BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40400.1
Length=2425
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483095 jgi|Araly1|483095|fgenesh2_kg.4__2155__AT2G40400.1 3773 0.0
Ahg486055 jgi|Araly1|486055|fgenesh2_kg.5__2047__AT3G56140.1 1940 0.0
> Ahg483095 jgi|Araly1|483095|fgenesh2_kg.4__2155__AT2G40400.1
Length=2415
Score = 3773 bits (2043), Expect = 0.0
Identities = 2307/2430 (95%), Gaps = 35/2430 (1%)
Strand=Plus/Plus
Query 3 AGCAATGCAAAAAGCTGACGTGTACCAATGAAGCCCACGACCAATGGTGGGCTCTTGGCT 62
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 AGCAATGCAAAAAGCTGACGTGTACCAATGAAGCCCACGACCAA---TGGGCTCTTGGCT 57
Query 63 TCTCAATCATCTTCCTCCTTCTCGTTTCCGAGATTCCGCGGCCAACTTCCGATTATCTTC 122
|| | || | | | | | ||||||||||||||||||||||||||||||||||||||
Sbjct 58 TC-C--TC--C-T--T-C--C-CGTTTCCGAGATTCCGCGGCCAACTTCCGATTATCTTC 105
Query 123 TCAGCCAATAATAATCAGAAGAAGAAGAA-T-CTT-CCAAATCCAAACGTCGTCACTCTT 179
|||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||
Sbjct 106 TCAGCCAATAATAATCAGAAGACGAAGAAGTATTTCCCAAATCCAAACGTCGTCACTCTT 165
Query 180 TGTCTCCACTCTCATTCCAATGTCTCCTCCTCTCAAATCGCCGTCACTCGCCGCGCAATT 239
|| ||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 166 TGCCTCCACTCTGATTCCGATGTCTCTTCCTCTCAAATCGCCGTCACTCGCCGCGCAATT 225
Query 240 CTCGTCGCACCACCGCTCCTCGCCGCCGCCGCTTCGTTGTTTCTCTCTATTTCCTCAGCT 299
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 226 CTCGTCGCACCACCGCTCCTCGCCGCCGCTGCTTCGTTGTTTCTCTCTATTTCCTCAGCT 285
Query 300 GCCTCTGCTGAGACTTCTG-CGGAATCAGTAG------CT-CT--TCCTCCTGTTG-C-T 347
|| |||||||||||||| | |||||||||||| || || ||||||||||| | |
Sbjct 286 GCTTCTGCTGAGACTTC-GACGGAATCAGTAGCTCTTCCTCCTCCTCCTCCTGTTGCCGT 344
Query 348 -ACTGCTCCTCCTCCTCCGCCTGTGGAGAAGGAAGAGGCGATAACTTCTAGAATCTATGA 406
|||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 345 CACTGCTCCACCTCCGCCGCCTGTGGAGAAGGAAGAGTTGATAACTTCTAGAATCTATGA 404
Query 407 CGCGTCTGTGCTTGGTGAGCCGATGGCTGTTGGGAAAGATAAGAAGAGAGTGTGGGAGAA 466
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 405 CGCGTCTGTGCTTGGTGAGCCGATGGCTGTTGGGAAAGATAAGAAGAGAGTTTGGGAGAA 464
Query 467 GCTATTGAATGCGAGGATTGTCTATCTCGGAGAAGCAGAACAAGTGCCTACAAGAGACGA 526
| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 465 GTTGTTGAATGCGAGGATTGTGTATCTCGGAGAAGCAGAACAAGTGCCTACAAGAGACGA 524
Query 527 CAAGGTTCTCGAGCTCGAAATCGTGAGGAATTTGAGGAAGCGATGTATTGAGAGCGATCG 586
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 525 CAAGGTTCTTGAGCTCGAAATCGTGAGGAATTTGAGGAAGCGATGTATCGAGAGCGATCG 584
Query 587 TCAGTTATCTTTAGCATTGGAAGCATTTCCTCTTGATTTGCAGGAACAGTTAAACCAATA 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TCAGTTATCTTTAGCATTGGAAGCATTTCCTCTTGATTTGCAGGAACAGTTAAACCAATA 644
