BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40435.1
Length=932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483101 jgi|Araly1|483101|fgenesh2_kg.4__2161__AT2G40435.1 1232 0.0
Ahg486063 jgi|Araly1|486063|fgenesh2_kg.5__2055__AT3G56220.1 357 8e-98
> Ahg483101 jgi|Araly1|483101|fgenesh2_kg.4__2161__AT2G40435.1
Length=863
Score = 1232 bits (667), Expect = 0.0
Identities = 762/804 (95%), Gaps = 22/804 (3%)
Strand=Plus/Plus
Query 1 CACGAGATACAAATCGGAGTTGTCCGTATATTATATTTTGTAGCGATCAAGAGAGACTAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CACGAGATACAAATCGGAGTTGTCCGTATATTATATTTTGTAGCGATCAAGAGAGACTAA 60
Query 61 GGCAGACATGTGAGAGGGGAGAGGATCCTATAAACAATTTAAATCTAAGATCTCTGCTTC 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 61 GGCAGACATGTGAGAGGGGAGAGGATCCTATAAACAATTTAA-TCTAAGATCTCTGCTTC 119
Query 121 CT-CCTTCTCATATATATATTGCATATTTACACATAGTTCCTCTATACAGAAA-CTGATC 178
|| ||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||
Sbjct 120 CTTCCT-CTCATATATATATTGCATATTTACACATAGTTCCTCTATATAGAAATC-GATC 177
Query 179 GAGAAAACTCACGAAACAAGAGGCTAATCAAAAGCATAGAAGAAGAATGGTTTCAAGGGA 238
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 178 GAGAAAACTCACGAAACAAGAGGCTGATCAAAAGCATAGAAGAAGAATGGTTTCAAGGGA 237
Query 239 ACAGAAGAGAGGTTCTTTGCAAGAGAAGTTTCAATTGCTTCGTTCAATCACTAATTCACA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 ACAGAAGAGAGGTTCTTTGCAAGAGAAGTTTCAATTGCTTCGTTCAATCACTAATTCTCA 297
Query 299 TGCTGAAAACGATACATCGATCATAATGGATGCATCAAAATATATCCAAAAGCTTAAGCA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TGCTGAAAACGATACATCGATCATAATGGATGCATCAAAATATATCCAAAAGCTTAAGCA 357
Query 359 GAAAGTCGAAAGATTCAACCAAGACCCTACTGCAGAGCAATCTTCAAGCGAGCCCACGGA 418
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GAAAGTTGAAAGATTCAACCAAGACCCTACTGCAGAGCAATCTTCAAGCGAGCCCACGGA 417
Query 419 TCCAAAAACACCAATGGTAACAGTGGAAACCCTAGACAAGGGTTTTATGATAAACGTGTT 478
||| | |||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 418 TCCGACTACACCAATGGTAACCGTGGAAACCCTAGAAAAGGGTTTTATGATAAACGTATT 477
Query 479 CTCAGGAAAGAATCAGCCAGGGATGCTTGTTTCGGTATTAGAAGCCTTCGAGGATATTGG 538
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 478 CTCAGGGAAGAATCAGCCAGGGATGCTTGTTTCGGTATTAGAAGCCTTTGAGGATATTGG 537
Query 539 GCTTAACGTTCTTGAAGCTAGGGCTTCATGTACCGACTCTTTTAGCTTGCATGCCATGGG 598
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 538 GCTTAACGTTCTTGAAGCTAGGGTTTCATGTACCGACTCCTTTAGCTTGCATGCCATGGG 597
Query 599 ACTCGAGAATGAAGATGGAGAAAATATGGATGCTGAAGCAGTGAAACAGGCAGTGACTGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 598 ACTCGAGAATGAAGATGGAGAAAATATGGATGCTGAAGCAGTGAAACAGGCAGTGACAGA 657
