BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40430.2
Length=1723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934847 jgi|Araly1|934847|scaffold_402835.1 1050 0.0
Ahg937041 jgi|Araly1|937041|scaffold_501232.1 272 6e-72
> Ahg934847 jgi|Araly1|934847|scaffold_402835.1
Length=1485
Score = 1050 bits (568), Expect = 0.0
Identities = 639/674 (95%), Gaps = 2/674 (0%)
Strand=Plus/Plus
Query 48 AGATAACGAGAAAAAATGGGGAAGAGGTCGAAAACATCAAGGAAAGGGAAAAAAGCATGG 107
||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 10 AGAGAACGAGAAAAAATGGGGAAGAAGTCGAAAACTTCAAGGAAAGGGAAAAAAGCATGG 69
Query 108 AGGGCTAACATTAGCTCCGAGGACATTGAAGATTTCTTCGAGAAAACTACCAGAGATGCT 167
||||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 70 AGGGCTAACATAAGCACCGAGGACATTGAAGATTTCTTCGAGAAAACCACCAAAGATGCT 129
Query 168 CTCTCCGGTGGCAATCTCTCCGCTGCTCCCAGCGAAGACTTGTTCCACGTCGATAAATCC 227
|||||||| || |||||||||| |||||||||||| ||| ||||||||||||||||||||
Sbjct 130 CTCTCCGGCGGTAATCTCTCCGGTGCTCCCAGCGAGGACCTGTTCCACGTCGATAAATCC 189
Query 228 CATGACCTTCCGGTGAAGCGAAAGATTGAGAAACATAGAGAGAGAGTGCTCCGTGTTGAC 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CATGACCTTCCGGTGAAGCGAAAGATTGAGAAACATAGAGAGAGAGTGCTCCGTGTTGAC 249
Query 288 AGTATCTTAAAGAAGAATCCATTTGTCCAGTTAGTGCCATCTTCAAAGCCAAAGTTGAAG 347
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 250 AGTATCTTAAAGAAGAATCCATTTGTCCAGTTAGTGCCATCTTCAAAGCCTAAGTTGAAG 309
Query 348 AAAAGTAAGAAGACAATCGTTATAGAAGACAAAGCACCTAAACAAGTTCAAAA-AAGTGT 406
|| |||||||||||||||||||||||||||||| ||||||||||||||||||| || |||
Sbjct 310 AAGAGTAAGAAGACAATCGTTATAGAAGACAAAACACCTAAACAAGTTCAAAAGAA-TGT 368
Query 407 TGGTGACGATTCTGTAATGGCCGACTTGTGGGGTGATGATAGTAAAGGAGAACATGAGAG 466
||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||
Sbjct 369 TGGTGACGACTCTGTAATGGTGGACTTGTGGGGTGATAATAGTAAAGGAGAAGATGAGAG 428
Query 467 CAATCCTAGAAAGATTTTCAAAAATCCTTCGATTATTTCAGCAGTAGAAATTGAACATCC 526
|||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||||||
Sbjct 429 CAATCCTAGAAAGATTTTCAAAAAGCCATCGATTATTCCAGCAGTGGAAATTGAACATCC 488
Query 527 AGGATGCTCATACAACCCTACAACTGAGAGTCACCAGGATATGTTGGCTGAAGCCGTCGC 586
||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 489 AGGATGCTCATACAACCCTACAACTGAAAGTCACCAGGATATGTTGGCTGAAGCTGTTGC 548
Query 587 TCAAGAAATGCAGAAAGTTTACAAAACTGAGTTAGGGCCTGCACCTGTTCCTTTGACTAT 646
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 549 TCAAGAAATGCAGAAAGTTTACAAAACTGAATTAGGGCCTGCGCCTGTTCCTTTGACTAT 608
Query 647 TGAAGGGGATACACTCAGTGAAGATGAGAGGTACTTTCTTGATGTGGACAATTTTAGTGA 706
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 609 TGAAGGGGATTCACTCAGTGAAGATGAGAGGTACTTTCTTGATGTGGACAATGTTGGTGA 668
Query 707 AGGCGAAGATAATG 720
|||||||||| |||
Sbjct 669 AGGCGAAGATGATG 682
Score = 1013 bits (548), Expect = 0.0
Identities = 608/636 (96%), Gaps = 8/636 (1%)
Strand=Plus/Plus
Query 759 TTAAAGGAGAACCCATTTGTCCAGTTAAAGCCATCTTCAAATACAAACTTGAAGA-AA-- 815
|||||| |||||||||||||||||||| |||||||||||| || ||||||||| ||
Sbjct 685 TTAAAGCAGAACCCATTTGTCCAGTTAGTGCCATCTTCAAAGCCAGACTTGAAGACAATC 744
Query 816 ---ATAGAAGACAAAACACCTAGACAAGCTCAAAAAAGTGTTGGTGACGATTCTGTAATG 872
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GTTATAGAAGACAAAACTCCTAGACAAGCTCAAAAAAGTGTTGGTGACGATTCTGTAATG 804
Query 873 GTGGACTTGTTGGGTGATGATATTAAAGAAGACCTGAAGTACTTTCTTGAAGTGGGCAAT 932
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 805 GTGGACTTGTTGGGTGATGATAGTAAAGAAGACCTGAGGTACTTTCTTGAAGTGGGCAAT 864
