BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40480.1
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483106 jgi|Araly1|483106|fgenesh2_kg.4__2166__AT2G40480.1 2429 0.0
> Ahg483106 jgi|Araly1|483106|fgenesh2_kg.4__2166__AT2G40480.1
Length=1678
Score = 2429 bits (1315), Expect = 0.0
Identities = 1535/1642 (93%), Gaps = 11/1642 (1%)
Strand=Plus/Plus
Query 69 TGGCAGAGGAGCAGCATCAGAATTATCATGTGGCTGAGGCGATTCCGGGTACGCCTGGGA 128
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2 TGGCAGAGGAGCAGCATCAGAATTATCCTGTGGCTGAGGCGATTCCGGGTACGCCTGGGA 61
Query 129 TCCATGATGTCAGGATTCAACCCGGTTCTGAGAATTCCGGGTTCTGTGTTGATCCGGTTG 188
|||| || || ||||| |||||||| |||||||||| |||||||||||||||| ||||||
Sbjct 62 TCCACGAAGTGAGGATCCAACCCGGGTCTGAGAATTTCGGGTTCTGTGTTGATTCGGTTG 121
Query 189 GTGTTTCTAATGTACCTGGAATTAGGAGAGTTGGGTTGAGAGCTGAAATCGATACTTCTC 248
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 122 GTGTTTCTAATGTACCTGGAATTAGGAGAGTTGGTTTGAGAGCTGAAATCGATACTTCTC 181
Query 249 CTCCATTCGGATCGGTTCAGGAGGCGGTGACTCGATTCGGTGGTCGTGGTTATTGGGTTC 308
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 182 CTCCATTCGGGTCGGTTCAGGAGGCGGTGACCCGATTCGGTGGTCGTGGTTATTGGGTTC 241
Query 309 CTTTCAAGCTTGATGACACTTTCAATGGTGAATTTGACATTAAGAGAATGGAGGAGCATG 368
||||||||||||| |||| ||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 242 CTTTCAAGCTTGAAGACAGTTTCAATGGAGAATTTGACATAAAGAGAATGGAAGAGCATG 301
Query 369 CAGCGGAGCTTGAGAAGGATCTGATTGTGAAAGAGCTTGAAACTTTGGATGTTTTAGAAG 428
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 302 CAGCGGAGCTTGAGAAGGATCTGATTGTGAAAGAGCTTGAAACTTTGGATGTTCTGGAAG 361
Query 429 CTCTTGGATCAACCAAAAGGATCGTTGAAGATTTGAAGCGGCAGCTTCAGCAAGAAGCAC 488
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 362 CACTTGGATCAACGAAAAGGATCGTTGAAGATTTGAAGCGGCAGCTTCAGCAAGAAGCCC 421
Query 489 TGAGATGCTCTGACCAACTCAGTTCAGATATCAAAGAGATGAACGATGAGCATTGCCATC 548
|||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGAGATGCACTGAACATCTCAGTTCAGATATCAAAGAGATGAACGATGAGCATTGCCATC 481
Query 549 ACAAT-C----CC-ATGTCATCTCCTGATTTGATCTTGATGGAATTGAAGCAAGCTAAGA 602
||||| | || ||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 482 ACAATCCTATTCCTATGTCATCTCCTGATCTGATCTTGATGGAATTGAAGCAAGCCAAGA 541
Query 603 TGAATCTTGGTAAAACCATGGACAACCTTGTAGTGATCCAGTCCTCTGTTGAATCTCTGA 662
|||||||||||||||||||||| | |||||| ||||||| ||||||||||| ||||| |
Sbjct 542 TGAATCTTGGTAAAACCATGGATGATCTTGTACTGATCCAATCCTCTGTTGAGTCTCTCA 601
Query 663 ATAAGAAAATGAAAGAAGAGAAAGACTTCCTTGAGAAGACACGGGCTAAGCTAACGTATG 722
||||||| ||||| ||||||||||| ||||||||||||||||| || |||||||| ||||
Sbjct 602 ATAAGAAGATGAAGGAAGAGAAAGATTTCCTTGAGAAGACACGAGCGAAGCTAACTTATG 661
Query 723 GGTTTGGTGGACCGGTATCTCTAGCTGAGGAGTTGAGTCGGATTAAGGTAAAACCACAGG 782
||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 662 GGTTTGGAGGACCGGTGTCTCTAGCTGAGGAGCTGAGTCGGATTAAGGTAAAACCACAAG 721
Query 783 TTCAAGATGAACCGTTAAGGGAGCAGGTTAAGATGGTTGCTGAAGCCGATGAAACGGGTT 842
||| ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 722 TTCCAGATGAACCACTAAGGGAACAGGTTAAGATGGTTGCTGAAACCGATGAAACGGGGT 781