Query 659 TGCAATCAGGAGCTGGGGTGAAATCAATGATCCACAGAACTAGATTGACCCACTTTTCAt 718
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 658 TGCAATCAGGAGCTGGGGTGAAAGCAATGATCCACAGAACTAGATTGACCCACTTTT-AT 716
Query 719 tttttttttATATATAATTTATTTCTTATTATACAAAATATAAGGAAATAACACAGTTTC 778
|| ||| |||| |||| | || | ||||||||||||||||||||||||||
Sbjct 717 TTATTTCTTAT-TATA-T--AT-----A-----CAAAATATAAGGAAATAACACAGTTTA 762
Query 779 TATAGTAtttctgcttcttctttt 802
|||||||||||| ||| || ||||
Sbjct 763 TATAGTATTTCTACTT-TT-TTTT 784
> Ahg486063 jgi|Araly1|486063|fgenesh2_kg.5__2055__AT3G56220.1
Length=657
Score = 357 bits (193), Expect = 8e-98
Identities = 387/476 (81%), Gaps = 31/476 (7%)
Strand=Plus/Plus
Query 221 AAGAATGGTTTCAAGGGAACAGAAGAGAGGTT-CT-T-TGCAAGAGAAGTTTCAATTGCT 277
|||||||||||| |||||||| |||||||||| || | ||| ||||||||||| |||||
Sbjct 20 AAGAATGGTTTCGAGGGAACACAAGAGAGGTTCCTCTCTGCGTGAGAAGTTTCATTTGCT 79
Query 278 TCGTTCAATCACTAATTCACATGCTGAAAACGATACATC-GATCATAATGGATGCATCAA 336
|||||||||||||||||| |||||||| | ||| ||||| | ||||||||||||||||||
Sbjct 80 TCGTTCAATCACTAATTCTCATGCTGAGAGCGAAACATCTG-TCATAATGGATGCATCAA 138
Query 337 AATATATCCAAAAGCTTAAGCAGAAAGTCGAAAGATTCAACCA--AGACCCTAC-TGCAG 393
|||||||| ||||||||||||||||||| |||| | ||||| | ||||| || | | |
Sbjct 139 AATATATCAAAAAGCTTAAGCAGAAAGTAGAAAAAATCAACAATGAGACC--ACGT-CTG 195
Query 394 AGCAATCTT-CAAGCGAGCCCACGGATCCAAAAACACCAATGGTAACAGTGGAAACCCTA 452
||||||||| | |||| | | |||||||| | | | |||| |||||||||||||||
Sbjct 196 AGCAATCTTTCC-GCGAATCTTCCGATCCAAAT-C-CTA-TGGTTACAGTGGAAACCCTA 251
Query 453 GACAAGGGTTTTATGATAAACGTGTTCTCAG-GAAAGAATCAGCCAGGGATGCTTG-TTT 510
|| ||||| || ||| |||| || | |||| ||| |||| || |||| ||| ||| |||
Sbjct 252 GAGAAGGGGTTCATGGTAAAAGTAATGTCAGTGAA-GAATGAGGCAGGCATG-TTGGTTT 309
Query 511 CG-GTAT-TAGAAGCCTTCGAGGATATTGGGCTTAACGTTCTTGAAGCTAGGGCTTCATG 568
| || | | ||| |||| || ||| |||| ||| | ||| |||||||||||| ||||||
Sbjct 310 -GTGT-TCTCGAAACCTTTGAAGATCTTGGACTTGATGTTGTTGAAGCTAGGGTTTCATG 367
Query 569 TACCGACTCTTTTAGCTTGCATGCCATGGGA-C-TCGAG-AATGAA-GATGGAGAAAAT- 623
||| ||| | |||||||| |||||||| || | || | ||| || |||||||| | |
Sbjct 368 TACAGACACATTTAGCTTACATGCCATCGGTTCATCAAATAAT-AATGATGGAGACA-TC 425
Query 624 ATGGATGCTGAAGCAGTGAAACAGGCAGTGACTGATGCAATCAGGAGCTGGGGTGA 679
|||||||||||||||||||||||||||||||| || |||||||||| |||| ||||
Sbjct 426 ATGGATGCTGAAGCAGTGAAACAGGCAGTGACAGAAGCAATCAGGACCTGGAGTGA 481
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34577485719
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5