BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40490.1
Length=1490
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934855 jgi|Araly1|934855|scaffold_402843.1 1973 0.0
> Ahg934855 jgi|Araly1|934855|scaffold_402843.1
Length=1225
Score = 1973 bits (1068), Expect = 0.0
Identities = 1175/1227 (96%), Gaps = 6/1227 (0%)
Strand=Plus/Plus
Query 97 TTGTCTCGGGGATCTGAAAAATGTCAATCCTTCAAGtctctacttcgtctctttcttctt 156
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1 TTGTCTCGGGGATCTGAAAAATGTCAATCCTCCAAGTCTCTACTTCATCTCTTTCTTCTT 60
Query 157 ctactcttctctccatatctcccagaaaatctctctcatctACC-AAGTCATGCCGGATA 215
|||||||||||||||| |||||||||||||||||||| ||| || |||||||||||||||
Sbjct 61 CTACTCTTCTCTCCATCTCTCCCAGAAAATCTCTCTCGTCT-CCTAAGTCATGCCGGATA 119
Query 216 GTTCGATGTTCCGTCGAGGGAACTACTGTAACCGAGAGAAAAGTCTCGGCAACCAGCGAG 275
||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 120 GTTCGTTGTTCCGTCGAGGGAACCACTGTAACCGAGCGAAAAATCTCGGCAACCAGCGAG 179
Query 276 CCACTTCTTCTGAGAGCTGTTAAAGGTGAAGTTGTTGATAGACCTCCGGTTTGGCTTATG 335
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CCTCTTCTTCTGAGAGCTGTTAAAGGTGAAGTTGTTGATAGACCTCCGGTTTGGCTTATG 239
Query 336 AGGCAAGCTGGGAGGTACATGAAGAGTTATCAAACTCTCTGTGAGAAGTATCCTTCTTTC 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGGCAAGCTGGGAGGTACATGAAGAGTTATCAAACTCTCTGTGAGAAGTATCCTTCTTTC 299
Query 396 AGAGATAGATCAGAGAATGCAGATCTTGTGGTGGAAATTTCTTTGCAGCCATGGAAGGTG 455
||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 300 CGAGATAGGTCAGAGAATGCGGATCTTGTGGTGGAAATTTCTCTGCAGCCATGGAAGGTG 359
Query 456 TTTAAGCCAGATGGGGTGATTCTGTTCTCAGACATTCTCACTCCATTGTCTGGAATGAAC 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTTAAGCCAGATGGGGTGATTCTGTTCTCAGACATTCTCACTCCATTGTCTGGAATGAAC 419
Query 516 ATACCTTTCGACATTGTTAAAGGAAAAGGTCCTATCATCTTT-AACCCGCCTCAATCAGC 574
|||||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||
Sbjct 420 ATACCTTTCGACATTGTTAAAGGAAAAGGTCCTATCAT-TTTCAACCCGCCACAGTCAGC 478
Query 575 TGCCGACGTTGCTCAAGTTAGAGAATTCGTACCAGAGGAATCTGTTCCTTATGTTGGAGA 634
||||||||||| |||||||||||||||| |||| ||||||||||| ||||||||||||||
Sbjct 479 TGCCGACGTTGATCAAGTTAGAGAATTCATACCTGAGGAATCTGTACCTTATGTTGGAGA 538
Query 635 AGCACTCAGAAGATTAAGAAATGAGGTGAACAATGAAGCCGCTGTTCTGGGATTTGTTGG 694
|||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 539 AGCACTCAAAAGATTAAGAAATGAGGTGAACAACGAAGCTGCTGTTCTGGGTTTTGTTGG 598
Query 695 AGCTCCATTTACACTTTCTTCGTATGTAATCGAAGGTGGCTCATCTAAGAACTTCACACA 754
|||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 599 AGCTCCATTTACTCTTTCTTCGTATGTGATAGAAGGTGGCTCATCTAAGAACTTCACACA 658
Query 755 GATAAAAAGATTAGCTTTTTCTCAACCCAAGGTTCTACATGCCTTACTCCAGAAGTTCAC 814
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 GATAAAAAGATTAGCTTTTTCTCAACCCAAGGTTCTACATGCTTTACTCCAGAAGTTCAC 718
Query 815 AACCTCGATGATAACGTACATACGCTATCAAGCAGATAGCGGAGCTCAAGCTGTGCAAAT 874
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 719 AACCTCGATGATCACGTACATACGTTATCAAGCAGATAGCGGAGCTCAAGCTGTACAAAT 778
Query 875 ATTCGACTCTTGGGCAACCGAGCTTAGCCCGGTGGATTTTGAGGAGTTTAGCTTACCTTA 934
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 ATTCGACTCTTGGGCTACCGAGCTTAGCCCGGTGGATTTTGAAGAGTTTAGCTTACCTTA 838
Query 935 TCTCAAACAGATTGTGGAAGCTGTGAAACAAACTCACCCAAACCTACCTCTCATACTTTA 994
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 839 TCTTAAACAGATTGTGGAAGCTGTGAAACAAACTCACCCAAACCTACCTCTCATACTGTA 898
Query 995 TGCTAGTGGATCAGGAGGTTTGCTAGAGAGACTGGCTCGGACCGGTGTGGATGTTGTGAG 1054
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 899 TGCAAGTGGATCAGGAGGTTTGCTAGAGAGACTGGCTAGAACCGGTGTGGATGTTGTGAG 958
Query 1055 CTTGGACTGGACTGTGGACATGGCTGAAGGAAGAGACCGGCTAGGAAGAGACATAGCAGT 1114
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 959 CTTGGACTGGACTGTAGACATGGCTGAAGGAAGAGACCGGTTAGGAAGAGACATAGCGGT 1018
Query 1115 TCAAGGAAACGTTGATCCGGGAGTTCTATTTGGATCGAAAGAATTTATCACAAGCCGGAT 1174
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1019 TCAAGGAAACGTGGATCCGGGAGTTCTATTTGGATCGAAAGAATTTATCACAAGCAGGAT 1078
Query 1175 TCATGATACTGTGAAGAAAGCTGGGAGAGATAAACACATTCTCAACTTGGGGCATGGTAT 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TCATGATACTGTGAAGAAAGCTGGGAGAGATAAACACATTCTCAACTTGGGGCATGGTAT 1138
Query 1235 TAAAGTTGGAACCCCTGAAGAGAATGTAGCACACTTCTTTGAGGTTGCTCAAGAAATTAG 1294
|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1139 AAAAGTTGGAACCCCTGAAGAGAATGTTGCACACTTCTTTGAGGTTGCTCAAGGAATTAG 1198
Query 1295 ATATTAAGAGAAAGAATGAATG-TGAT 1320
||||||||||||||| | |||| ||||
Sbjct 1199 ATATTAAGAGAAAGAGT-AATGATGAT 1224
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55764118680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5