BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40500.1
Length=888
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934862 jgi|Araly1|934862|scaffold_402850.1 773 0.0
Ahg934856 jgi|Araly1|934856|scaffold_402844.1 767 0.0
Ahg934866 jgi|Araly1|934866|scaffold_402854.1 752 0.0
> Ahg934862 jgi|Araly1|934862|scaffold_402850.1
Length=952
Score = 773 bits (418), Expect = 0.0
Identities = 771/931 (83%), Gaps = 66/931 (7%)
Strand=Plus/Plus
Query 1 ATGGAGAAAC-TTGGCAGAGATGATGAATT-GATTGTGGACGAGTCTTCG-T-T-GAA-A 54
|||||| ||| |||| |||||||||| ||| ||||||||||||||||||| | | |||
Sbjct 21 ATGGAGCAACTTTGG-AGAGATGATG-ATTGGATTGTGGACGAGTCTTCGTTGTCGAAGG 78
Query 55 TCCTTCTCTCTTCTTTGCCAAGGTAACTTCAGTTACGTCTGTCTC-ATGAAGGACTCCAA 113
| | ||| || |||| || ||| | |||| || ||||| |||| | ||||||||| ||
Sbjct 79 T-C-TCT-TC-TCTTGGCGGAGGCAGCTTCGGTCGCGTCTCTCTCGA-GAAGGACTCTAA 133
Query 114 AT-C--TCGACGT-TGCGCAAAGAAGTCATCGCCGATGCAGC-ACAAACAGATTCTCGAG 168
| | |||| | | ||||||||||||||||| |||||| | |||| |||||||||||
Sbjct 134 CTCCGGCCGAC-TCTACGCAAAGAAGTCATCGCGGATGCATCTCCAAA-AGATTCTCGAG 191
Query 169 AAGGAACTCCGGATCATGCATCGTTTCCGTGACCATCATCGCATCGTCCAAGCCTCAAAC 228
||||| ||| ||||||||||||||||||| | |||| ||||||||||||||| ||||||
Sbjct 192 AAGGAGCTCAGGATCATGCATCGTTTCCGCAATCATCCTCGCATCGTCCAAGCTTCAAAC 251
Query 229 AAGTTTCACATACAAATC-AAACCCTCTG-A-A-TGCTACATCTATATGGAGTACGCGTC 284
||| ||||| | |||| | ||||||| || | | ||| |||| | |||||||||||| ||
Sbjct 252 AAGCTTCACTTTCAAA-CAAAACCCTATGAATATTGCAACATTTTTATGGAGTACGCCTC 310
Query 285 CGAAGGTAATCTCCATAAG-TTTATATCTGGTTTGGAAGGA-AAATC-C-G----TACCA 336
| ||||||||||| ||||| ||| |||||||||| || ||||| | | |||||
Sbjct 311 CAAAGGTAATCTCTATAAGATTT-TATCTGGTTT-CCCCGACAAATCACAGCCCATACCA 368
Query 337 GAGTCTTTGGTCCA-ACGCACGGCTCGTATGATCCTAGAAGGACTTGAGGCTCTTCACTC 395
||||||||||| || ||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 369 GAGTCTTTGGT-CAGTCGCGCGGCTCGTATGATCCTAGAAGGACTCGTGGCTCTTCACTC 427
Query 396 CCATGGTTACGTTCACTGCAATCTCAGGCCATCCAACGTTCTCCTCTTCCCGTCCA-AGA 454
||||||||||||||||||| | |||| |||||||||||||||| ||||||| |||| | |
Sbjct 428 CCATGGTTACGTTCACTGCGACCTCAAGCCATCCAACGTTCTCGTCTTCCCTTCCACA-A 486
Query 455 CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGCTCATCCAAGGAACCTGATT 514
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 487 CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGATCATCCAAGGAACCTGATT 546
Query 515 CCGATTATGGTTGGATGTACTTTGGTACGGCGCCTAAGTACATGCCAAT-AGAGTCTTTT 573