Query 647 CATGGACAAGAGGATGGATGGAGAGGTATTGAAGTCGTATGTATCACATTGGCCAGTCCA 706
|||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||| ||
Sbjct 645 CATGGATAAGAGGATGGATGCAGAGGTTTTGAAGTCGTATGTGTCACATTGGCCAGTTCA 704
Query 707 ACGTTGGCAAGAGTATGAGCCTCTCTTAAGTTACTGCCGCGATAACGGAGTTAAACTCAT 766
|||||||||||||||||||||||| ||||||||||| ||| | |||| ||||||||||||
Sbjct 705 ACGTTGGCAAGAGTATGAGCCTCTGTTAAGTTACTGTCGCCAAAACGCAGTTAAACTCAT 764
Query 767 TGCTTGTGGCACTCCGCTCAAGGTTTTAAGAACTGTCCAAGCTGAGGGTATCCGTGGTCT 826
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 765 TGCTTGCGGCACTCCGCTCAAGGTTTTAAGAACTGTCCAAGCTGAGGGTATCCGTGGCCT 824
Query 827 ATCAGAGTCTGAGCGTAAATTATACACTCCTCCTGCGGGTTCAGGGTTTATCTCAGGGTT 886
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 ATCAGATTCTGAGCGTAAATTATACACTCCTCCTGCGGGTTCAGGGTTTATCTCAGGGTT 884
Query 887 TACTTCCTTCTCACGTAGTTCTTCACTCAATATGAATCCACTCACACAGATTGTTCCATT 946
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 885 TACTTCCTTCTCACGTAGTTCTTCACTCAATATGAATCCCCTCACACAGATTGTTCCATT 944
Query 947 TGGACCGAGTTCTTATTTGTCGGCACAAGCTAGAGTTGTTGAAGACCATACAATGTCTCA 1006
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 945 TGGACCGAGTTCTTATTTGTCGGCGCAAGCTAGAGTTGTTGAAGACCATACTATGTCACA 1004
Query 1007 AGTTATTGTACAAGCAGTTGCAGATGGAGGTGGAACTGGTATGCTGGTAGTGGTGACAGG 1066
||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1005 AGTTATTTTACAAGCAGTTGCAGATGGAGGTGGAACTGGTCTGCTTTTAGTGGTGACAGG 1064
Query 1067 GGCAAACCATGTTGAGTATGGGTCAAGGGGAACAGGATTGCCGGCAAGGATCTCTAGGAA 1126
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1065 GGCAAACCATGTTGAGTATGGGTCAAGAGGAACAGGCTTGCCTGCAAGGATCTCTAGGAA 1124
Query 1127 GATTCCGAAGAAAAGTCAACTTGTTGTGTTACTTGATCCTGAAAGACAGTTTTTGCGGAA 1186
||||| |||||||||||||||||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1125 AATTCCCAAGAAAAGTCAACTTGTTGTATTACTTGATCCTGAAAGGCAGTTCTTGCGGAA 1184
Query 1187 AGAGGGTGAATCTCCAGTTGCTGATTTCTTGTGGTATTCTGCGGCCAGACCCTGCAGCAG 1246
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1185 AGAGGGTGAATCTCCAGTTGCTGATTTCTTGTGGTATTCTGTGGCCAGACCCTGCAGCAG 1244
Query 1247 AAACTGCTTTGACCGAGCAGAAATCGCTCGGGTAATGAATGCGGCTGGTAGGAGACGAGA 1306
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1245 AAACTGCTTTGACCGAGCAGAAATCGCTCGTGTAATGAATGCAGCTGGTAGGAGACGAGA 1304
Query 1307 TGCCCTTCCCCAAGACATTCAAAAAGGATTAGACCTTGGTCTGGTGTCACCTGAGATTCT 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 TGCCCTTCCCCAAGACATTCAAAAAGGATTAGACCTTGGTCTGGTGTCACCTGAGATTCT 1364
Query 1367 GCAGAATTTCTTTGATTTGGAGCAATATCCTCTTATTTCAGAGCTTACACAACGGTTCCA 1426
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1365 GCAGAATTTCTTTGATTTGGAGCAATATCCTCTTATTTCAGAGTTTACAAAACGGTTCCA 1424
