BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40410.2
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483096 jgi|Araly1|483096|fgenesh2_kg.4__2156__AT2G40410.2 1620 0.0
Ahg486058 jgi|Araly1|486058|fgenesh2_kg.5__2050__AT3G56170.1 728 0.0
> Ahg483096 jgi|Araly1|483096|fgenesh2_kg.4__2156__AT2G40410.2
Length=1082
Score = 1620 bits (877), Expect = 0.0
Identities = 1032/1101 (94%), Gaps = 33/1101 (3%)
Strand=Plus/Plus
Query 23 TGTCCTTCCTCTTTAGGATTCTCCTCTGGGCTCTGGTAAGGTATTA-GAAAGATCAAAAC 81
|||||||||||||| ||| | | |||| |||||| |||||||| |||||||| ||||
Sbjct 1 TGTCCTTCCTCTTTGGGA-T-T-CTCT----TCTGGT-AGGTATTAGGAAAGATCGAAAC 52
Query 82 TTTTTGGATTCCCTGAAATTGGGTGAAAGATGGGTAACGCTCTTACGTTTCTCTACGGAA 141
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 53 TTTTTGGATTCCC----------TGAAAGATGGGTAACGCTCTTACGTTTCTCTACGGAA 102
Query 142 AATGCTGCAAACCCACAACAACCGATGACTCTCTTGGTCCTCACGGCGTCTCCGCCGCCA 201
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 103 AATGCTGCAAACCCACAACGACCGACGACTCTCTCGGTCCTCACGGCGTCTCCGCCGCCA 162
Query 202 CCGTCGGTGTTTCAGCTCTCGCTCACGATCTCTTCAACTTCGAGATCACTTCCCAGGTTC 261
|||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 163 CCGTTGGTGTTTCAGCTCTCGCTCACGACCTTTTCAACTTCGAGATCACTTCCCAGGTTC 222
Query 262 CTGAAGGGCTTGGGAGGTATGTTCAGTCATCTAGAAAAGCTCAAGCAAACTGGTATAGAA 321
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 223 CTGAAGGGCTTGGGAGGTATGTTCAGTCGTCTAGAAAAGCTCAAGCAAACTGGTATCGAA 282
Query 322 AAATACTTGAGGCATGGAAGCAAGCAAAACCTCCACCGCAGACAGCTGAGGAAGCTTCTA 381
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 283 AAATACTTGAGGCATGGAAGCAAGCAAAACCTCCACCACAGACAGCAGAGGAAGCTTCTA 342
Query 382 GGCTTGTCACTGATATCTTAAAAAGGAATCAGAAAGCTGATGTTGAGGGGCTTTTGTCTT 441
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 343 GGCTTGTCACTGATATCTTAAAAAGGAATCAGAAAGCTGATGTTGAGGGACTTTTGTCTT 402
Query 442 TCTATGGACTCCCTTTGTCTCATACTCTAGTTGAAGTCACTGTTGAAGCTCCTGTG---T 498
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 403 TCTATGGACTCCCTTTGTCTCATACTCTAGTTGAAGTCTCTGTTGAAGCTCCTGTGTCTT 462
Query 499 CTTTGCCTGAAGGGATTCTTTTCGAATTTCAAACACTTCCGGTGGATCCAAAAGCTGTGG 558
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 CTTTGCCTGAAGGGGTTCTTTTCGAATTTCAAACACTTCCGGTGGATCCAAAAGCTGTGG 522
Query 559 CAGATGGAGACACCATCACAGTGTATGTCAGTACTTCAGAGCCGGTTGTGTCATCTTCTG 618
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 523 CAGATGGAGACACCATCACAGTGTATGTCAGTACTTCAGAGCCGGTAGTGTCATCTTATG 582
Query 619 TTCCAAGGGAAGTCAATCTTGCAGCTGTTCAAAGAGCAAAAGCACGTGAGAAGAGAAATT 678