| || |||| || |||| | ||||||| | | || ||||||| || || ||||||||||
Sbjct 547 CTGAATATGATTTTATGTCCCTTGGTAC-G-G-CTCAGTACATACC-ATCAGAGTCTTTT 602
Query 574 GGGCCTAAGGGA--G-T-GAT------C--ATCGATCCGAGCCTTGATATATATGCTCTA 621
|| || || ||| | | || | ||||||||| ||||||||||||||||||||
Sbjct 603 GGTCCAAACGGACTGATCAATCCGGGACATATCGATCCGCGCCTTGATATATATGCTCTA 662
Query 622 GGGTGTGTGGTTTATGAGATGCTTGGAGCTATACCTATCCAGGACTACTTTGACGAATAT 681
||||||||||||||||||||| |||||||| |||||| ||||| |||||||| | |||
Sbjct 663 GGGTGTGTGGTTTATGAGATGTTTGGAGCTTTACCTAAGCAGGAGTACTTTGAATATTAT 722
Query 682 TACGAATGGA-ATCTGCGTCGTCATATCTCTCCGGAGGCT-AGAGATTTCTTAAGCCGGT 739
||||| |||| || ||| ||| | |||||||| |||||| | ||||||||| || ||||
Sbjct 723 TACGATTGGATAT-TGCATCGAGAAATCTCTCCAGAGGCTCA-AGATTTCTTGAGGCGGT 780
Query 740 GC-AGTAACATGCATCCACACAGGCCCACCGCGGCATATCTCTTGAACCATCCTTTCATT 798
|| | | |||||||||||||||||||||||||| || | |||||||||||| ||||||||
Sbjct 781 GCCA-TGACATGCATCCACACAGGCCCACCGCGACACAGCTCTTGAACCATTCTTTCATT 839
Query 799 ACTCAAATACTTCCATCGCCAACAACAGAAGACAACAAGGAGATATC---TAGGTCGTTG 855
|| || | ||||||||||||||| | ||||||| ||||||||||||| ||||||||||
Sbjct 840 ACGCAGAGACTTCCATCGCCAACCAGAGAAGACGACAAGGAGATATCAGCTAGGTCGTTG 899
Query 856 ATTCCAAGTTTCTCGAAGCTTCTTTTGGCCT 886
||| ||||| |||| |||||||||||| |||
Sbjct 900 ATTACAAGTGTCTCCAAGCTTCTTTTGACCT 930
> Ahg934856 jgi|Araly1|934856|scaffold_402844.1
Length=952
Score = 767 bits (415), Expect = 0.0
Identities = 769/930 (83%), Gaps = 64/930 (7%)
Strand=Plus/Plus
Query 1 ATGGAGAAACTT-GGCAGAGATGATGAATT-GATTGTGGACGAGTCTTCG-T-T-GAA-A 54
|||||| ||||| || |||||||||| ||| ||||||||||||||||||| | | |||
Sbjct 21 ATGGAGCAACTTCGG-AGAGATGATG-ATTGGATTGTGGACGAGTCTTCGTTGTCGAAGG 78
Query 55 TCCTTCTCTCTTCTTTGCCAAGGTAACTTCAGTTACGTCTGTCTC-ATGAAGGACTCCAA 113
| | ||| || |||| || ||| | |||| || ||||| |||| | ||||||||| ||
Sbjct 79 T-C-TCT-TC-TCTTGGCGGAGGCAGCTTCGGTCGCGTCTCTCTCGA-GAAGGACTCTAA 133
Query 114 AT-C--TCGACGT-TGCGCAAAGAAGTCATCGCCGATGCAGC-ACAAACAGATTCTCGAG 168
| | |||| | | ||||||||||||||||| |||||| | |||| |||||||||||
Sbjct 134 CTCCGGCCGAC-TCTACGCAAAGAAGTCATCGCGGATGCATCTCCAAA-AGATTCTCGAG 191
Query 169 AAGGAACTCCGGATCATGCATCGTTTCCGTGACCATCATCGCATCGTCCAAGCCTCAAAC 228
||||| ||| ||||||||||||||||||| | |||| ||||||||||||||| ||||||
Sbjct 192 AAGGAGCTCAGGATCATGCATCGTTTCCGCAATCATCCTCGCATCGTCCAAGCTTCAAAC 251
Query 229 AAGTTTCACATACAAATC-AAACCCTCTG-A-A-TGCTACATCTATATGGAGTACGCGTC 284
||| ||||| | |||| | ||||||| || | | ||| |||| | |||||||||||| ||
