BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40450.1
Length=630
Score E
Sequences producing significant alignments: (Bits) Value
Ahg345842 jgi|Araly1|345842|fgenesh1_pg.C_scaffold_4002184 872 0.0
Ahg934849 jgi|Araly1|934849|scaffold_402837.1 335 3e-91
Ahg916349 jgi|Araly1|916349|Al_scaffold_0008_1100 318 3e-86
> Ahg345842 jgi|Araly1|345842|fgenesh1_pg.C_scaffold_4002184
Length=627
Score = 872 bits (472), Expect = 0.0
Identities = 571/618 (92%), Gaps = 9/618 (1%)
Strand=Plus/Plus
Query 1 ATGGCTACACAAAGCAACAAAGAGGCTTTCTTAGGTGGATTTAAGAAACTCTTGAATGAA 60
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACACAAAGCAACAAAGAGGTTTTCTTAGGTGGATTTAAGAAACTCTTGAATGAA 60
Query 61 CAATGGCAAGCCGATGTACGTCTCAAGGCAGGAGACAGTGATGAGACTACATCTAT-TTT 119
||||||||||||||||||| ||||||||||||||||||||||||| | |||| || |||
Sbjct 61 AAATGGCAAGCCGATGTACGCCTCAAGGCAGGAGACAGTGATGAGAGTGCATCCATCTTT 120
Query 120 CGCCCACAAGCTTGTCTTGGTGGCAAGATCAGAGGTGTTTAAGAAGATATTGGAATCAGA 179
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 121 -GCCCACAAGCTTGTCTTGGTAGCAAGATCAGAGGTGTTTAAGAACATATTGGAATCAGA 179
Query 180 CGAGTTCAAGGCTTCATCTAAACAGATGGAGACAGTCACCCTCTCGGAGATGAAACACGA 239
|||||||||||||||| |||| | | | ||||||||||| ||||||||||||||||||||
Sbjct 180 CGAGTTCAAGGCTTCAGCTAAGCTGGTTGAGACAGTCACTCTCTCGGAGATGAAACACGA 239
Query 240 AGAATTGGAGGCTTTTGTGGAGTTCATCTATAGGGTTGATGGCTCCATTTGTTCTGCTAG 299
|||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 AGAAGTAGAGGCTTTAGTGGAGTTCATCTATAGCGTTGATGGCTCCATTTGTTCTGCTAG 299
Query 300 TCTCAAGAAACATGCTCGTTCACTCTTTCATGCAGCCGACAAATATGAGATTCCGCATCT 359
| |||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 300 TGTCAAGAAACATGCTCGGTCACTCTTTCTTGCAGCCGACAAATATGAGATTCCGCTTCT 359
Query 360 AAGAGACCTATGCAGAAACGAGCTTATATCATCTTTGAATTCGTCGAATGCTCTTAGCAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGAGACCTATGCAGAAACGAGCTTATATCATCTTTGAATTCGTCGAATGCTCTTAGCAT 419
Query 420 CCTTGAGCTCGCCCAAATCCCTTTTGACAAAGCCCTCAATGATCCCGCCTTCACTACTAT 479
||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 420 CCTGGAGCTCGCCCAAATCCCTTTTGACAAAGCCCTCAATGATGCCGCTTTCACTACTAT 479
Query 480 CATAACCAATAT-AAGTACGATTGCTAGTGGTGATGAGTTCAAGCTGTTTGTCGCCAATC 538
|||||||||| || ||| ||||||||| |||||||||||||||||||||||| |||||
Sbjct 480 TTTAACCAATATGAA-TACCATTGCTAGTTGTGATGAGTTCAAGCTGTTTGTCGTCAATC 538
Query 539 ACCCAAATCTTGCCGTGGATATAATGAAGGCTTCTATAACTAGA-CTAAGTACTAGCAGA 597
||||||||||||||||||| ||||||||||||| | ||||| | | ||||| || || |
Sbjct 539 ACCCAAATCTTGCCGTGGAGATAATGAAGGCTTATGTAACTCGTGC-AAGTA-TAACAAA 596
Query 598 AAAATCTGTGGTTACTGT 615
||||| |||||||||||
Sbjct 597 AAAAT--GTGGTTACTGT 612
> Ahg934849 jgi|Araly1|934849|scaffold_402837.1
Length=586
Score = 335 bits (181), Expect = 3e-91
Identities = 401/503 (80%), Gaps = 31/503 (6%)
Strand=Plus/Plus
Query 1 ATGGCTACACAAAGCAACAAAGAGGC-TTTCTTAGGTGGATTTAAG-AAA-CTCTTGAAT 57
||||| ||| ||| ||||||||| || |||| | ||||||||| | ||| | |||||
Sbjct 24 ATGGCAACAGAAACCAACAAAGA-GCTTTTCGTGGGTGGATTT--GCAAAGATTTTGAAA 80
Query 58 GAACAATGGCAAGCCGATGTACGTCTCAAGGCAGGAGACAGTGATGA---GACTACATCT 114
|||||| | |||| |||||||||||| |||||||| ||||||| ||| | | | |||
Sbjct 81 GAACAACGTCAAGTCGATGTACGTCTAAAGGCAGGGGACAGTGGTGAGGGGGGTGCTTCT 140
Query 115 ATTTTC-GCCCACAAGCTTG-TCTTGGT-GGCAAGATCAGAGGTGTTTAAGAAGATATTG 171
| |||| ||||| ||||||| || | || |||||||||||||||||||||||||| |||