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 583 TTCCAAGGGAAGTCAATCTTGCAGCGGTTCAAAGAGCAAAAGCACGTGAGAAGAGGAATT 642
Query 679 ATCCAAAAGCTGACGAACTTCACCAAAAGATCATTGATTCTGGTTACAGGGTACTAAATA 738
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 643 ACCCAAAAGCAGACGAACTTCACCAAAAGATCATTGATTCTGGTTACAGGGTACTAACTA 702
Query 739 TTGAGAATGAGGAAGTTCTTGCTCGGAAGTTCAGAATTAGACTAAGGGGAATAGATGCAC 798
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 703 TTGAGAATGAGGAAGTGCTTGCTCGCAAATTCAGAATTAGACTAAGGGGAATAGATGCAC 762
Query 799 CAGAGAGCCAAATGCCGTTTGGGAAAGAGGCACAAGAAGGGCTC-TTAAAGATTGTTGGG 857
|||||||||||||||| |||||||||||||||||| |||||||| |||| |||||||||
Sbjct 763 CAGAGAGCCAAATGCCATTTGGGAAAGAGGCACAACAAGGGCTCCTTAA-GATTGTTGGA 821
Query 858 CGGAAAAGCTTGAAGGTGTTAGTTTATGGAGAAGATCAATATGGGCGATGCGTAGGTGAT 917
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 822 AGGAAAAGCTTGAAAGTGTTAGTTTATGGAGAAGATCAATATGGGCGATGCGTAGCTGAT 881
Query 918 TTATACTGCAATGGGATCTTTGTCCAGGAGGCAATGTTAAAGAAAGGGCTTGCTTGGCAT 977
||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||
Sbjct 882 TTATACTGCAATGGGATTTTTGTCCAGGAGGCAATGCTAAAGAAAGGGCTTGCATGGCAT 941
Query 978 TACTTAGCTTATGACAAGCGCCCGGTTCTCGCAAAG------T---GGGAAAAGGAGGCA 1028
|||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 942 TACTTAGCTTATGACAAGCGCCCGGTTCTCGCAAAGGCAAGATTATGGGAAAAGGAGGCA 1001
Query 1029 AGGCAGAAGCGTATTGGCTTGTGGGCTTCTTCAAATCCAGAGAAGCCATGGGACTGGAGA 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 AGGCAGAAGCGTATTGGCTTGTGGGCTTCTTCAAATCCAGAGAAGCCATGGGACTGGAGA 1061
Query 1089 AAGAATAATAGGCGGGAATAG 1109
|||||||||||||| || |||
Sbjct 1062 AAGAATAATAGGCGTGAGTAG 1082
> Ahg486058 jgi|Araly1|486058|fgenesh2_kg.5__2050__AT3G56170.1
Length=1146
Score = 728 bits (394), Expect = 0.0
Identities = 757/930 (81%), Gaps = 34/930 (4%)
Strand=Plus/Plus
Query 181 CTCACGGCGTCTCCGCCGCCACCGTCGGTGTTTCAGCTCTCGCTCACGATCTCTTCAACT 240
||||||||||||| ||| | ||| ||| || |||||||| ||| |||||||| ||||
Sbjct 59 CTCACGGCGTCTCTGCCTCTTCCGGCGGCGTCTCAGCTCTTTCTCGTGATCTCTTAAACT 118
Query 241 TCGAGATCACTTCCCAGGTTCCTGAAG-GGCTTGGGAGGTATGTTCAGTCAT-CTAGAAA 298
|||||| |||||| |||||||| | || ||||||||| || ||| ||| | | | |||
Sbjct 119 TCGAGACCACTTCTCAGGTTCC-GGAGAAGCTTGGGAGTTACGTTGTGTCTTCCCA-AAA 176
Query 299 AGCTCAAGCAAACTGGTATAGAAAAATACTTGAGGCATGGAAGCAAGCAAAACCTCCA-C 357
|||||||||||||||||| |||||||||||||||||||||||||||| || |||| | |
Sbjct 177 GGCTCAAGCAAACTGGTATCGAAAAATACTTGAGGCATGGAAGCAAGCTAAGCCTC-AGC 235
Query 358 CGCAGACAGCTGAGGAAGCTTCTAGGCTTGTCA-CT-GATATCTTAAA-AAGGAATC-AG 413
| | || |||||||||| ||||||||||| | | || ||| ||| || | || |