Sbjct 252 AAGCTTCACTTTCAAA-CAAAACCCTATGAATATTGCAACATTTTTATGGAGTACGCCTC 310
Query 285 CGAAGGTAATCTCCATAAG-TTTATATCTGGTTTGGAAGGA-AAATC-C-G----TACCA 336
| ||||||||||| ||||| ||| |||||||||| || ||||| | | |||||
Sbjct 311 CAAAGGTAATCTCTATAAGATTT-TATCTGGTTT-CCCCGACAAATCACAGCCCATACCA 368
Query 337 GAGTCTTTGGTCCA-ACGCACGGCTCGTATGATCCTAGAAGGACTTGAGGCTCTTCACTC 395
||||||||||| || ||| ||||||||||||||||||||||||| | ||||||||||||
Sbjct 369 GAGTCTTTGGT-CAGTCGCGCGGCTCGTATGATCCTAGAAGGACTCGTGGCTCTTCACTC 427
Query 396 CCATGGTTACGTTCACTGCAATCTCAGGCCATCCAACGTTCTCCTCTTCCCGTCCA-AGA 454
||||||||||||||||||| | |||| |||||||||||||||| ||||||| |||| | |
Sbjct 428 CCATGGTTACGTTCACTGCGACCTCAAGCCATCCAACGTTCTCGTCTTCCCTTCCACA-A 486
Query 455 CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGCTCATCCAAGGAACCTGATT 514
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 487 CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGATCATCCAAGGAACCTGATT 546
Query 515 CCGATTATGGTTGGATGTACTTTGGTACGGCGCCTAAGTACATGCCAAT-AGAGTCTTTT 573
| || |||| || |||| | ||||||| | | || ||||||| || || ||||||||||
Sbjct 547 CTGAATATGATTTTATGTCCCTTGGTAC-G-G-CTCAGTACATACC-ATCAGAGTCTTTT 602
Query 574 GGGCCTAAGGGA--G-T-GAT------C--ATCGATCCGAGCCTTGATATATATGCTCTA 621
||||| || ||| | | || | ||||||||| ||||||||||||||||||||
Sbjct 603 GGGCCAAACGGACTGATCAATCCGGGACATATCGATCCGCGCCTTGATATATATGCTCTA 662
Query 622 GGGTGTGTGGTTTATGAGATGCTTGGAGCTATACCTATCCAGGACTACTTTGACGAATAT 681
||||||||||||||||||||| |||||||| |||| | ||||| |||||||| | |||
Sbjct 663 GGGTGTGTGGTTTATGAGATGTTTGGAGCTTTACCGAAGCAGGAGTACTTTGAATATTAT 722
Query 682 TACGAATGGA-ATCTGCGTCGTCATATCTCTCCGGAGGCT-AGAGATTTCTTAAGCCGGT 739
||||| |||| || ||| ||| | ||||| ||||||||| | ||||||||| || ||||
Sbjct 723 TACGATTGGATAT-TGCATCGAGAAATCTCCCCGGAGGCTCA-AGATTTCTTGAGGCGGT 780
Query 740 GCAGTAACATGCATCCACACAGGCCCACCGCGGCATATCTCTTGAACCATCCTTTCATTA 799
|| || ||||||||||||||||||||| |||| || | |||||||||||| |||||||||
Sbjct 781 GCCGTGACATGCATCCACACAGGCCCAACGCGACAGAGCTCTTGAACCATTCTTTCATTA 840
Query 800 CTCAAATACTTCCATCGCCAACAACAGAAGACAACAAGGAGATATC---TAGGTCGTTGA 856
| || | |||||||| |||||| |||||| || ||||||||||||| ||||||||| |
Sbjct 841 CGCAGAGACTTCCATGGCCAACCACAGAAAACGACAAGGAGATATCAGCTAGGTCGTTAA 900
Query 857 TTCCAAGTTTCTCGAAGCTTCTTTTGGCCT 886
|||||||| |||| |||||||||||| |||
Sbjct 901 TTCCAAGTGTCTCCAAGCTTCTTTTGACCT 930
> Ahg934866 jgi|Araly1|934866|scaffold_402854.1
Length=976
Score = 752 bits (407), Expect = 0.0
Identities = 571/649 (88%), Gaps = 16/649 (2%)
