BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40390.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483093 jgi|Araly1|483093|fgenesh2_kg.4__2153__AT2G40390.1 2470 0.0
> Ahg483093 jgi|Araly1|483093|fgenesh2_kg.4__2153__AT2G40390.1
Length=1582
Score = 2470 bits (1337), Expect = 0.0
Identities = 1465/1527 (96%), Gaps = 7/1527 (0%)
Strand=Plus/Plus
Query 74 ATATTCAATATTAGCTCTAATGGCTTCTTGTGACACACCTGATGCGTTTGCTTGGCTTCA 133
||| |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 19 ATA-TCAAGATTAGCTTTAATGGCTTCTTGTGACACACCTGATGCATTTGCTTGGCTTCA 77
Query 134 AACTCTTCCTCCTCTTTCTCTATGGAAAGGAAATTTAATGTCCATGTGTATTTGCTCTCC 193
||||||||||||||| |||| ||||||| |||||| ||||||||||||||||||||||||
Sbjct 78 AACTCTTCCTCCTCTCTCTCAATGGAAAAGAAATTCAATGTCCATGTGTATTTGCTCTCC 137
Query 194 AAATTCATCACACCCATCTTTGAACTTCACTCTTACTCGTACCCCTCAATCTCCAAACTT 253
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 138 AAATTCGTCACACCCATCTTTGAACTTCTCTCTTACTCGTACCCCTCAATCTCCAAACTT 197
Query 254 TTTCACCTTCTCGATAGTAGCCAATTTCAAGACTCCTATTACTCTCTTTATTTCAAAAAC 313
|||||||||||| ||||||||||||||||||| |||||||||||||||| |||| || |
Sbjct 198 TTTCACCTTCTCTATAGTAGCCAATTTCAAGATTCCTATTACTCTCTTTGTTTCTAAGCC 257
Query 314 TTTCAGAACCATTAGCACTAATTCAACTACTTTCCTCAATGAAAACGTCATATCTACTCT 373
|||||||||||||| |||||| ||||||| ||||||||||||||| ||||| ||||||||
Sbjct 258 TTTCAGAACCATTACCACTAACTCAACTAATTTCCTCAATGAAAATGTCATCTCTACTCT 317
Query 374 ATTGATGGGTTTTGTCGACGTTGTTCTCAACTATAACGTCAAGAGAACCACTTGTTCAAT 433
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 318 ATTGATGGGTTTTGTCGACGTAGTTCTCAACTATAACGTCAAAAGAACCACTTGTTCAAT 377
Query 434 CCAACTCCAAAACCTAGGCTCCACTTCTAACCTCAAAGACGTTTTCAACCTCGCTTTCTT 493
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 378 CCAACTCCAAAACCTAGGCTCTACTTCTAACCTCAAAGACGTTTTCAACCTCGCGTTCTT 437
Query 494 CACTTTCGTGTTCCTCATCTGCATCTACGAGGCGCCAACGAGCCTGA-GAACAACTTGTC 552
|||||||||||||||||||||||| ||||| |||||||||||||| | ||||||||||||
Sbjct 438 CACTTTCGTGTTCCTCATCTGCATATACGAAGCGCCAACGAGCCT-ACGAACAACTTGTC 496
Query 553 TCAAAACGGTGAAAGATCAGCTGGTAACTTGTAGGTCAAGGCAGGGCTCTAAGTTGCTCA 612
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 497 TCAAAACGGTGAAAGATCAGCTGGTAACTTGTAGGTCAAGGCAGGGCTCCAAGTTGCTCA 556
Query 613 TGGTGCAACTAGGCTCTAACCTTGAAGAACAATGGATGAGATCGCTGAACCTTGCAATAA 672
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 557 TGGTCCAACTAGGCTCTAACCTTGAAGAACAATGGATGAGATCGCTGAATCTTGCGATAA 616
Query 673 CCAACTGGATCATCGAGATCAAAGCGTTTCAGCATCTCAAGTCTCCTTCTCCTTTGTTTT 732
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 617 CCAACTGGATCATCGAGATTAAAGCGTTTCAGCATCTCAAGTCTCCTACTCCTTTGTTTT 676
Query 733 CATATGCTTTCTCGACTCAAGGTCTATGGAAAGTTCATATGTATTGTCCTGTGGTAGCAA 792
| ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 677 CTTATGCTTTCTCCACTCAAGGTTTGTGGAAAGTTCATATGTATTGTCCTGTGGTAGCAA 736