Sbjct 236 CTAAAACTCCTGAGGAAGCCTCTAGGCTTGTTATCGCGAC-TCT-AAAGAACCA-TCTA- 291
Query 414 AAAGCTGATGTTGAGGGGCTTTTGTCTTTCTATGGACTCCCTTTGTCTCATACTCTAGTT 473
||||| ||||||||||| |||||||||||||||||||| |||| |||| | ||| |||
Sbjct 292 AAAGCAGATGTTGAGGGACTTTTGTCTTTCTATGGACTACCTTCACCTCACAATCTCGTT 351
Query 474 GAAGTCACTGTTGAAGCTCCTGTGTCTTTGCCTGAAGG-GATTCT-TTTCGAATTTCAAA 531
|| ||| || ||| ||||||||||||| ||| |||| | ||| ||| || || |||
Sbjct 352 GAGGTCCCTACGGAATCTCCTGTGTCTTTACCTAAAGGAG-TTCGGTTT-GAGCTTAAAA 409
Query 532 CACTTCCGGTGGATCCAAAAGCTGTGGCAGATGGAGACACCATCACAGTGTATGTCAGTA 591
| |||||||||||| ||||| |||||||||||||||| ||| | || |||||||| ||||
Sbjct 410 CGCTTCCGGTGGATACAAAATCTGTGGCAGATGGAGATACCGTTACTGTGTATGTTAGTA 469
Query 592 -CTTCAGAGCCGGTTGTGTCATCTTCTGTTCC-AAGGGAAGTCAATCTTGCAGCTGTTCA 649
| ||| ||| |||||||||||||| |||| |||| |||||| ||||||||| ||| |
Sbjct 470 GCAA-AGACCCGCTTGTGTCATCTTCTCTTCCTAAGG-AAGTCAGTCTTGCAGCAGTTAA 527
Query 650 AAGAGCAAAAGCACGTGAGAAGA-GAAATTATCCAAAAGCTGACGAACTTCACCAAAAG- 707
|||||| ||||| |||||||||| ||| |||| | |||| || | ||||||| || |
Sbjct 528 AAGAGCCAAAGCGCGTGAGAAGAAGAA-TTATACTGAAGCAGATGCACTTCAC-AAGACT 585
Query 708 ATCATTGATTCTGGTTACAGGGT-ACTAAATATTGAGAATGAGGAAGTTCTTGCTCGGAA 766
||||| | ||||||||||||| | | ||| | || ||||||||||||| |||||| ||
Sbjct 586 ATCATAGCTTCTGGTTACAGGATGA-TAAGTTTTCAGAATGAGGAAGTGCTTGCTAAAAA 644
Query 767 GTTCAGAATTAGACTAAGGGGAATAGATGCACCAGAGAGCCAAATGCCGTTTGGGAAAGA 826
|||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||| |||||
Sbjct 645 GTTCAGAATTAGACTAAGCGGAATAGATTCACCGGAGAGCAAAATGCCGTATGGAAAAGA 704
Query 827 GGCACAAGAAGGGCT-CTTAAAGATTGTTGG-GCGGAAAAGCTTGAAGGTGTTAGTTTAT 884
||| || || | ||| || || ||| |||| | ||||| |||||||||||||||| |||
Sbjct 705 GGCGCATGATGAGCTACTCAA-GATGGTTGAAG-GGAAATGCTTGAAGGTGTTAGTATAT 762
Query 885 GGAGAAGATCAATATGGGCGATGCGTAGGTGATTTATACTGCAATGGGATCTTTGTCCAG 944
||| |||| ||||| |||| ||||| ||| ||||||||||||| | ||||| |||
Sbjct 763 ACAGAGGATCGTTATGGAAGATGTGTAGGAGATATATACTGCAATGGAAAATTTGTACAG 822
Query 945 GAGGCAATGTTAAAGAAAGGGCTTGCTTGGCATTACT-TAGCTTATGACAAGCGCCCGGT 1003
|| | |||| |||||||||| |||||||||||||| | ||||||| |||||||| | |
Sbjct 823 GAAGTAATGCTAAAGAAAGGTCTTGCTTGGCATTA-TGTAGCTTACGACAAGCGTGCAGA 881
Query 1004 TCTCGCAAAGTGGGAAAAGGAGGCAAGGCAGAAGCGTATTGGCTTGTGGGCTTCTTCAAA 1063
||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||| ||
Sbjct 882 GCTCGCAAAGTGGGAAAATGAGGCTAGGCAAAAGCGTATTGGCTTGTGGGCATCTTCTAA 941
Query 1064 TCCAGAGAAGCCATGGGACTGGAGAAAGAA 1093
|||||||||||||||||| |||||||||||
Sbjct 942 TCCAGAGAAGCCATGGGAGTGGAGAAAGAA 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5