Query 1427 GGGATTCCGAGAAAGGTTGTTGGCAGATCCCAAATTCTTGAATAGATTAGCTATTGAAGA 1486
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1425 GGGTTTCCGAGAAAGGTTGTTGGCAGACCCCAAATTCTTGAATAGATTAGCTATTGAAGA 1484
Query 1487 AGCTATATCAATAACAACAACACTTGTAGCTCAATATGAGAAGCGGAAAGAAAATTTCTT 1546
||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1485 AGCTATATCGATAACAACGACACTTGTAGCTCAATATGAGAAGCGGAAAGAAAACTTCTT 1544
Query 1547 TGAAGAACTCGACTATGTGATCACTGATAGCGTAAGAGCATCAGTTGTTGATTTTTTCAC 1606
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1545 TGAAGAACTCGACTATGTTATTACTGATAGCGTAAGAGCATCAGTTGTTGATTTTTTCAC 1604
Query 1607 AGTTTGGCTCCCTGCACCAACCTTGTCTTTTATCTCATATGCTGATGAGACAATTGGGCC 1666
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1605 AGTTTGGCTGCCTGCACCAACCTTGTCTTTTATCTCATACGCTGATGAGACAATTGGACC 1664
Query 1667 AAACAGCATAGATGCCTTAAGAGGCCTCCTAGGGTCCATACCTGACAATGCATTTCAAAA 1726
|||||||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||
Sbjct 1665 AAACAGCATAGATGCCCTAAAAGACCTCCTAGGATCCATACCTGACAATGCATTTCAAAA 1724
Query 1727 AAGTCTAGGTGGACAAGAGTGGACTCTGAGTCTTAGGATTGCTTCAGTTATTATCGGTGG 1786
|||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1725 AAGTCTTGGTGGACAAGAGTGGACTCTGAATCTTAGGATTGCTTCAGTTATTGTCGGTGG 1784
Query 1787 CTTGAAGCTTGCTGGTGTTGGAGTTGTTTCCAGTTTTGCAGCTGTGGGATCTTCAAATGC 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1785 CTTGAAGCTTGCTGGTGTTGGAGTTGTTTCCAGTTTTGCAGCTGTGGGATCTTCAAATGC 1844
Query 1847 TTTGTATGCAATACGAAAATTCATTAAACCAGAGTTGGGTGTTGGTGAGCAAGCAAAGAG 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845 TTTGTATGCAATACGAAAATTCATTAAACCAGAGTTGGGTGTTGGTGAGCAAGCAAAGAG 1904
Query 1907 GTCTCCTATGCTGAAGACGGCCCTTGTGTATGGAGGTTATCTGGGAACATCTTCGAATAT 1966
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1905 GTCTCCTATGCTGAAGACGGCCCTTGTGTATGGAGGTTATCTGGGAACATCTTCAAATAT 1964
Query 1967 CCGTTATCAGATAATTGCTGGGTTAATAGAGCATCGCATTTCTGACGAGCTTTCTTCTCA 2026
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1965 CCGTTATCAGATAATCGCTGGGTTAATAGAGCATCGCATTTCTGACGAGCTTTCTTCTCA 2024
Query 2027 ACCTCTACTTGTAAACATGATTTCATTTGTTGTTCGAGTAGCTAACTCCTACTTTGGAAC 2086
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2025 ACCTCTACTTGTAAACATGATTTCATTTGTTGTTCGAGTAGCTAACTCCTACTTTGGAAC 2084
Query 2087 TCAGCAATGGATTGATCTTGCGCGCTCTACGGGTCTGCAAACTCAGAAAAGTGTCACAAC 2146
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 2085 TCAGCAATGGATTGATCTTGCGCGCTCTACGGGTCTGCAGACTCAGAAAAGTGTCGCAAC 2144
Query 2147 TTCCAACCAAATCCCCGAGGTTGCGAGCCAATCCACAGTGGAATACAGTACAACTGAAGA 2206
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 2145 TTCCAACCAAATCCCCGAGGTTGGGAGCCAATCTACAGTGGAATACAGTACAACTGAAGA 2204