Query 793 TGGAAATGGAGAGCGTAAATAGTTCTCTAAACGACGAGAGATTGTTCTTCTCGCTAAACT 852
||||||||||||||||||||||| | || ||||||||||||||||||||||||| ||||
Sbjct 737 TGGAAATGGAGAGCGTAAATAGTGCACTGCACGACGAGAGATTGTTCTTCTCGCTCAACT 796
Query 853 ATCATCAACTTGAAGGTGTAATCCAATTGAACCACAGGATTTACGTTCGTGAAAAGTGGT 912
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 797 ATCATCAACTTGAAGGTGTAATCCAATTCAACCACAAGATTTACGTTCGTGAAAAGTGGT 856
Query 913 TTAACGTCGCAGTAAATATTGACAACGTCAGGTGCGACATAATAAGGCTTGTGAACGAGA 972
||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 857 TTAACATCGCAGTGAATATTGACAACGTCAGGTGCGACATAATAAGGCTCGTGAACGAGA 916
Query 973 AACTAT-TATCGGAACGTGGCATGGGAACAGAGGAAAAACATTTCCCCTCAAGAATATCA 1031
|||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 917 AACT-TCTATCGGAACGTGGCATGGGAACAGAGGAAAAACATTTTCCCTCAAGAATATCA 975
Query 1032 TTGCAACTAACACCAACGAATCAATCAAACATCTTAATGGTATCCGTACAAAAATCTTCA 1091
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 976 TTGCAACTAACACCAACGATTCAATCAAACATCTTAATGGTATCCGTACAAAAATCTTCA 1035
Query 1092 GAAAACCCATTGACAGAATTCGAAGTAGAGAAAGGCATAGAAGCAACAATAGATCCACCA 1151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GAAAACCCATTGACAGAATTCGAAGTAGAGAAAGGCATAGAAGCAACAATAGATCCACCA 1095
Query 1152 AACACATTCTTTGGACTAAAAGTCTCAGCCAACGAGACCACAACAAAAAGCATGAAGCCA 1211
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 AACACATTCTTTGGACTGAAAGTCTCAGCCAACGAGACCACAACAAAAAGCATGAAGCCA 1155
Query 1212 TGGAAGTTCGAGGAATGGGTTCATGGTTATAGCGCCAATCTCACTTGGTTTCTCCATGAT 1271
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1156 TGGAAGTTCGAGGAATGGGTTCATGGTTATAGCGCCAATCTTACTTGGTTTCTCCATGAT 1215
Query 1272 CTTGACGATGGAAGAGAAGTTTCGTCCTCTAAACCATCGAAAGTCTCGATGATGAACCCT 1331
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1216 CTTGACGATGGAAGAGAAGTTTCATCCTCAAAACCATCGAAGGTCTCGATGATGAACCCT 1275
Query 1332 CGAGCTTGGTTCAAGAACCGGTACTCGAGCGCGTTTAGACCGTTCACGAAGCAAGGAGGA 1391
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1276 CGAGCTTGGTTCAAGAACCGGTACTCGAGCGCGTTTAGACCATTCACGAAGCAAGGAGGA 1335
Query 1392 GTTGTGTTTGCAGGAGATAGTTATGGGCAAAGCGTTTTGTGGAAAGTTGATAAAACGGCT 1451
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1336 GTTGTGTTTGCAGGAGATAGTTATGGGCAAAGCGTTTTGTGGAAAGTAGATAAAACGGCT 1395
Query 1452 ATTGGGAAAGTAATGGAGTTTGAGGTTAAAGGTTGCGTTTGGTTGACTTATTGGCCTAAC 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 ATTGGGAAAGTAATGGAGTTTGAGGTTAAAGGTTGCGTTTGGTTGACTTATTGGCCTAAC 1455
Query 1512 AAGCATCATACTTTTTATAGTGATACTAGAAAGTTGGAATTTAAGGAGATGCTTTACCTC 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1456 AAGCATCATACTTTTTATAGTGATACTAGAAAGTTGGAATTTAAGGAGATGCTTTACCTC 1515
Query 1572 AATCTTCCTTAGATATTTC-TTTTCTT 1597
|||||||||||||| |||| |||||||
Sbjct 1516 AATCTTCCTTAGAT-TTTCGTTTTCTT 1541
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5