BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40370.1
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934840 jgi|Araly1|934840|scaffold_402828.1 2665 0.0
> Ahg934840 jgi|Araly1|934840|scaffold_402828.1
Length=1786
Score = 2665 bits (1443), Expect = 0.0
Identities = 1675/1786 (94%), Gaps = 20/1786 (1%)
Strand=Plus/Plus
Query 2 GAAATCACATCAATGGATG-TCACCAAGAGCCTCCTCTGCTTCATCTCTTTCGTC-GCCT 59
|||||| ||| ||||| | || ||||||||| | | |||||||||||| | | | |
Sbjct 9 GAAATCGCATTGATGGA-GATCGTCAAGAGCCT-C-AT-CTTCATCTCTTT-GGCTGTCG 63
Query 60 TTCTTCTCTTCTCCTCCGTGGCAGAAGCCAAC---AAAGCACACCACCACGAGTTCATAA 116
||||||||||| | ||| | |||||||||||| ||||||||||||||||||||||| |
Sbjct 64 TTCTTCTCTTCGCTTCCATAGCAGAAGCCAACATTAAAGCACACCACCACGAGTTCATTA 123
Query 117 TACAAGCGAC-AAAGGTGAAGAGACTATGTGAAACACACAACAGTATTACAGTCAATGGA 175
|||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 124 TACAAGCGACGAAA-GTGAAGAGACTATGTGAAACACACAACAGCATTACGGTCAACGGA 182
Query 176 ATGTTTCCCGGTCCAATGCTTGTAGTCAACAACGGTGACACTCTCGTCGTCAAAGTTATC 235
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 183 ATGTTTCCCGGTCCAATGCTTGTAGTCAACAACGGTGATACTCTCGTCGTCAAAGTTATT 242
Query 236 AACCGGGCCCGGTACAACATCACAATCCACTGGCACGGTGTGAGGCAGATGCGAACCGGT 295
|||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 243 AACCGGGCTCGGTACAACATAACAATCCACTGGCACGGTGTGAGGCAAATGCGAACCGGT 302
Query 296 TGGGCTGACGGACCGGAATTTGTGACCCAATGCCCAATCAGACCGGGATCAAGTTACACG 355
||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 303 TGGGCAGATGGACCGGAATTTGTGACCCAATGTCCAATCAGACCGGGATCAAGCTACACG 362
Query 356 TACCGGTTTACAATTCAAGGACAGGAAGGTACACTTTGGTGGCATGCTCATAGTTCGTGG 415
||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 363 TACCGGTTTACTATCCAAGGACAAGAAGGTACACTTTGGTGGCATGCTCATAGTTCGTGG 422
Query 416 CTTAGAGCAACTGTCTACGGTTCACTTCTCGTCTTTCCTCCTGCTGGTTCGTCTTACCCA 475
|||||||| |||||||||||||| ||||| ||| ||||||| ||||| |||||||||||
Sbjct 423 CTTAGAGCCACTGTCTACGGTTCGCTTCTTGTCCTTCCTCCGGCTGGCTCGTCTTACCCG 482
Query 476 TTCACAAAACCCCACCGCAACGTCCCTCTCCTTCTTGGTGAATGGTGGGACGCAAATCCG 535
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TTCACAAATCCCCACCGCAACGTCCCTCTCCTTCTTGGTGAATGGTGGGACGCAAATCCG 542
Query 536 GTTGATGTGTTGAGAGAATCTATACGAACCGGAGGAGCTCCGAATAACTCAGACGCTTAC 595
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 543 GTTGATGTGTTGAGAGAATCTATACGAACCGGAGGAGCTCCTAATAACTCCGACGCTTAC 602
Query 596 ACCATCAATGGTCAACCTGGCGATCTCTATAAATGCTCTTCTCAAGATACGACAGTAGTA 655
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 603 ACCATCAATGGTCAACCAGGCGATCTCTATAAATGCTCTTCTCAAGATACGACAATAGTA 662
Query 656 CCAATAAATGTTGGTGAGACTATACTACTACGAGTAATAAACTCAGCATTAAACCAACCG 715
|||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 663 CCAATAAACGTTGGTGAGACTATACTACTACGGGTAATAAACTCAGCATTGAACCAACCG 722
Query 716 TTATTCTTCACGGTGGCTAATCACAAACTCACGGTGGTCGGAGCTGACGCGTCATACCTA 775
|||||||||||||| ||||| ||||| ||||||||||| |||||||||||||| ||| ||
Sbjct 723 TTATTCTTCACGGTTGCTAACCACAAGCTCACGGTGGTGGGAGCTGACGCGTCTTACGTA 782
Query 776 AAACCCTTCACCACTAACGTGATAGTTCTTGGCCCGGGACAAACCACAGATGTCCTCATA 835
||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 783 AAACCCTTCACCACTAACGTGATTGTTCTTGGCCCGGGCCAAACCACTGATGTCCTCATA 842
Query 836 ACCGGTGACCAACCACCAAATCGCTACTACATGGCCGCAAGAGCTTACCAAAGCGCCCAA 895
