BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G40470.1

Length=907
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483104 jgi|Araly1|483104|fgenesh2_kg.4__2164__AT2G40470.1        1066    0.0  


> Ahg483104 jgi|Araly1|483104|fgenesh2_kg.4__2164__AT2G40470.1
Length=754

 Score = 1066 bits (577),  Expect = 0.0
 Identities = 650/684 (95%), Gaps = 9/684 (1%)
 Strand=Plus/Plus

Query  182  ATGGCTGGAATTAGAAGACCAATGTCGGGTCCTCCCGGAACCCTCAATACCATTACGCCT  241
            ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct  76   ATGGCAGGAATTAGAAGACCAATGTCGGGTCCTCCCGGAACTCTCAACACCATTACGCCT  135

Query  242  TGTGCTGCCTGCAAGCTTTTGCGCCGTAGATGTGCTCAAGAATGTCCCTTTTCGCCATAT  301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  136  TGTGCTGCCTGCAAGCTTTTGCGCCGTAGATGTGCTCAAGAATGTCCCTTTTCACCATAT  195

Query  302  TTCTCCCCACACGAGCCTCATAAGTTCGCTTCCGTCCACAAAGTCTTTGGAGCTAGTAAC  361
            || |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct  196  TTTTCCCCACACGAGCCTCATAAGTTCGCATCCGTCCACAAAGTCTTTGGAGCTAGCAAC  255

Query  362  GTCTCCAAGATGCTAATGGAAGTACCTGAGAGCCAGAGAGCAGATGCCGCGAATAGCCTT  421
            |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct  256  GTCTCCAAGATGCTAATGGAAGTACCTGAGAGCCAGAGAGCAGACGCCGCAAATAGCCTT  315

Query  422  GTGTATGAAGCAAACGTGAGGCTAAGAGATCCGGTGTACGGATGCATGGGAGCCATCTCA  481
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  316  GTGTATGAAGCAAACGTGAGGCTAAGAGATCCGGTGTACGGATGCATGGGAGCAATCTCA  375

Query  482  GCTCTACAACAACAAGTCCAAGCTTTACAAGCCGAGCTCACGGCCGTAAGATCCGAGATT  541
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  376  GCTCTACAACAACAAGTCCAAGCTTTACAAGCCGAGCTCACGGCCGTAAGATCAGAGATT  435

Query  542  CTTAAGTACAAGCAACGAGAAGCTGTCGCCACTTTGATCGTACCTTCCAACTCCCAAGTT  601
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  436  CTTAAGTACAAGCAACGAGAAGCTGTCGCCACTTTGATCGTACCTTCCAACTCCCAAGTC  495

Query  602  GCCGGATTTCACAACTCCGGCGGTGTTTCCGTCATTGCACCACCACCACAAAGACCAACA  661
            |||||||||||||||||||| || || |||||||||||||||||||| ||||||||| ||
Sbjct  496  GCCGGATTTCACAACTCCGGTGGCGTCTCCGTCATTGCACCACCACCTCAAAGACCATCA  555

Query  662  ACTCCACCACAACCTACAACGGCTCATCCTCCTTCTCCATCTTCTTGTGTTTTCTCTCAA  721
            ||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||
Sbjct  556  ACTCCACCACAACCTACGACGGCTCATCCTCCTCCTCCATCTTCTTGTATTTTATCTCAA  615

Query  722  CCAACCACAAGAGACTTAGAATACGGCAACATTGAAAGTGAGAACAACT---ACTTCGGT  778
            ||||||||||||| ||||||||||||| |||||||||||||||||||||   ||||||||
Sbjct  616  CCAACCACAAGAGCCTTAGAATACGGCGACATTGAAAGTGAGAACAACTCTTACTTCGGT  675

Query  779  TAAATTTTTA-TTGTATCATTCTACAAACACATACAAATACATAtaattaatttatttcg  837
            |||||||| | |||| |||||||||||| ||||||||||||||||||||  |  ||||||
Sbjct  676  TAAATTTT-ACTTGTCTCATTCTACAAATACATACAAATACATATAATT--T--ATTTCG  730

Query  838  ataatttgtgatccggtgactaat  861
            ||||||||||||||||||||||||
Sbjct  731  ATAATTTGTGATCCGGTGACTAAT  754



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33624412794


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5