||||| | | | | Sbjct 9 GAAATCGCATTGATGGA-GATCGTCAAGAGCCT-C-AT-CTTCATCTCTTT-GGCTGTCG 63 Query 60 TTCTTCTCTTCTCCTCCGTGGCAGAAGCCAAC---AAAGCACACCACCACGAGTTCATAA 116 ||||||||||| | ||| | |||||||||||| ||||||||||||||||||||||| | Sbjct 64 TTCTTCTCTTCGCTTCCATAGCAGAAGCCAACATTAAAGCACACCACCACGAGTTCATTA 123 Query 117 TACAAGCGAC-AAAGGTGAAGAGACTATGTGAAACACACAACAGTATTACAGTCAATGGA 175 |||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct 124 TACAAGCGACGAAA-GTGAAGAGACTATGTGAAACACACAACAGCATTACGGTCAACGGA 182 Query 176 ATGTTTCCCGGTCCAATGCTTGTAGTCAACAACGGTGACACTCTCGTCGTCAAAGTTATC 235 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 183 ATGTTTCCCGGTCCAATGCTTGTAGTCAACAACGGTGATACTCTCGTCGTCAAAGTTATT 242 Query 236 AACCGGGCCCGGTACAACATCACAATCCACTGGCACGGTGTGAGGCAGATGCGAACCGGT 295 |||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 243 AACCGGGCTCGGTACAACATAACAATCCACTGGCACGGTGTGAGGCAAATGCGAACCGGT 302 Query 296 TGGGCTGACGGACCGGAATTTGTGACCCAATGCCCAATCAGACCGGGATCAAGTTACACG 355 ||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 303 TGGGCAGATGGACCGGAATTTGTGACCCAATGTCCAATCAGACCGGGATCAAGCTACACG 362 Query 356 TACCGGTTTACAATTCAAGGACAGGAAGGTACACTTTGGTGGCATGCTCATAGTTCGTGG 415 ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 363 TACCGGTTTACTATCCAAGGACAAGAAGGTACACTTTGGTGGCATGCTCATAGTTCGTGG 422 Query 416 CTTAGAGCAACTGTCTACGGTTCACTTCTCGTCTTTCCTCCTGCTGGTTCGTCTTACCCA 475 |||||||| |||||||||||||| ||||| ||| ||||||| ||||| ||||||||||| Sbjct 423 CTTAGAGCCACTGTCTACGGTTCGCTTCTTGTCCTTCCTCCGGCTGGCTCGTCTTACCCG 482 Query 476 TTCACAAAACCCCACCGCAACGTCCCTCTCCTTCTTGGTGAATGGTGGGACGCAAATCCG 535 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 TTCACAAATCCCCACCGCAACGTCCCTCTCCTTCTTGGTGAATGGTGGGACGCAAATCCG 542 Query 536 GTTGATGTGTTGAGAGAATCTATACGAACCGGAGGAGCTCCGAATAACTCAGACGCTTAC 595 ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct 543 GTTGATGTGTTGAGAGAATCTATACGAACCGGAGGAGCTCCTAATAACTCCGACGCTTAC 602 Query 596 ACCATCAATGGTCAACCTGGCGATCTCTATAAATGCTCTTCTCAAGATACGACAGTAGTA 655 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 603 ACCATCAATGGTCAACCAGGCGATCTCTATAAATGCTCTTCTCAAGATACGACAATAGTA 662 Query 656 CCAATAAATGTTGGTGAGACTATACTACTACGAGTAATAAACTCAGCATTAAACCAACCG 715 |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 663 CCAATAAACGTTGGTGAGACTATACTACTACGGGTAATAAACTCAGCATTGAACCAACCG 722 Query 716 TTATTCTTCACGGTGGCTAATCACAAACTCACGGTGGTCGGAGCTGACGCGTCATACCTA 775 |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||| || Sbjct 723 TTATTCTTCACGGTTGCTAACCACAAGCTCACGGTGGTGGGAGCTGACGCGTCTTACGTA 782 Query 776 AAACCCTTCACCACTAACGTGATAGTTCTTGGCCCGGGACAAACCACAGATGTCCTCATA 835 ||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| Sbjct 783 AAACCCTTCACCACTAACGTGATTGTTCTTGGCCCGGGCCAAACCACTGATGTCCTCATA 842 Query 836 ACCGGTGACCAACCACCAAATCGCTACTACATGGCCGCAAGAGCTTACCAAAGCGCCCAA 895 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 843 ACCGGTGACCAACCACCAAACCGTTACTACATGGCCGCAAGAGCTTACCAAAGCGCCCAA 902 Query 896 AACGCACCGTTTGGAAACACAACCACAACAGCAATCCTTCAATACAAATCCGCCCCTTGT 955 |||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 