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 843 ACCGGTGACCAACCACCAAACCGTTACTACATGGCCGCAAGAGCTTACCAAAGCGCCCAA 902
Query 896 AACGCACCGTTTGGAAACACAACCACAACAGCAATCCTTCAATACAAATCCGCCCCTTGT 955
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 903 AACGCACCATTTGGAAACACAACTACAACCGCAATCCTTCAATACAAATCCGCCCCTTGT 962
Query 956 TGCGGTGTAGGCGGCGGAAGTGGAACCAAGAAGGGTAATTCCTTCAAACCGATCATGCCT 1015
||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct 963 TGCGGTGTAGGCGGCGGAAGTGGAACCAAGAAGGGTATTTCCGTCAAACCAATCATGCCT 1022
Query 1016 ATCCTCCCTGCCTACAACGACACAAACACCGTCACACGTTTCAGCCAAAGCTTCCGGTCA 1075
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1023 ATCCTCCCTGCCTACAACGACACCAACACCGTCACACGTTTCAGCCAAAGCTTCCGGTCA 1082
Query 1076 CTTAGACGAGCTGAGGTTCCGACAGAAATCGACGAGAATCTCTTCGTAACCA-TCGGACT 1134
|| ||| |||||||||||||||||||||||||||||||||| || ||||| | |||||||
Sbjct 1083 CTAAGAAGAGCTGAGGTTCCGACAGAAATCGACGAGAATCTGTTTGTAAC-AGTCGGACT 1141
Query 1135 CGGTCTCAACAACTGTCCTAAGAACTTCAGATCAAGAAGATGTCAAGGTCCTAACGGCAC 1194
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1142 CGGTCTCAACAACTGTCCTAAGAACTTTAGATCAAGAAGATGTCAAGGTCCTAACGGCAC 1201
Query 1195 ACGTTTCACTGCATCGATGAACAACGTTTCATTTGCTCTTCCAAGTAACTACTCACTCCT 1254
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1202 ACGTTTCACTGCATCGATGAACAACATTTCATTTGCTCTCCCAAGTAACTACTCACTCCT 1261
Query 1255 TCAAGCTCACCACCATGGGATCCCCGGAGTCTTCACAACCGATTTTCCGGCGAAGCCTCC 1314
|||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1262 TCAAGCTCACCACCATGGGATCCCCGGAGTCTTCACAACCGATTTTCCTGCCAAACCTCC 1321
Query 1315 GGTGAAATTTGATTACACTGGTAACAACATAAGCCGATCTCTCTACCAACCTGATAGAGG 1374
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 GGTGAAATTTGATTACACAGGTAACAACATAAGCCGATCTCTCTACCAACCTGATAGAGG 1381
Query 1375 GACTAAGCTATACAAACTCAAGTATGGATCAAGGGTTCAGATTGTTCTTCAAGACACAGG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1382 GACTAAGCTATACAAACTCAAGTATGGATCAAGGGTTCAGATTGTTCTTCAGGACACTGG 1441
Query 1435 TATAGTAACTCCCGAAAACCATCCCATTCATCTACACGGCTACGATTTCTACATTATCGC 1494
|||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1442 TATAGTAACTCCTGAAAATCATCCAATTCATCTACACGGCTACGATTTCTACATTATCGC 1501
Query 1495 CGAGGGTTTCGGTAACTTCAATCCCAAGAAAGATACCGCGAAATTCAATCTTGAAGACCC 1554
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 CGAAGGTTTCGGTAACTTCAATCCCAAGAAAGATACCGCGAAATTCAATCTTGAAGACCC 1561
Query 1555 GCCTCTCAGAAATACTGTCGGTGTACCTGTTAATGGTTGGGCCGTCATCAGATTCATCGC 1614
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1562 GCCTCTCAGAAATACTGTTGGTGTACCTGTTAATGGTTGGGCCGTCATCAGATTCGTCGC 1621
Query 1615 AGACAACCCTGGGGTCTGGATAATGCATTGTCATCTAGATGCACACATATCGTGGGGACT 1674
||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1622 AGACAACCCTGGGGTTTGGATAATGCACTGTCATCTAGATGCACACATATCTTGGGGGCT 1681
Query 1675 AGCCATGGCTTTTTTGGTTGAGAATGGAAATGGAGTTTTGCAGACAATAGAACAGCCTCC 1734
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1682 AGCCATGGCTTTCTTGGTTGAGAATGGAAATGGAGTTTTGCAGACAATGGAGCAGCCTCC 1741
Query 1735 T-CATGATTTGCCCGTTTGTTA---GGAGTTCAAGAAC-TTTGTAA 1775
| | |||||| ||||| ||||| ||||||||||| | |||||||
Sbjct 1742 TGC-TGATTTACCCGTATGTTATTAGGAGTTCAAGATCCTTTGTAA 1786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66886470220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5