Strand=Plus/Plus
Query 249 ACCCTCTGAATGCTACATCTATATGGAGTACGCGTCCGAAGGTAATCTCCATAAGTTTAT 308
|||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 305 ACCCTCTGAATGCTTCATCTATATGGAGTACGCGTCCAAAGGTAATCTCAATAAGTTTAT 364
Query 309 ATCTGGTTT-GGAAGGAAA-ATC---CG-TACCAGAGTCTTTGGTCCA-ACGCACGGCTC 361
|| |||||| | |||||| | | | |||| ||| ||||||| || ||||||||||
Sbjct 365 ATATGGTTTCCGCAGGAAAGAACAAAAGATACCTGAGACTTTGGT-CAGTCGCACGGCTC 423
Query 362 GTATGATCCTAGAAGGACTTGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCA 421
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GTATGATCCTAGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCA 483
Query 422 GGCCATCCAACGTTCTCCTCTTCCCGTCCAAGACTCCTGGAGAGCCGTGGGATCTCAAGC 481
||||||||||||||||||||||| ||||| || |||||||||||||||||||| ||||
Sbjct 484 AACCATCCAACGTTCTCCTCTTCCCTTCCAAAACCCCTGGAGAGCCGTGGGATCTTAAGC 543
Query 482 TTGCTGATTTCGGCTCATCCAAGGAACCTGATTCCGATTATGGTTGGATGTACTTTGGTA 541
||||||| ||||| ||||||||||| ||| || ||||||||| || | |||| ||||||
Sbjct 544 TTGCTGACTTCGGTTCATCCAAGGAGCCTAATACCGATTATGATTCTAAGTACCTTGGTA 603
Query 542 CGGCGCCTAAGTACATGCCAATAGAGTCTTTTGGGCCTAAGGGAGTGATCATCGATCCGA 601
| | | |||||||||||||| |||||||||| ||| || ||| ||||||||||||||
Sbjct 604 C-G-G-CTAAGTACATGCCAGCAGAGTCTTTTCCGCCAAACGGACTGATCATCGATCCGG 660
Query 602 GCCTTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATACCTATCC 661
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 661 GCCTTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATAGCTCTCG 720
Query 662 AGGACTACTTTGACGAATATTACGAATGGAATCTGCGTCGTCATATCTCTCCGGAGGCTA 721
|||| |||||||| |||| |||||| ||| || ||||||| |||||||||||||||||
Sbjct 721 AGGAGTACTTTGAAGAATTTTACGAGTGGCATTTGCGTCGAGTTATCTCTCCGGAGGCTA 780
Query 722 GAGATTTCTTAAGCCGGTGC-AGTAACATGCATCCACACAGGCCCACCGCGGCATATCTC 780
|||||||||| || |||||| || | ||| ||| ||| |||||||||||||||| | |||
Sbjct 781 GAGATTTCTTGAGGCGGTGCCAGGA-CATACATTCACGCAGGCCCACCGCGGCAGAGCTC 839
Query 781 TTGAACCATCCTTTCATTACTCAA-A--TACTTCCATCGCCAACAACAGAAGACAACAAG 837
|||||||||||||||||||| ||| | |||||||||||||||| || ||||||||||||
Sbjct 840 TTGAACCATCCTTTCATTACACAAGAACTACTTCCATCGCCAACCACCGAAGACAACAAG 899
Query 838 GAGATATCTAGGTCGTTGATTCCAAGTTTCTCGAAGCTTCTTTTGGCCT 886
|||||||||||||||||||||||| || ||||||||||||||||| |||
Sbjct 900 GAGATATCTAGGTCGTTGATTCCAGGTGTCTCGAAGCTTCTTTTGACCT 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32900077371
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5