Query 2207 GGCAAGTATGGATGATCTTAAGAATCAATGAGATTTATGCGGCTATGTGACTAGGTACCA 2266
||||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||
Sbjct 2205 GGCAAGTATCGATGATCTCAAGAATCAATGATATTTATGCGGCTATGTGTCTAGGTACCA 2264
Query 2267 ATTG-TATATGTTTATAAAAGCTTTT-GATCGTATTGGAGGGAAAGATATATTCATTTGA 2324
| || ||||||||||||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 2265 ACTGGTATATGTTTATAAAAGCTTTTTGGTCGTATTGGAGGGAAATATATATTCATTTGA 2324
Query 2325 GTTGTATTTTTGTATCTTAGCTTACGGGAAACAATGATTCGTGAATAAAATTTCTTCAAT 2384
|||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||
Sbjct 2325 GTTGTATTTT-GTATCTTAGCTTATGGGAAATAATGATTCGTGAATAAAATCTCTTCAAT 2383
Query 2385 TAGTCATGTTGGTTTGCCATATTTGCACAT 2414
||||||||||| ||||| ||| ||||||||
Sbjct 2384 TAGTCATGTTGATTTGCAATAATTGCACAT 2413
> Ahg486055 jgi|Araly1|486055|fgenesh2_kg.5__2047__AT3G56140.1
Length=2448
Score = 1940 bits (1050), Expect = 0.0
Identities = 1620/1891 (86%), Gaps = 55/1891 (3%)
Strand=Plus/Plus
Query 376 AGGAAGAGGCGATAACTTCTAGAATCTATGACGCGTCTGTG-C-TTGGTGAGCCGATGGC 433
|||||||| | ||||| || ||||||||||||||| | | | | ||||||||||||||||
Sbjct 416 AGGAAGAGACTATAACCTCGAGAATCTATGACGCGAC-G-GCCATTGGTGAGCCGATGGC 473
Query 434 TGTTGGG-AAAGATAAGAAG-AGAGTGTGGGAGAAGCT-ATTGAATGCGAGGA-TTGTCT 489
| |||| |||||||||||| || |||||||||||||| | ||||||| | || |||| |
Sbjct 474 T-ATGGGAAAAGATAAGAAGAAG-GTGTGGGAGAAGCTGA-TGAATGCCA-GAGTTGTGT 529
Query 490 ATCTCGGAGAAGCAGAACAAGTGCCTA-CAAGAGACGACAAGGTTCTCGAGCTCGAAATC 548
| ||||| || || || ||||| |||| ||| ||||||||| | || || |||||||||
Sbjct 530 ACCTCGGCGAGGCGGAGCAAGTTCCTACCAA-AGACGACAAAGAGCTTGAACTCGAAATC 588
Query 549 GTGAGGAATTTGAGGAAGCGATGTATTGAGAGCGATCGTCAGTTATCTTTAGCATTGGAA 608
|| || || |||||||| |||| |||||| ||| ||||| | ||| ||||| | |||
Sbjct 589 GTTAGAAACCTGAGGAAGAGATGCGTTGAGAACGAGCGTCAAATCTCTGTAGCACTAGAA 648
Query 609 GCATTTCCTCTTGATTTGCAGGAACAG-TTAAACCAATACATGGACAAGAGGATGGATGG 667
||||| ||||||||||||||||| ||| || || ||||||||||| | ||||||||| ||
Sbjct 649 GCATTCCCTCTTGATTTGCAGGACCAGCTT-AATCAATACATGGATAGGAGGATGGACGG 707
Query 668 AGAGGTATTGAAGTCGTATGT-ATCACATTGGCCAGTC-CAACGTTGGCAAGAGTATGAG 725
|||| ||||||||| ||||| | |||||||||| | | |||||||||||||| ||||||
Sbjct 708 AGAGACATTGAAGTCTTATGTGA-CACATTGGCCTG-CTCAACGTTGGCAAGAATATGAG 765
Query 726 CCTCTCTTAAGTTACTGCCGCGATAACGGAGTTAAACTCATTGCTTGTGGCACTCCGCTC 785
||||| ||||||||||| ||||||||| |||| ||| ||||||||||||||||| |||
Sbjct 766 CCTCTTTTAAGTTACTGTCGCGATAACTCTGTTAGACTAATTGCTTGTGGCACTCCTCTC 825
Query 786 AAGGTTTTAAGAACTGTCCAAGCTGAGGGTATCCGTGGTCTATCAGAGTCTGAGCGTAAA 845
||||||||||||||||||||||| || |||||||||||||| ||| | ||||||||||||