903 AACGCACCATTTGGAAACACAACTACAACCGCAATCCTTCAATACAAATCCGCCCCTTGT 962 Query 956 TGCGGTGTAGGCGGCGGAAGTGGAACCAAGAAGGGTAATTCCTTCAAACCGATCATGCCT 1015 ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| Sbjct 963 TGCGGTGTAGGCGGCGGAAGTGGAACCAAGAAGGGTATTTCCGTCAAACCAATCATGCCT 1022 Query 1016 ATCCTCCCTGCCTACAACGACACAAACACCGTCACACGTTTCAGCCAAAGCTTCCGGTCA 1075 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1023 ATCCTCCCTGCCTACAACGACACCAACACCGTCACACGTTTCAGCCAAAGCTTCCGGTCA 1082 Query 1076 CTTAGACGAGCTGAGGTTCCGACAGAAATCGACGAGAATCTCTTCGTAACCA-TCGGACT 1134 || ||| |||||||||||||||||||||||||||||||||| || ||||| | ||||||| Sbjct 1083 CTAAGAAGAGCTGAGGTTCCGACAGAAATCGACGAGAATCTGTTTGTAAC-AGTCGGACT 1141 Query 1135 CGGTCTCAACAACTGTCCTAAGAACTTCAGATCAAGAAGATGTCAAGGTCCTAACGGCAC 1194 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1142 CGGTCTCAACAACTGTCCTAAGAACTTTAGATCAAGAAGATGTCAAGGTCCTAACGGCAC 1201 Query 1195 ACGTTTCACTGCATCGATGAACAACGTTTCATTTGCTCTTCCAAGTAACTACTCACTCCT 1254 ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 1202 ACGTTTCACTGCATCGATGAACAACATTTCATTTGCTCTCCCAAGTAACTACTCACTCCT 1261 Query 1255 TCAAGCTCACCACCATGGGATCCCCGGAGTCTTCACAACCGATTTTCCGGCGAAGCCTCC 1314 |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 1262 TCAAGCTCACCACCATGGGATCCCCGGAGTCTTCACAACCGATTTTCCTGCCAAACCTCC 1321 Query 1315 GGTGAAATTTGATTACACTGGTAACAACATAAGCCGATCTCTCTACCAACCTGATAGAGG 1374 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1322 GGTGAAATTTGATTACACAGGTAACAACATAAGCCGATCTCTCTACCAACCTGATAGAGG 1381 Query 1375 GACTAAGCTATACAAACTCAAGTATGGATCAAGGGTTCAGATTGTTCTTCAAGACACAGG 1434 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1382 GACTAAGCTATACAAACTCAAGTATGGATCAAGGGTTCAGATTGTTCTTCAGGACACTGG 1441 Query 1435 TATAGTAACTCCCGAAAACCATCCCATTCATCTACACGGCTACGATTTCTACATTATCGC 1494 |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1442 TATAGTAACTCCTGAAAATCATCCAATTCATCTACACGGCTACGATTTCTACATTATCGC 1501 Query 1495 CGAGGGTTTCGGTAACTTCAATCCCAAGAAAGATACCGCGAAATTCAATCTTGAAGACCC 1554 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1502 CGAAGGTTTCGGTAACTTCAATCCCAAGAAAGATACCGCGAAATTCAATCTTGAAGACCC 1561 Query 1555 GCCTCTCAGAAATACTGTCGGTGTACCTGTTAATGGTTGGGCCGTCATCAGATTCATCGC 1614 |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct 1562 GCCTCTCAGAAATACTGTTGGTGTACCTGTTAATGGTTGGGCCGTCATCAGATTCGTCGC 1621 Query 1615 AGACAACCCTGGGGTCTGGATAATGCATTGTCATCTAGATGCACACATATCGTGGGGACT 1674 ||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| || Sbjct 1622 AGACAACCCTGGGGTTTGGATAATGCACTGTCATCTAGATGCACACATATCTTGGGGGCT 1681 Query 1675 AGCCATGGCTTTTTTGGTTGAGAATGGAAATGGAGTTTTGCAGACAATAGAACAGCCTCC 1734 |||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1682 AGCCATGGCTTTCTTGGTTGAGAATGGAAATGGAGTTTTGCAGACAATGGAGCAGCCTCC 1741 Query 1735 T-CATGATTTGCCCGTTTGTTA---GGAGTTCAAGAAC-TTTGTAA 1775 | | |||||| ||||| ||||| ||||||||||| | ||||||| Sbjct 1742 TGC-TGATTTACCCGTATGTTATTAGGAGTTCAAGATCCTTTGTAA 1786 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66886470220 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5