BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G40475.1

Length=1218
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg934853 jgi|Araly1|934853|scaffold_402841.1                        909    0.0  


> Ahg934853 jgi|Araly1|934853|scaffold_402841.1
Length=619

 Score =  909 bits (492),  Expect = 0.0
 Identities = 562/594 (95%), Gaps = 11/594 (2%)
 Strand=Plus/Plus

Query  338  TCAGAAGACGACTCTAATGGAGTCATATCTTCAAAGATAATCGTCAAGGAGAGCTCTCAG  397
            |||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct  33   TCAGAAGACGACACTAATGGAGTCAGATCTTCAAAGATAATCGTAAAGGAGAGCTCTCAG  92

Query  398  GTCAATTCATCGTCAAGAATCTATTACTACGGCGGAGCCTCCGTGCCTTTTTTATGGGAG  457
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  93   GTCAATTCATCGTCAAGAATCTATTACTACGGCGGAGCCTCCGTGCCATTTTTATGGGAG  152

Query  458  ACACGACCAGGGACACCAAAACA-TGCTCTTTTCTCTGAAT-CATTACGTC-TTCCTCCA  514
            |||| |||||||||||||||||| | ||||||||||||||| | || || | ||||||||
Sbjct  153  ACACAACCAGGGACACCAAAACACT-CTCTTTTCTCTGAATCCCTT-CG-CGTTCCTCCA  209

Query  515  TTAACGCCACCCCCTTCGTATTACTCATCATCTTCCTCCTCCGGGAA-CAAACTGAGTAA  573
            ||||||||||| || |||||||||||||||||| ||||||||||||| || | |||||||
Sbjct  210  TTAACGCCACCTCCGTCGTATTACTCATCATCTCCCTCCTCCGGGAACCATA-TGAGTAA  268

Query  574  AGCGAGAACGATTAAACAAACTCGATTCGTGAAGACTCTGTTGTCACGTCACGTgtcgcg  633
            ||| ||||||   ||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct  269  AGCTAGAACG---AAACAAACTAGATTCGTGAAGACTTTGTTGTCACGTCACGTGTCGCG  325

Query  634  tccttcgttttcttggtcgtctgcgtcttcttcttcttcctcttcgtactcttcctcgtc  693
            |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct  326  TCCTTCGTTTTCTTGGTCGTCTACGTCTTCATCTTCTTCCTCTTCGTACTCTTCCTCGTC  385

Query  694  tcctccatctAAAGTAGAGCATCGTCCGAGAAAATGTTATTCTTGTTCGAGATCGTACGT  753
            ||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  386  TCCTCCATCCAAAGCAGAGCACCGTCCGAGAAAATGTTATTCTTGTTCGAGATCGTACGT  445

Query  754  TAAGGAAGACGACGAGGAAGAGATTGTGTCGTCGTCTCCAACGTCGACGTTGTGTTATAA  813
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  446  TAAGGAAGACGACGAGGAAGAGATTGGGTCGTCGTCTCCAACGTCGACGTTGTGTTATAA  505

Query  814  AAGAGGGTTTAGTTCATCTATGGGGAGTATGAAGAGAGCTTTGTGTTCTGTTCTTAGCCA  873
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  506  AAGAGGGTTTAGTTCATCTATGGGGAGTATGAAAAGAGCTTTGTGTTCTGTTCTTAGCCA  565

Query  874  TGGATCTAGTCGTAAAGATCTTAGATTGATGTAATGGTTTTTCCATGGTGTTCT  927
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  566  TGGATCTAGTCGTAAAGATCTTAGATTGATGTAATGGTTTTTCCATGTTGTTCT  619



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 45480639981


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5