BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40420.1 Length=1632 Score E Sequences producing significant alignments: (Bits) Value Ahg483098 jgi|Araly1|483098|fgenesh2_kg.4__2158__AT2G40420.1 2370 0.0 Ahg486062 jgi|Araly1|486062|fgenesh2_kg.5__2054__AT3G56200.1 811 0.0 > Ahg483098 jgi|Araly1|483098|fgenesh2_kg.4__2158__AT2G40420.1 Length=1517 Score = 2370 bits (1283), Expect = 0.0 Identities = 1450/1529 (95%), Gaps = 17/1529 (1%) Strand=Plus/Plus Query 14 CATTACCATTTCCTCTTCACCGGGGAAAATTCTGTTAGTTTCTTTCTCCGGTAGT-TGAA 72 |||||||||||||||||| ||||||||||||| | | | |||||||||||| | || Sbjct 1 CATTACCATTTCCTCTTCGCCGGGGAAAATTC---T-G---C-TTCTCCGGTAGTAT-AA 51 Query 73 AGAAAATGTCTCCTGCGATCAAAGCACCGCTCTTACCAAACCAAGAGCCTTCATCATCAT 132 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 52 AGAAAATGTCTCCTGCGATTAAAGCTCCGCTCTTACCAAACCAAGAGCCTTCATCATCAT 111 Query 133 CATCGGAGAACCATGGATCATTCGCCGGAGCTGTGTTTAACATCTCGACAAGCATCGTCG 192 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 112 CATCGGAGAACCATGGATCATTCGCCGGAGCTGTGTTTAACATCTCAACAAGCATAGTCG 171 Query 193 GAGCTGGAATTATGGCGATTCCGGCGGCTTTCAAAGTCCTAGGTGTAATCCCATCTCTAT 252 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 172 GAGCTGGAATTATGGCGATTCCGGCGGCTTTCAAAGTTCTGGGTGTAATCCCATCTCTCT 231 Query 253 CGATAATCGTAATCATAGCTTGGCTCTCCAATGTATCAGCTGGGTTTTTAATGAAATCCA 312 |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 232 CGATAATCGTTATCATAGCTTGGCTATCAAATGTATCAGCTGGGTTTTTAATGAAATCCA 291 Query 313 GTCTCGCCGGAGAATCAACAACTTACGCCGGCGTGATGAAGGAATCGTTCGGAAAATCTG 372 ||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||||| Sbjct 292 GTCTCGCCGGAGAATCAACGACTTACGCCGGCGTAATGAAAGAATCGTTTGGAAAATCTG 351 Query 373 GTGCCGTTGCTGTTACGGTTGTTACAATGGTTGTGACTTTTGGGTCTATGATTATTTTCT 432 ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 352 GTGCCGTCGCTGTTACGATTGTTACAATGGTTGTGACTTTTGGGTCTATGATTATTTTCT 411 Query 433 CGATTATCATTGGTGATGTTATTTCGGGTAATGAGAAAGATGGAATCATACATTTAGGTC 492 ||||||| || ||||||||| |||| |||||||| ||||||||||||||||||||||||| Sbjct 412 CGATTATTATAGGTGATGTTCTTTCTGGTAATGAAAAAGATGGAATCATACATTTAGGTC 471 Query 493 TTCTTCAAGAATGGTTTGGTTCTCATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCA 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 472 TTCTTCAAGAATGGTTTGGTTCTCATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCA 531 Query 553 TCTTTGTCTTCCTCTTCCTTCCTTTAGTCTTATGCAGACGTGTAGAAAGATTGGCATTTA 612 | |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | Sbjct 532 TTTTTGTCTTCCTCTTGCTTCCTTTAGTCTTATGCAGACGTGTAGAAAGATTAGCATTAA 591 Query 613 GTTCTGCAATTTCGTTTCTGCTTGCGTTACTCTTTGTTGTCATAAGCTCGGTGTTAGCGA 672 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 592 GTTCTGCAATTTCGTTTCTGCTTGCGTTACTCTTTGTTGTTATAAGCTCGGTGTTAGCGA 