Sbjct 826 AAGGTTTTAAGAACTGTCCAAGCAGAAGGTATCCGTGGTCTTTCAAAATCTGAGCGTAAA 885
Query 846 TTATACACTCCTCCTGCGGGTTCAGGGTTTATCTCAGGGTTTACTTCCTTCTCACGTAGT 905
||||||||||| ||||| ||||| |||||||| ||||| ||| ||||||||||||||||
Sbjct 886 TTATACACTCCCCCTGCTGGTTCTGGGTTTATTTCAGGATTTTCTTCCTTCTCACGTAGA 945
Query 906 TCTTCACTCAATATGAATCCACTC-ACACAGATTGTTCCATTTGGACCGAGTTCTTATTT 964
||| || | |||||| | | | | |||||||||||||| |||||||| |||||||||||
Sbjct 946 TCTACATTTGATATGAGT-CTCCCAACACAGATTGTTCCGTTTGGACCAAGTTCTTATTT 1004
Query 965 GTCGGCACAAGCTAGAGTTGTTGAAGACCATACAATGTCTCAAGTTATTGTACAAGCAGT 1024
||||||||| || |||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1005 GTCGGCACAGGCAAGAGTTGTTGAAGACCATACAATGTCACAAGTTATTTTACAAGCAGT 1064
Query 1025 TGCAGATGGAGGTGGAACTGGTATGCTGGTAGTGGTGACAGGGGCAAACCATGTTGAGTA 1084
||||||||||| || | |||| | ||| ||||||| |||||||| | |||||||||||
Sbjct 1065 AGCAGATGGAGGGGGTAGTGGTCTACTGTTAGTGGTAACAGGGGCGAGTCATGTTGAGTA 1124
Query 1085 TGGGTCAAGGGGAACAGGATTGCCGGCAAGGATCTCTAGGAAGATTCCGAAGAAAAGTCA 1144
||| ||||| |||||||| ||||| ||||||||||| |||||| |||| ||||||| ||
Sbjct 1125 TGGCTCAAGAGGAACAGGTTTGCCAGCAAGGATCTCAAGGAAGTTTCCAAAGAAAAACCA 1184
Query 1145 ACTTGTTGTGTTACTTGATCCTGAAAGACAGTTTTTGCGGAA-AGAGGGTGAATCTCCAG 1203
||||||||| |||||||||||||||||||||| |||| ||| |||||| ||| ||||||
Sbjct 1185 ACTTGTTGTATTACTTGATCCTGAAAGACAGTACTTGC-GAAGAGAGGGCGAAACTCCAG 1243
Query 1204 TTGCTGATTTCTTGTGGTATTCTGCGGCCAGACCCTGCAGCAGAAACTGCTTTGACCGAG 1263
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1244 TTGCTGATTTCTTGTGGTATTCTGCAGCAAGACCCTGCAGTAGAAACTGCTTTGACCGAG 1303
Query 1264 CAGAAATCGCTCGGGTAATGAATGCGGCTGGTAGGAGACGAGATGCCCTTCC-CCAAGAC 1322
|||| || ||||| ||||||||||| ||||| ||||| |||||||||||||| || ||
Sbjct 1304 CAGAGATTGCTCGAGTAATGAATGCAGCTGGCAGGAGGCGAGATGCCCTTCCACC-GGAT 1362
Query 1323 ATTCAAAAAGGATTAGACCTTGGTCTGGTGTCACCTGAGATTCTGCAGAATTTCTTTGAT 1382
|||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1363 ATTCAAAATGGATTAGACCTTGGTCTGGTGTCACCTGAGGTTCTGCAGAATCTCTTTGAT 1422
Query 1383 TTGGAGCAATATCCTCTTATTTCAGAGCTTACACAACGGTTCCAGGGATTCCGAGAAAGG 1442
|||||||| |||||||||||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct 1423 TTGGAGCAGTATCCTCTTATTTCTGAGCTTACTCAGCGGTTTCAGGGTTTCCGAGAAAGG 1482
Query 1443 TTGTTGGCAGATCCCAAATTCTTGAATAGATTAGCTATTGAAGAAGCTATATCAATAACA 1502
|||||||||||||| |||||| |||||||||||||||| ||||| |||||||||||||||
Sbjct 1483 TTGTTGGCAGATCCAAAATTCCTGAATAGATTAGCTATCGAAGAGGCTATATCAATAACA 1542
Query 1503 ACAACACTT-GTAGCTCAATATGAGAAGCGGAAAGAAAATTTCTTTGAAGAACTCGACTA 1561
|| ||| || |||| |||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 1543 ACTACA-TTAATAGCACAATATGAGAAGCGGAGAGAGAATTTCTTTGAAGAAATCGACTA 1601