Query 843 TAAACCTGCAGAACAAGAACAGTCTGAGAACTGCAGAGATGAGATTGGTTGCTGCTAGGA 902
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 782 TAAACCTGCAGAACAAGAACCGTCTGAGAACTGCAGAGATGAGATTGGTTGCTGCTAGAA 841
Query 903 AAATGGAAGAAGCTGCGAA-AGCAGCGGAAGCACTTGCGATTGCTGAAATTACAATGTTA 961
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 842 AAATGGAAGAAGCTGC-AAGAGCAGCGGAAGCACTTGCGATTGCTGAAATTACAATGTTA 900
Query 962 TCATCCAATGGTGAAAGCCAGGACGATGATTCGGAATTTTGCTTTCCAGAGCCTCCAAGA 1021
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCATCCAACGGTGAAAGCCAAGACGATGATTCGGAATTTTGCTTTCCAGAGCCTCCAAGA 960
Query 1022 TCTCCTGTGACACCAAGAGGACTCAGGATTGATAATGACTTCTCCACGGATAAGAGTTCA 1081
||||| || ||||| |||||||| ||||||||||||||||||||||| ||||| || |||
Sbjct 961 TCTCCCGTAACACCGAGAGGACTAAGGATTGATAATGACTTCTCCACCGATAATAGCTCA 1020
Query 1082 AGACGAGGGATTTTGAAGAAGCTTGAGGAAGCTACTGAAGGAGTTAAACAAAGTAAGCAG 1141
||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1021 AGAAGAGGAATTTTAAAGAAGCTTGAGGAAGCTACCGAAGGAGTTAAACAAAGTAAACAA 1080
Query 1142 GCTTTAGAAGCTGCGTTAAACCGAGTAGAGATCGCTAATGTGAAGCAACTTGCAGCTGAA 1201
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 GCTTTAGAAGCTGCGTTAAACCGAGTAGAGATTGCTAATGTGAAGCAACTTGCAGCTGAA 1140
Query 1202 AATGCTTTCCGCGGGTGGACAAAAGACTCATTGAAAGGCGATAACTTTACACCTTTGAAT 1261
||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1141 AATGCTTTCCGTGGGTGGACAAAAGACTCATCGAAAGGCGATAATTTTACACCTTTGAAT 1200
Query 1262 CATACCCGACGCTCCTTTTTCAGCCATTTGAACAAGCATCACGAGCCACTTGACATTCTC 1321
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1201 CATACCCGACGCTCCTTTTTCAGCCATTTGAACAAGCATCATGAGCCACTTGACAACCTC 1260
Query 1322 CCAAAGCCAGTGTTAAAGTCTAATATCTCAATGCGTGATGTTCTAAGGCGTAAGCAAGTT 1381
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1261 CCAAAGCCAGTGTTGAAGTCTAACGTCTCAATGCGTGATGTTCTAAGGCGTAAGCAAGTT 1320
Query 1382 CCAAAGGAAGATGTTGTTGCTCCCCAAAGACAGAGCCTTGAAGGGCAAATACCGAGGCGA 1441
||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1321 CCAAAGGAAGATGTTGTTGCTCCCCAAAGGCAGAGCCTTGAAGGGCAAATCCCAAGGCGG 1380
Query 1442 AATGTGAATTTGAGCCAAATGTTGAAGGAACTAAAGCAGGATGTGAAGTTTTCGGCACGG 1501
|||| |||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct 1381 AATGCGAATTTGAGCCAAATGTTGAAGGAGTTGAAGCAGGATGTGAAGTTTTCAACACGG 1440
Query 1502 GGAGAGAAAGAGGAGGTACATGAAGAGAAACAGTACGTCACGCAGAGGAGAAAGTTTGGG 1561
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1441 GCCGAGAAAGAGGAGGTACATGAAGAGAAACAGTATGTCACGCAGAGGAGAAAGTTTGGG 1500
Query 1562 TTCATACACATTACACTTCCACTGCAGAAGCAGAGCAAGAAAAAATCCAGCCTTTAAAAA 1621
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTCATACACATTACACTTCCATTGCAGAAGCAGAGCAAGAAAAAATCCAGCCTTTAAAAA 1560
Query 1622 CAA-A-CACCTCCCACTATTTCTATTTTTAGTCCTTATTAATGTGTTTGTAATTGGTTTT 1679
||| | ||||| | ||||||||||||| ||||| |||||| | |||||||||||||||||
Sbjct 1561 CAACAACACCTTCAACTATTTCTATTTCTAGTCATTATTATT-TGTTTGTAATTGGTTTT 1619
Query 1680 CATTTTGGTTTGATATGGTGTT 1701
|||||||||||||| |||||||
Sbjct 1620 CATTTTGGTTTGATGTGGTGTT 1641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66277026300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5