651 Query 673 TTATTGCTCTCGTGCAAGGGAAGACAAAGCCTCCGAGACTCTTCCCTGAACTCAATGATG 732 ||||||| || || |||||||| |||||| |||||||||||||||| |||||||| |||| Sbjct 652 TTATTGCACTAGTCCAAGGGAAAACAAAGACTCCGAGACTCTTCCCAGAACTCAACGATG 711 Query 733 GTGGATTATCGTTTTTCAGTCTCTTCACTGCTTCCCCTGTCATTGTAACAGCCTTCACCT 792 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 712 GTGGATTATCGTTTTTCAGTCTCTTCACTGCTTCCCCTGTCATTGTAACAGCTTTCACAT 771 Query 793 TTCATTTCAATGTCCATCCAGTAGCATTCGAACTCAAAGATCCATTAAATGTGCTTTCAG 852 |||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| Sbjct 772 TTCATTTCAATGTCCATCCAGTGGCATTTGAACTCAAAGATCCATTAGATGTGCTTTCAG 831 Query 853 CAACAAGGATCTCTGTGATTCTGTGTGCTACGATCTACTCAGCTACTGGTCTCTTTTGTT 912 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 832 CAACAAGGATCTCTGTGATTCTGTGTGCTGCGATCTACTCAGCCACTGGTCTCTTTTGTT 891 Query 913 ACCTTCTGTTTGGGGATTCCACTATGACAGATGTTCTAATGAACTTTGATCAAAGCACCA 972 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 892 ACCTTCTGTTTGGGGATTCCACTATGACAGATGTTTTAATGAACTTTGATCAAAGCACCA 951 Query 973 GTTCTTCGGTTGGTTCATTACTAAATGATATTGTTAGACTCAGCTACGCGATTCACCTCA 1032 ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 952 GTTCTTCCATTGGTTCATTACTAAATGACATTGTTAGACTCAGCTACGCGATTCACCTCA 1011 Query 1033 TGCTCGTGTTTCCTCTGCTCAACTTCTCGCTTAGAGCCAACCTCGACGAACTCTTGTTCC 1092 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1012 TGCTTGTGTTTCCTCTGCTCAACTTCTCGCTTAGAGCCAACCTCGACGAACTCTTGTTCC 1071 Query 1093 CTATGAAGCTTTCTTTAGTGGAAGACAACAAAAGATTCTTCGCACTCACTTTTCCATTAC 1152 |||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| Sbjct 1072 CTATGAAGCTTTCTTTAGTGGAAGACAACAAAAGATTCTTTGGAATCACTTTTCCATTAC 1131 Query 1153 TGATATCTTGTTTCTTGGGTGCAATTGCCATACCAGACATTTGGTACTTCTTTCAGTTCT 1212 |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct 1132 TGATATCTTGTTTCTTGGGTGCGATTGCAATACCGGACATTTGGTACTTCTTTCAGTTCT 1191 Query 1213 TGGGATCAACTTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTACGGA 1272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1192 TGGGATCAACTTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTAAGGA 1251 Query 1273 ATGTAAATGGTTTCTCGACTTTAAGAGAGAAGATTGTAGCTTCAGTAATGCTTGTTCTTG 1332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1252 ATGTAAATGGTTTCTCGACTTTAAGAGAGAAGATTGTAGCTTCAGTAATGCTTGTTCTTG 1311 Query 1333 CTGTTGCCACAAGTATCATCGCTATTTCGACAAATATATACACTTTCACAGCAACAGAAG 1392 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 1312 CTGTTGCCACAAGTATCATCGCCATTTCCACAAATATATACACTTTCACAGCAACAGAAG 1371 Query 1393 AAACATGAAACGCTTTCTGGAGTCCTTTCTCTTCAAGGATTTGTTAGATGGTAG--AGCT 1450 |||||||||| |||||| ||||||| ||||||||||| |||||||||||||||| |||| Sbjct 1372 AAACATGAAAAGCTTTCAGGAGTCCCTTCTCTTCAAGAATTTGTTAGATGGTAGCGAGCT 