Query 1562 TGTGATCACTGATAGC-GTAAGAGCATCAGTTGTTGATTTTTTCACAGTTTGGCTCCCTG 1620
||| || ||||||| | || |||| |||||| ||||||||||||||||||||||| ||||
Sbjct 1602 TGTTATAACTGATA-CAGTGAGAGGATCAGTCGTTGATTTTTTCACAGTTTGGCTTCCTG 1660
Query 1621 CACCAACCTTGTCTTTTATCTCATATGCTGATGAGACAATTGGGCCAAACAGCATAGATG 1680
||||||| ||||||||| | ||||||||||||||||| | ||| ||| |||||||||| |
Sbjct 1661 CACCAACTTTGTCTTTTCTTTCATATGCTGATGAGACCACTGGACCAGACAGCATAGACG 1720
Query 1681 CCTTAAGAGGCCTCCTAGGGTCCATACCTGACAATGCATTTCAAAAAAGTCTAGGTGGAC 1740
|| | |||||||||||||| ||||||||||| || ||||||||||||||||| | ||||
Sbjct 1721 CCCTGAGAGGCCTCCTAGGATCCATACCTGATAACGCATTTCAAAAAAGTCTTGCTGGA- 1779
Query 1741 A-AGAGTGG-ACTCTGAGTCTTAGGATTGCTTCAGTTATTATCGGTGGCTTGAAGCTTGC 1798
| ||||||| || |||| |||||| ||||||||||||||| | |||||||||||||||||
Sbjct 1780 AGAGAGTGGAAC-CTGAATCTTAGAATTGCTTCAGTTATTGTTGGTGGCTTGAAGCTTGC 1838
Query 1799 TGGTGTTGGAGTTGTTTCCAGTTTTGCAGCTGTGGGATCTTCAAATGCTTTGTATGCAAT 1858
||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||| | |
Sbjct 1839 TGGTGTTGGAGTTGTTTCCAGTTTTGCAGCTGTGGGAGCTTCAAATGCATTGAATGTAGT 1898
Query 1859 ACGAAAATTCATTAAACCAGAGTTGGGTGTTGGTGAGCAAGCAAAGAGGTCTCCTATGCT 1918
|||||| |||||| ||| ||||||| |||| |||| || | |||||||||||| | ||
Sbjct 1899 ACGAAAGGTCATTAGACCCGAGTTGGTTGTTTCTGAGAAACCTAAGAGGTCTCCTCTTCT 1958
Query 1919 GAAGACGGCCCTTGTGTATGGAGGTTATCTGGGAACATCTTCGAATATCCGTTATCAGAT 1978
||||||||| | || |||||||||| ||||||||||||| | ||| | ||||| |||||
Sbjct 1959 GAAGACGGCAATGGTTTATGGAGGTTTTCTGGGAACATCTGCAAATCTTCGTTACCAGAT 2018
Query 1979 AATTGCTGGG-TTAATAGAGCATCGCATTTCTGACGAGCTTTCTTCTCAACCTCTACTTG 2037
|||||| ||| ||||||||||||||| ||||||| |||||||| ||||||||||||||||
Sbjct 2019 AATTGC-GGGATTAATAGAGCATCGCCTTTCTGATGAGCTTTCCTCTCAACCTCTACTTG 2077
Query 2038 TAAA--CATGATTTCATTTGTTGTTCGAGTAGC-TAA-CTCCTACTTTGGAACTCAGCAA 2093
|||| | | |||||||||||||| | || | | ||| ||| || |||||||| ||||||
Sbjct 2078 TAAATGC-T-ATTTCATTTGTTGT-C-AGGACCCTAAACTCATATTTTGGAACGCAGCAA 2133
Query 2094 TGGATTGATCTTGCGCGCTCTACGGGTCTGCAAACTCAGAAAAGTGTCACAACTTCCAAC 2153
||||| |||||||| |||||||| |||||||||||||||||||| || || | || ||
Sbjct 2134 TGGATCGATCTTGCACGCTCTACAGGTCTGCAAACTCAGAAAAGCATCCCAGCCTCTAAA 2193
Query 2154 CAAATCCCCGAGG-TT-GCGA-GCCAATCCACAGTGGAATAC-AGTAC-A--ACTGAAGA 2206
|||| || |||| || | || | |||| || ||||||| | | ||| | ||||||||
Sbjct 2194 GAAATTCCAGAGGCTTTG-GAAG--AATCGACGGTGGAATGCGA-TACTACTACTGAAGA 2249
Query 2207 GGCAAGTATGGATGATCTTAAGAATCAATGA 2237
|| |||||| || | || || |||||||||
Sbjct 2250 GGAAAGTATCGACAAGCTCAATAATCAATGA 2280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91378497755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5