Sbjct 141 A-TTTCTGCCCATAAGCTTGTTC-T-GTCTGCAAGATCAGAGGTGTTTAAGAAGATGTTG 197
Query 172 GAATCAGACGAGTTCAAGGCTTCATCTAAACAGATGGAGACAGTCACCCTCTCG-GAGAT 230
|||||||||||| ||||| |||| || ||| | |||||| |||| |||| | |||||
Sbjct 198 GAATCAGACGAGATCAAGACTTCGGCT---CAGCTAGAGACAATCACTCTCT-GTGAGAT 253
Query 231 GAAACACGAAGAATTGGAGGCTTTTGTGGAGTTCATCTATAGGGTTGATGGCTCCAT-TT 289
||||||||||||||| |||||||| | || ||| | |||| | || ||||| || |
Sbjct 254 GAAACACGAAGAATTAGAGGCTTTCCTTGAATTC-T-TATACAG-CGACGGCTCTATGCT 310
Query 290 GTTCTGCTAGTCTCAAGAAACATGCTCGTTCACTCTTTCATGCAGCCGACAAATATGAG- 348
||| | | ||| |||| | | | ||||||| || ||| || |||||||||| |
Sbjct 311 -TTCAGAAAAAGAGAAGCAACACGTTAGGTCACTCTATCTTGCGGCTGACAAATATG-GC 368
Query 349 ATTCCGCATCTAAGAGACCTATGCAGAAACGAGCTTATATCATCT-TTGAATTCGTCGAA 407
|||||||||||| | || |||||||||| |||||||||||||| | || || || || ||
Sbjct 369 ATTCCGCATCTACGGGATCTATGCAGAAGCGAGCTTATATCATATCTT-AACTCTTCAAA 427
Query 408 TGCTCTTAG-CATCCTTGAGCTCGCCCAAATCCCTTTTGACAAAGCCCTCAATGATCCCG 466
||||||| | ||||||||||||||||||||||||||||||| | |||||| ||||| |||
Sbjct 428 TGCTCTT-GACATCCTTGAGCTCGCCCAAATCCCTTTTGACGATGCCCTCCATGATTCCG 486
Query 467 CCTTCACTACTATCATAACCAAT 489
|||||| || |||||||||||||
Sbjct 487 CCTTCAATAATATCATAACCAAT 509
> Ahg916349 jgi|Araly1|916349|Al_scaffold_0008_1100
Length=690
Score = 318 bits (172), Expect = 3e-86
Identities = 400/506 (79%), Gaps = 31/506 (6%)
Strand=Plus/Plus
Query 82 CTCAAGGC-AGGAGACAGTGATGAGACTACATCTATTTTC-GCCCACAAGCTT-GTCTTG 138
|||||||| | || | ||||||||| | || ||| | || |||||||| ||| || ||
Sbjct 82 CTCAAGGCAAAGA-ATAGTGATGAGGGTTCAGCTA-TCTCTGCCCACAAACTTATTC-TG 138
Query 139 GTGGCAAGATCAGAGGTGTTTAAGAAGATATTGGAATCAGACGA-GTTCAAGGCTTC-AT 196
| ||||||| ||||| |||| |||||| ||||||| ||| || ||| ||| |||| |
Sbjct 139 GCATCAAGATCGGAGGTTTTTAGGAAGATGTTGGAATTAGAGGAGGTT-AAGACTTCGA- 196
Query 197 CTAAAC-AGATGGAGACAGTCACCCTCTCGGAGATGAAACACGAAGAATTGGAGGCTTTT 255
| |||| || |||| ||| |||| ||||| || |||||||| ||||| || || || |||
Sbjct 197 CAAAACAAG-TGGAAACAATCACTCTCTCAGATATGAAACAAGAAGAGTTAGAAGCGTTT 255
Query 256 GTGGAGTTCATCTATAGGGTTGATGGCTCCAT-TTGTTCTGCTAGTC-TCAAGA-AACAT 312
|| ||||| | |||| | ||||||| | || | |||||||| | | || | |||||
Sbjct 256 GTTGAGTT--TATATACAG-TGATGGCACAATGCT-TTCTGCTA-ACGTGAA-ACAACAT 309
Query 313 GCTCGTTCACTCTTTCATGCAGCCGACAAATATGAGATTCCGCATCTAAGAGACCTATGC 372
||||| ||||||| || ||| || || ||||| |||||| |||||| |||||||||||
Sbjct 310 GCTCGCTCACTCTATCTTGCGGCTGATAAATACGAGATTATGCATCTTCGAGACCTATGC 369
Query 373 AGAAACGAGCTTATATCATCTTTGAATTCGTCGAATGCTCTTAG-CATCCTTGAGCTCGC 431
|||| | |||||||||| ||| ||| || ||||||| ||||| | | |||||||||||||
Sbjct 370 AGAACCAAGCTTATATCTTCTCTGAGTTTGTCGAATTCTCTT-GACCTCCTTGAGCTCGC 428
Query 432 CCAAATCCCTTTTGACAAAGCCCT-CAATGATCCCGCCTTCACT-ACTATCATAACCAAT 489
|||||||||||||||||||| ||| || ||| | ||||| | | | ||||| || |||
Sbjct 429 CCAAATCCCTTTTGACAAAGTCCTTCAC-GATGCAGCCTTTAGTTA-TATCAAAAAGAAT 486
Query 490 ATAAGTA-CGATTGCTAG-TGGTGATGAGTTCAAGCTGTTTGTCGCCAATCACCCAAATC 547
|||| || |||||||||| | |||||||||||| |||| ||||||| | |||||||||
Sbjct 487 ATAA-TAACGATTGCTAGCTC-TGATGAGTTCAAATTGTTCGTCGCCAGTAACCCAAATC 544
Query 548 TTGCCGTGGATATAATGAAGGCTTCT 573
|| ||||||| |||||||||||||||
Sbjct 545 TTTCCGTGGAGATAATGAAGGCTTCT 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23064364785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5