BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40420.1
Length=1632
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483098 jgi|Araly1|483098|fgenesh2_kg.4__2158__AT2G40420.1 2370 0.0
Ahg486062 jgi|Araly1|486062|fgenesh2_kg.5__2054__AT3G56200.1 811 0.0
> Ahg483098 jgi|Araly1|483098|fgenesh2_kg.4__2158__AT2G40420.1
Length=1517
Score = 2370 bits (1283), Expect = 0.0
Identities = 1450/1529 (95%), Gaps = 17/1529 (1%)
Strand=Plus/Plus
Query 14 CATTACCATTTCCTCTTCACCGGGGAAAATTCTGTTAGTTTCTTTCTCCGGTAGT-TGAA 72
|||||||||||||||||| ||||||||||||| | | | |||||||||||| | ||
Sbjct 1 CATTACCATTTCCTCTTCGCCGGGGAAAATTC---T-G---C-TTCTCCGGTAGTAT-AA 51
Query 73 AGAAAATGTCTCCTGCGATCAAAGCACCGCTCTTACCAAACCAAGAGCCTTCATCATCAT 132
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 52 AGAAAATGTCTCCTGCGATTAAAGCTCCGCTCTTACCAAACCAAGAGCCTTCATCATCAT 111
Query 133 CATCGGAGAACCATGGATCATTCGCCGGAGCTGTGTTTAACATCTCGACAAGCATCGTCG 192
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 112 CATCGGAGAACCATGGATCATTCGCCGGAGCTGTGTTTAACATCTCAACAAGCATAGTCG 171
Query 193 GAGCTGGAATTATGGCGATTCCGGCGGCTTTCAAAGTCCTAGGTGTAATCCCATCTCTAT 252
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 172 GAGCTGGAATTATGGCGATTCCGGCGGCTTTCAAAGTTCTGGGTGTAATCCCATCTCTCT 231
Query 253 CGATAATCGTAATCATAGCTTGGCTCTCCAATGTATCAGCTGGGTTTTTAATGAAATCCA 312
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 232 CGATAATCGTTATCATAGCTTGGCTATCAAATGTATCAGCTGGGTTTTTAATGAAATCCA 291
Query 313 GTCTCGCCGGAGAATCAACAACTTACGCCGGCGTGATGAAGGAATCGTTCGGAAAATCTG 372
||||||||||||||||||| |||||||||||||| ||||| |||||||| ||||||||||
Sbjct 292 GTCTCGCCGGAGAATCAACGACTTACGCCGGCGTAATGAAAGAATCGTTTGGAAAATCTG 351
Query 373 GTGCCGTTGCTGTTACGGTTGTTACAATGGTTGTGACTTTTGGGTCTATGATTATTTTCT 432
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GTGCCGTCGCTGTTACGATTGTTACAATGGTTGTGACTTTTGGGTCTATGATTATTTTCT 411
Query 433 CGATTATCATTGGTGATGTTATTTCGGGTAATGAGAAAGATGGAATCATACATTTAGGTC 492
||||||| || ||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 412 CGATTATTATAGGTGATGTTCTTTCTGGTAATGAAAAAGATGGAATCATACATTTAGGTC 471
Query 493 TTCTTCAAGAATGGTTTGGTTCTCATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TTCTTCAAGAATGGTTTGGTTCTCATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCA 531
Query 553 TCTTTGTCTTCCTCTTCCTTCCTTTAGTCTTATGCAGACGTGTAGAAAGATTGGCATTTA 612
| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 532 TTTTTGTCTTCCTCTTGCTTCCTTTAGTCTTATGCAGACGTGTAGAAAGATTAGCATTAA 591
Query 613 GTTCTGCAATTTCGTTTCTGCTTGCGTTACTCTTTGTTGTCATAAGCTCGGTGTTAGCGA 672
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 592 GTTCTGCAATTTCGTTTCTGCTTGCGTTACTCTTTGTTGTTATAAGCTCGGTGTTAGCGA 651
Query 673 TTATTGCTCTCGTGCAAGGGAAGACAAAGCCTCCGAGACTCTTCCCTGAACTCAATGATG 732