1431 Query 1451 TGTGTTGCATTTATTCATGTCTATTGTATGTAAAATAGGTTTGTAAGAAGTGTA-T-TAT 1508 |||||||||||||||| | ||||| ||||||||||||||||||||||||||| | | | Sbjct 1432 TGTGTTGCATTTATTCGTATCTAT---ATGTAAAATAGGTTTGTAAGAAGTGTAGTGTTT 1488 Query 1509 AATAGCAACTTCAGGAAAAATGTGTGTAT 1537 ||||||||||||||||||||||||||||| Sbjct 1489 AATAGCAACTTCAGGAAAAATGTGTGTAT 1517 > Ahg486062 jgi|Araly1|486062|fgenesh2_kg.5__2054__AT3G56200.1 Length=1601 Score = 811 bits (439), Expect = 0.0 Identities = 1061/1353 (78%), Gaps = 76/1353 (6%) Strand=Plus/Plus Query 56 TTTCTCCGGTAGTTGAAAGAAAATGTCTCCTGC-GATCAAAGCACCGCTCTTACCAAACC 114 ||||||||| ||| | | |||||||| || | ||||||| | | ||||| || || | Sbjct 38 TTTCTCCGGCGGTT-AGA-AAAATGTCACC-ACAGATCAAAACTCATCTCTTGCCTAAGC 94 Query 115 AAGAGCCTTCATCATCATCATCGGAGAACCATGGATCAT---TCGCCGG-AGCTGTGTTT 170 |||| || | || || || | |||||||||||||||| | |||| | | || ||| Sbjct 95 AAGAACC-T--TCGTCGTC-T--GAGAACCATGGATCATCAACCTCCGGCATC-GT-TTT 146 Query 171 -AACATCTCGACAAGCATCGTCGGAGCTGGAATTATGGCGATTCCGGCGGC-TTTCAAAG 228 ||| | || || || || ||||||| ||||| ||| |||| |||||||| ||| || | Sbjct 147 CAACGTGTCTACGAGTATAATCGGAGCCGGAATAATGTCGATGCCGGCGGCGTTT-AAGG 205 Query 229 TCCTAGGTGTAATCCCATC-TCTATCGATAATCGTAATCATAGCTTGGCTCTCCA--ATG 285 | || || || ||||| | | | | ||| ||| |||||||||||||| |||| || Sbjct 206 TTCTTGGAATAGTCCCAGCGT-TTTTGATTATCACGATCATAGCTTGGCTTTCCACCAT- 263 Query 286 TATCAGCTGGGTTTTTAATGAAATCCAGTCTCGCCGGAGAATCAACAACTTACGCCGGCG 345 | || | ||| ||| |||||||||| | ||||||||||||||||| ||||||||||| | Sbjct 264 T-TCTGTTGGATTTCTAATGAAATCAACACTCGCCGGAGAATCAACTACTTACGCCGGAG 322 Query 346 TGATGAAGGAATCGTTCGGAAAATCTGG-TGCCGTTGCTGTTAC-GGTTGTTACAATGGT 403 | ||||| || |||||||||||| | || | |||| |||| || | ||| ||| ||||| Sbjct 323 TCATGAAAGAGTCGTTCGGAAAAACAGGAT-CCGTCGCTG-CACAGATTGCTACGATGGT 380 Query 404 TG-TGACTTTTGGGTCTATGATTAT-TTTCTCGATTATCATTGGTGATGTTATTTCGGGT 461 || | |||||||| | ||||||| | ||| |||||||| || || ||||| |||||||| Sbjct 381 TGCT-ACTTTTGGATGTATGATTGTCTTT-TCGATTATTATAGGCGATGTGCTTTCGGGT 438 Query 462 AATGAGAAA--GATGGA-ATCATACAT-TTAG-GTCTTCTTCAAGAATGGTTTGGTTCTC 516 ||||| ||| || ||| ||| |||| || | || ||| |||||||||||||||||| Sbjct 439 AATGA-AAATGGA-GGATCTCA-ACATCTTGGAGT-TTC-GCAAGAATGGTTTGGTTCTT 493 Query 517 ATTGGTGGAATACGAGATTCTTTGGTTTGTTGTTCATCTT--TGTCTTCCTCTTCCTTCC 574 | |||||||| |||||| |||| | |||||||||||| || || ||| |||| ||||| Sbjct 494 ACTGGTGGAACACGAGAATCTTCGCTTTGTTGTTCAT-TTACTG-CTTTGTCTTGCTTCC 551 Query 575 TTTAGTCTTATGCAGACGTGTAGAAAGATTGGCATTTAGTTCTGCAATTTCGTTTCTGCT 634 || ||||| || |||||||| |||||| ||||||||||||| || |||||||||| || Sbjct 552 ATTGGTCTTGTGTAGACGTGTCGAAAGACTGGCATTTAGTTCAGCGGTTTCGTTTCTTCT 611 Query 635 TGC-GTTACTCTTTGTTGTCATAAGCTCGGTGTTAGCGATTAT-TGCTCTCGTGCAAGGG 692 ||| ||| || ||||||||||||||||||||| | |||||| | || || ||| || || Sbjct 612 TGCGGTT-CTATTTGTTGTCATAAGCTCGGTGCTGGCGATT-TCCGCGCTGGTG-AATGG 668 Query 693 A-AGACAAAGCCTCCGAGACTCTTCCCTGAACTCAATGATGGTGGATTATCGTTTTTCAG 751 | | || ||| ||| ||||| || || | | | || | |||| |||||||| | Sbjct 669 ACAAACGAAGAATCCAAGACTGTTTCC-GGAGTTAA-G-CAATGGAGGATCGTTTTGGAA 725 Query 752 TCTCTTCACTGCTTCCCCTGTCATTGTAACAGCCTTCACCTTTCATTTCAATGTCCATCC 811 || ||||| ||||||||||| || |||||||||||||| |||||||||||||| ||||| Sbjct 726 ACTTTTCACAGCTTCCCCTGTTATAGTAACAGCCTTCACGTTTCATTTCAATGTTCATCC 785 Query 812 AGTAGCATTCGAACTCAAAGATCCATTA-AATGTGCTTTCAGCAAC-AAGGATCTCTGTG 869 | | | ||| || ||||||||||||||| || ||| | ||||||| || ||||||||| Sbjct 786 AATTGGATTTGAGCTCAAAGATCCATTACAA-GTGATCCCAGCAACTAA-GATCTCTGTC 843 Query 870 ATTC-TGTGTGCTACGATCTACTCAGCTACTGGTCTCTTTTGTTACCTTCTGTTTGGGGA 928 | || |||| ||| || | |||| || ||||| ||||| | |||||||| ||||| || Sbjct 844 A-TCTTGTGCGCTGCGTTATACTTTGCAACTGGACTCTTCGGGTACCTTCTCTTTGGAGA 902 Query 929 TTCCACTATGACAGATGTTCTAATGAACTTTGATCAAAGCACCAGTTCTTCGGTTGGTTC 988 | | |||||| ||||| ||||| |||||||||| || ||| | ||||||| ||||||| Sbjct 903 TGCAACTATGTCAGATATTCTAGTGAACTTTGACCAGAGCTCTGGTTCTTCCATTGGTTC 962 Query 989 AT-TACTAAATGATATTGTTAGACTCAGCTACGCGATTCACCTCATGCTCGTGTTTCCTC 1047 | | || || || ||||| ||||||||||||||| ||||||||||||| || ||||||| Sbjct 963 -TCTTCTCAACGACATTGTCAGACTCAGCTACGCGCTTCACCTCATGCTGGTCTTTCCTC 1021 Query 1048 TGC-TCAACTTCTCGCTT-AGAGCCAACCTCGACGAACTCTTGTTCCCTATGAAGCTTTC 1105 | | | |||||||| || ||||| || |||||||||||||||||||| | ||||| || Sbjct 1022 T-CATGAACTTCTC-ATTGAGAGCAAATCTCGACGAACTCTTGTTCCCCAAGAAGCCGTC 1079 Query 1106 TTTAGTGGAAGACAAC-AAAAGATTCTTCGCACTCACTTTTCCAT-TACTGATAT-CTTG 1162 || | ||||| || ||||||||| ||| ||||||| | | | ||||||| | | || Sbjct 1080 CTTGGAAAAAGAC-ACAAAAAGATTCATCGGACTCACTCTGGC-TCTACTGATTTGC-TG 1136 Query 1163 TTTCTTGGGTGCAATTGCCATACCAGACATTTGGTACTTCTTTCAGTTCTTGGGATCAAC 1222 ||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 1137 TTTCTTGTCTGCAATCGCTGTACCAGACATTTGGTACTTCTTTCAGTTCTTGGGATCAAC 1196 Query 1223 TTCTACAGTCTCTATAGCATTCATCTTTCCAGCTGCAATTGTCCTACGGAATGTAAATGG 1282 | |||||||| ||||||||||| |||||||| || ||||| ||| ||||||| |||| Sbjct 1197 CACCACAGTCTCCATAGCATTCATATTTCCAGCCGCCATTGTTCTAAGGAATGTCCATGG 1256 Query 1283 TTTCTCGACTTTAAGAGAGAAGATTGTAGCTTC-AGTAATGCTTGTTCTTGCTGTTGCCA 1341 | | || || | |||||||||||| |||||| | | |||||||||| ||||||||||||| Sbjct 1257 TGTATCAACCTCAAGAGAGAAGATCGTAGCTGCGA-TAATGCTTGTACTTGCTGTTGCCA 1315 Query 1342 CAAGTATCATCGCTATTTCGACAAATATATACA 1374 | || || || ||||| || |||||| |||||| Sbjct 1316 CTAGCATTATTGCTATCTCAACAAATTTATACA 1348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61172933470 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5