Query 933 GTTGGTGAAGGTGAAGATAATAAAGATGTTAAGATTGAAGTGTCAGAGGCTGGGAACA-A 991
||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||| |
Sbjct 865 GTTGGTGAAGGTGAAGATAATGAAGATGTTGAGAATGAAGTGTCAGAGGCTGGGAACATA 924
Query 992 TGTCTCAAGGAAAACAAAGAGGGTTACCCGTGTGGAATTAAATAAGCGATGTAGGCAAAA 1051
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 T-TCGCAAGGAAAACAAAGAGGGTTACCCGTGTGGAATTAAATAAGCGATGTAGGCAAAA 983
Query 1052 GGCACTGCGaaaaaaaGAGACAAAGGAAAAGGCTAAAGAGAAGATATTAAACGAAATTGA 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 GGCACTGCGAAAAAAAGAGACAAAGGAAAAGGCTAAAGAGAAGATATTAAACGAAATTGA 1043
Query 1112 CAGCTTGCCCAACATCTTAGAAGAAATAGCCAAAGAAGATGAGGATAAACAGAATAAACA 1171
||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1044 CAGCTTGCCAAATATCTTAGAAGAAATAGCCAGAGAAGATGAGGATAAACAGAATAAACA 1103
Query 1172 TTTACGAAGGGTCATCGCCAAGCAGGAAGTGCTGAAGATACGTCCTCCTCGGTTGGGAAA 1231
||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1104 TTTACGACGGGTCATTGCCAAGGAGGAAGTGCTGAAGATACGTCCTCCTCGGTTGGGAAA 1163
Query 1232 GTACAAATTTGAGGCTCCTCCAGTTCAAGTCCTCTTGACAGAAGAGATGACTGGGTCACT 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 GTACAAATTTGAGGCTCCTCCAGTTCAAGTCCTCTTGACAGAAGAGATGACTGGGTCACT 1223
Query 1292 TCGTAAGCTGAAGGCATGTTGCACTCTTGCAAGAGATCGATTCAAGAGCCTCGAGAAGCG 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TCGTAAGCTGAAGGCATGTTGCACTCTTGCAAGAGATCGATTCAAGAGCCTCGAGAAGCG 1283
Query 1352 AGGAATACTTGTTCCCTCAAAACAGATTAGAAGGTT 1387
|||||||||||||||||||||||| |||||||||||
Sbjct 1284 AGGAATACTTGTTCCCTCAAAACAAATTAGAAGGTT 1319
Score = 163 bits (88), Expect = 4e-39
Identities = 147/173 (85%), Gaps = 13/173 (8%)
Strand=Plus/Plus
Query 292 TCTTAAAGAAGAATCCATTTGTCCAGTTAGTGCCATCTTCAAAGCCAAAGTTGAAGAAAA 351
|||||||| |||| |||||||||||||||||||||||||||||||| || |
Sbjct 683 TCTTAAAGCAGAACCCATTTGTCCAGTTAGTGCCATCTTCAAAGCC--------AG---A 731
Query 352 GTAAGAAGACAATCGTTATAGAAGACAAAGCACCTAAACAAGTTCAAAAAAGTGTTGGTG 411
| ||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||
Sbjct 732 CT-TGAAGACAATCGTTATAGAAGACAAAACTCCTAGACAAGCTCAAAAAAGTGTTGGTG 790
Query 412 ACGATTCTGTAATGGCCGACTTGTGGGGTGATGATAGTAAAGGAGAACATGAG 464
||||||||||||||| ||||||| ||||||||||||||||| ||| | ||||
Sbjct 791 ACGATTCTGTAATGGTGGACTTGTTGGGTGATGATAGTAAAGAAGACC-TGAG 842
> Ahg937041 jgi|Araly1|937041|scaffold_501232.1
Length=396
Score = 272 bits (147), Expect = 6e-72
Identities = 209/238 (88%), Gaps = 8/238 (3%)
Strand=Plus/Plus
Query 328 CTTCAAAGCCAAAGTTGAAGAA-AAGTAAGAAGACAATC-GTTATAGAAGACAAAGCACC 385
|||||||||||||||| ||||| || | ||||| ||||| |||| ||||| ||||||
Sbjct 75 CTTCAAAGCCAAAGTTAAAGAAGAA-TGAGAAGGCAATCGGTTA-CGAAGAGAAAGCATG 132
Query 386 TAAACAAGTTCA-AAAAAGTGTTGGTGACGATTCTGTAATGGCCGACTTGTGGGGTGATG 444
|||||||||||| ||||| |||||||||||| |||||||| | ||||| |||| |||||
Sbjct 133 TAAACAAGTTCATAAAAA-TGTTGGTGACGACTCTGTAATAGTGGACTTATGGGCTGATG 191
Query 445 ATAGTAAAGGAGAACATGAGAGCAATCCTAGAAAGATTTTCAAAAATCCTTCGATTATTT 504
|||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||
Sbjct 192 ATAGTAAAGGAGAAGATGAGAGCAATCCTAGAAAGATTTTCAAAAAGCCATCGATTATTC 251
Query 505 CAGCAGTAGAAATTGAACATCCAGGATGCTCATACAACCCTACAACTGAGA-GTCACC 561
||||||| ||||||||||||| |||||| |||||||||||||||| || || ||||||
Sbjct 252 CAGCAGTGGAAATTGAACATCGAGGATGGTCATACAACCCTACAAGTG-GAAGTCACC 308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64639145765
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5