||||||| || || |||||||| |||||| |||||||||||||||| |||||||| ||||
Sbjct 652 TTATTGCACTAGTCCAAGGGAAAACAAAGACTCCGAGACTCTTCCCAGAACTCAACGATG 711
Query 733 GTGGATTATCGTTTTTCAGTCTCTTCACTGCTTCCCCTGTCATTGTAACAGCCTTCACCT 792
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 712 GTGGATTATCGTTTTTCAGTCTCTTCACTGCTTCCCCTGTCATTGTAACAGCTTTCACAT 771
Query 793 TTCATTTCAATGTCCATCCAGTAGCATTCGAACTCAAAGATCCATTAAATGTGCTTTCAG 852
|||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 772 TTCATTTCAATGTCCATCCAGTGGCATTTGAACTCAAAGATCCATTAGATGTGCTTTCAG 831
Query 853 CAACAAGGATCTCTGTGATTCTGTGTGCTACGATCTACTCAGCTACTGGTCTCTTTTGTT 912
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 832 CAACAAGGATCTCTGTGATTCTGTGTGCTGCGATCTACTCAGCCACTGGTCTCTTTTGTT 891
Query 913 ACCTTCTGTTTGGGGATTCCACTATGACAGATGTTCTAATGAACTTTGATCAAAGCACCA 972
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 892 ACCTTCTGTTTGGGGATTCCACTATGACAGATGTTTTAATGAACTTTGATCAAAGCACCA 951
Query 973 GTTCTTCGGTTGGTTCATTACTAAATGATATTGTTAGACTCAGCTACGCGATTCACCTCA 1032
||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 952 GTTCTTCCATTGGTTCATTACTAAATGACATTGTTAGACTCAGCTACGCGATTCACCTCA 1011
Query 1033 TGCTCGTGTTTCCTCTGCTCAACTTCTCGCTTAGAGCCAACCTCGACGAACTCTTGTTCC 1092
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TGCTTGTGTTTCCTCTGCTCAACTTCTCGCTTAGAGCCAACCTCGACGAACTCTTGTTCC 1071
Query 1093 CTATGAAGCTTTCTTTAGTGGAAGACAACAAAAGATTCTTCGCACTCACTTTTCCATTAC 1152
|||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1072 CTATGAAGCTTTCTTTAGTGGAAGACAACAAAAGATTCTTTGGAATCACTTTTCCATTAC 1131
Query 1153 TGATATCTTGTTTCTTGGGTGCAATTGCCATACCAGACATTTGGTACTTCTTTCAGTTCT 1212
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 1132 TGATATCTTGTTTCTTGGGTGCGATTGCAATACCGGACATTTGGTACTTCTTTCAGTTCT 1191
Query 1213 TGGGATCAACTTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTACGGA 1272
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1192 TGGGATCAACTTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTAAGGA 1251
Query 1273 ATGTAAATGGTTTCTCGACTTTAAGAGAGAAGATTGTAGCTTCAGTAATGCTTGTTCTTG 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 ATGTAAATGGTTTCTCGACTTTAAGAGAGAAGATTGTAGCTTCAGTAATGCTTGTTCTTG 1311
Query 1333 CTGTTGCCACAAGTATCATCGCTATTTCGACAAATATATACACTTTCACAGCAACAGAAG 1392
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1312 CTGTTGCCACAAGTATCATCGCCATTTCCACAAATATATACACTTTCACAGCAACAGAAG 1371
Query 1393 AAACATGAAACGCTTTCTGGAGTCCTTTCTCTTCAAGGATTTGTTAGATGGTAG--AGCT 1450
|||||||||| |||||| ||||||| ||||||||||| |||||||||||||||| ||||
Sbjct 1372 AAACATGAAAAGCTTTCAGGAGTCCCTTCTCTTCAAGAATTTGTTAGATGGTAGCGAGCT 1431
Query 1451 TGTGTTGCATTTATTCATGTCTATTGTATGTAAAATAGGTTTGTAAGAAGTGTA-T-TAT 1508
