BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40440.1
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934849 jgi|Araly1|934849|scaffold_402837.1 505 2e-142
> Ahg934849 jgi|Araly1|934849|scaffold_402837.1
Length=586
Score = 505 bits (273), Expect = 2e-142
Identities = 297/309 (96%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACAGAAACCAACAAAGAGCTTTTCGTGGGTGGATTTGCAAAGATTTTGAAAGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 24 ATGGCAACAGAAACCAACAAAGAGCTTTTCGTGGGTGGATTTGCAAAGATTTTGAAAGAA 83
Query 61 CAACGTCAAGTCGATGTACGGCTTAAGGCAGGGGACAGTGGTGATGAGGGTGCTTCTACT 120
|||||||||||||||||||| || |||||||||||||||||||| | ||||||||||| |
Sbjct 84 CAACGTCAAGTCGATGTACGTCTAAAGGCAGGGGACAGTGGTGAGGGGGGTGCTTCTATT 143
Query 121 TCTGCCCATAAGCTTGTTCTGTCTGCAAGATCAGAGGTGTTTAAGAAGATGTTGGAGTCA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 144 TCTGCCCATAAGCTTGTTCTGTCTGCAAGATCAGAGGTGTTTAAGAAGATGTTGGAATCA 203
Query 181 GACGAGATCAAGGCTTCGGCTCAACTAGAGACAATCACTCTCTGTGAGATGAAACACGAA 240
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 204 GACGAGATCAAGACTTCGGCTCAGCTAGAGACAATCACTCTCTGTGAGATGAAACACGAA 263
Query 241 GAATTAGAGGCTTTCATTGAATTCATATACAGCGACGGCTCTATGCTTTCTGCAAAAGAG 300
||||||||||||||| |||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 264 GAATTAGAGGCTTTCCTTGAATTCTTATACAGCGACGGCTCTATGCTTTCAGAAAAAGAG 323
Query 301 AAGCAACAC 309
|||||||||
Sbjct 324 AAGCAACAC 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21405285429
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5