|||||||||||||||| | ||||| ||||||||||||||||||||||||||| | | |
Sbjct 1432 TGTGTTGCATTTATTCGTATCTAT---ATGTAAAATAGGTTTGTAAGAAGTGTAGTGTTT 1488
Query 1509 AATAGCAACTTCAGGAAAAATGTGTGTAT 1537
|||||||||||||||||||||||||||||
Sbjct 1489 AATAGCAACTTCAGGAAAAATGTGTGTAT 1517
> Ahg486062 jgi|Araly1|486062|fgenesh2_kg.5__2054__AT3G56200.1
Length=1601
Score = 811 bits (439), Expect = 0.0
Identities = 1061/1353 (78%), Gaps = 76/1353 (6%)
Strand=Plus/Plus
Query 56 TTTCTCCGGTAGTTGAAAGAAAATGTCTCCTGC-GATCAAAGCACCGCTCTTACCAAACC 114
||||||||| ||| | | |||||||| || | ||||||| | | ||||| || || |
Sbjct 38 TTTCTCCGGCGGTT-AGA-AAAATGTCACC-ACAGATCAAAACTCATCTCTTGCCTAAGC 94
Query 115 AAGAGCCTTCATCATCATCATCGGAGAACCATGGATCAT---TCGCCGG-AGCTGTGTTT 170
|||| || | || || || | |||||||||||||||| | |||| | | || |||
Sbjct 95 AAGAACC-T--TCGTCGTC-T--GAGAACCATGGATCATCAACCTCCGGCATC-GT-TTT 146
Query 171 -AACATCTCGACAAGCATCGTCGGAGCTGGAATTATGGCGATTCCGGCGGC-TTTCAAAG 228
||| | || || || || ||||||| ||||| ||| |||| |||||||| ||| || |
Sbjct 147 CAACGTGTCTACGAGTATAATCGGAGCCGGAATAATGTCGATGCCGGCGGCGTTT-AAGG 205
Query 229 TCCTAGGTGTAATCCCATC-TCTATCGATAATCGTAATCATAGCTTGGCTCTCCA--ATG 285
| || || || ||||| | | | | ||| ||| |||||||||||||| |||| ||
Sbjct 206 TTCTTGGAATAGTCCCAGCGT-TTTTGATTATCACGATCATAGCTTGGCTTTCCACCAT- 263
Query 286 TATCAGCTGGGTTTTTAATGAAATCCAGTCTCGCCGGAGAATCAACAACTTACGCCGGCG 345
| || | ||| ||| |||||||||| | ||||||||||||||||| ||||||||||| |
Sbjct 264 T-TCTGTTGGATTTCTAATGAAATCAACACTCGCCGGAGAATCAACTACTTACGCCGGAG 322
Query 346 TGATGAAGGAATCGTTCGGAAAATCTGG-TGCCGTTGCTGTTAC-GGTTGTTACAATGGT 403
| ||||| || |||||||||||| | || | |||| |||| || | ||| ||| |||||
Sbjct 323 TCATGAAAGAGTCGTTCGGAAAAACAGGAT-CCGTCGCTG-CACAGATTGCTACGATGGT 380
Query 404 TG-TGACTTTTGGGTCTATGATTAT-TTTCTCGATTATCATTGGTGATGTTATTTCGGGT 461
|| | |||||||| | ||||||| | ||| |||||||| || || ||||| ||||||||
Sbjct 381 TGCT-ACTTTTGGATGTATGATTGTCTTT-TCGATTATTATAGGCGATGTGCTTTCGGGT 438
Query 462 AATGAGAAA--GATGGA-ATCATACAT-TTAG-GTCTTCTTCAAGAATGGTTTGGTTCTC 516
||||| ||| || ||| ||| |||| || | || ||| ||||||||||||||||||
Sbjct 439 AATGA-AAATGGA-GGATCTCA-ACATCTTGGAGT-TTC-GCAAGAATGGTTTGGTTCTT 493
Query 517 ATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCATCTT--TGTCTTCCTCTTCCTTCC 574
| |||||||| |||||| |||| | |||||||||||| || || ||| |||| |||||
Sbjct 494 ACTGGTGGAACACGAGAATCTTCGCTTTGTTGTTCAT-TTACTG-CTTTGTCTTGCTTCC 551
Query 575 TTTAGTCTTATGCAGACGTGTAGAAAGATTGGCATTTAGTTCTGCAATTTCGTTTCTGCT 634
|| ||||| || |||||||| |||||| ||||||||||||| || |||||||||| ||
Sbjct 552 ATTGGTCTTGTGTAGACGTGTCGAAAGACTGGCATTTAGTTCAGCGGTTTCGTTTCTTCT 611
Query 635 TGC-GTTACTCTTTGTTGTCATAAGCTCGGTGTTAGCGATTAT-TGCTCTCGTGCAAGGG 692
||| ||| || ||||||||||||||||||||| | |||||| | || || ||| || ||
Sbjct 612 TGCGGTT-CTATTTGTTGTCATAAGCTCGGTGCTGGCGATT-TCCGCGCTGGTG-AATGG 668
Query 693 A-AGACAAAGCCTCCGAGACTCTTCCCTGAACTCAATGATGGTGGATTATCGTTTTTCAG 751
| | || ||| ||| ||||| || || | | | || | |||| |||||||| |
Sbjct 669 ACAAACGAAGAATCCAAGACTGTTTCC-GGAGTTAA-G-CAATGGAGGATCGTTTTGGAA 725
Query 752 TCTCTTCACTGCTTCCCCTGTCATTGTAACAGCCTTCACCTTTCATTTCAATGTCCATCC 811
|| ||||| ||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 726 ACTTTTCACAGCTTCCCCTGTTATAGTAACAGCCTTCACGTTTCATTTCAATGTTCATCC 785
Query 812 AGTAGCATTCGAACTCAAAGATCCATTA-AATGTGCTTTCAGCAAC-AAGGATCTCTGTG 869
| | | ||| || ||||||||||||||| || ||| | ||||||| || |||||||||
Sbjct 786 AATTGGATTTGAGCTCAAAGATCCATTACAA-GTGATCCCAGCAACTAA-GATCTCTGTC 843
Query 870 ATTC-TGTGTGCTACGATCTACTCAGCTACTGGTCTCTTTTGTTACCTTCTGTTTGGGGA 928
| || |||| ||| || | |||| || ||||| ||||| | |||||||| ||||| ||
Sbjct 844 A-TCTTGTGCGCTGCGTTATACTTTGCAACTGGACTCTTCGGGTACCTTCTCTTTGGAGA 902
Query 929 TTCCACTATGACAGATGTTCTAATGAACTTTGATCAAAGCACCAGTTCTTCGGTTGGTTC 988
| | |||||| ||||| ||||| |||||||||| || ||| | ||||||| |||||||
Sbjct 903 TGCAACTATGTCAGATATTCTAGTGAACTTTGACCAGAGCTCTGGTTCTTCCATTGGTTC 962
Query 989 AT-TACTAAATGATATTGTTAGACTCAGCTACGCGATTCACCTCATGCTCGTGTTTCCTC 1047
| | || || || ||||| ||||||||||||||| ||||||||||||| || |||||||
Sbjct 963 -TCTTCTCAACGACATTGTCAGACTCAGCTACGCGCTTCACCTCATGCTGGTCTTTCCTC 1021
Query 1048 TGC-TCAACTTCTCGCTT-AGAGCCAACCTCGACGAACTCTTGTTCCCTATGAAGCTTTC 1105
| | | |||||||| || ||||| || |||||||||||||||||||| | ||||| ||
Sbjct 1022 T-CATGAACTTCTC-ATTGAGAGCAAATCTCGACGAACTCTTGTTCCCCAAGAAGCCGTC 1079
Query 1106 TTTAGTGGAAGACAAC-AAAAGATTCTTCGCACTCACTTTTCCAT-TACTGATAT-CTTG 1162
|| | ||||| || ||||||||| ||| ||||||| | | | ||||||| | | ||
Sbjct 1080 CTTGGAAAAAGAC-ACAAAAAGATTCATCGGACTCACTCTGGC-TCTACTGATTTGC-TG 1136
Query 1163 TTTCTTGGGTGCAATTGCCATACCAGACATTTGGTACTTCTTTCAGTTCTTGGGATCAAC 1222
||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TTTCTTGTCTGCAATCGCTGTACCAGACATTTGGTACTTCTTTCAGTTCTTGGGATCAAC 1196
Query 1223 TTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTACGGAATGTAAATGG 1282
| |||||||| ||||||||||| |||||||| || ||||| ||| ||||||| ||||
Sbjct 1197 CACCACAGTCTCCATAGCATTCATATTTCCAGCCGCCATTGTTCTAAGGAATGTCCATGG 1256
Query 1283 TTTCTCGACTTTAAGAGAGAAGATTGTAGCTTC-AGTAATGCTTGTTCTTGCTGTTGCCA 1341
| | || || | |||||||||||| |||||| | | |||||||||| |||||||||||||
Sbjct 1257 TGTATCAACCTCAAGAGAGAAGATCGTAGCTGCGA-TAATGCTTGTACTTGCTGTTGCCA 1315
Query 1342 CAAGTATCATCGCTATTTCGACAAATATATACA 1374
| || || || ||||| || |||||| ||||||
Sbjct 1316 CTAGCATTATTGCTATCTCAACAAATTTATACA 1348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61172933470
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5