BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40510.1
Length=740
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483116 jgi|Araly1|483116|fgenesh2_kg.4__2176__AT2G40590.1 651 0.0
Ahg902008 jgi|Araly1|902008|Al_scaffold_0004_2658 627 4e-179
Ahg486074 jgi|Araly1|486074|fgenesh2_kg.5__2066__AT3G56340.1 422 2e-117
> Ahg483116 jgi|Araly1|483116|fgenesh2_kg.4__2176__AT2G40590.1
Length=618
Score = 651 bits (352), Expect = 0.0
Identities = 431/467 (92%), Gaps = 13/467 (3%)
Strand=Plus/Plus
Query 29 GTAAACCCTAGCAGC-AG-ACA-CAACA-CGAGTTCA-TCGAGAAG-C-AAGATGACTTT 81
||||||||||||||| || || | ||| |||| || || ||| | |||||||||||
Sbjct 3 GTAAACCCTAGCAGCAAGTCCATCGACATCGAGAACAGAGGAAAAGCCAAAGATGACTTT 62
Query 82 CAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCAATCAGATG 141
|||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 63 CAAGCGTAGGAACGGTGGAAGGAACAAGCACAACAGAGGTCACGTCAAGCCAATCAGATG 122
Query 142 CTCCAACTGTGGCAAATGTTGCCCCAAGGACAAGGCCATTAAGAGGTTCATTGTGAGGAA 201
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 123 CTCCAACTGTGGCAAATGTTGTCCCAAGGATAAGGCCATTAAGAGGTTCATTGTGAGGAA 182
Query 202 CATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAGGGATACAC 261
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 183 CATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTACGAGGGATACAC 242
Query 262 ATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCATGT 321
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 243 GTTACCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCACTCTCACGT 302
Query 322 CGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTTCGTACTCCTCCACCTCGTTTCGCCAG 381
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 303 CGTTAGAGTCCGATCCCGCACCAACCGTAGGGTTCGTACTCCTCCACCTCGTTTCGCCAG 362
Query 382 ACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCACCTCGTCCTGCTGGACC 441
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 363 ACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCCCCTCGTCCAGCTGGACC 422
Query 442 TGGAGCTGCAGCTGCAGCTGCACCGCGTGTCTGAAGCCTTCAAGCAG 488
|||||||||||||||| | | ||||||||||||||| ||| |||
Sbjct 423 TGGAGCTGCAGCTGCA-C--C---GCGTGTCTGAAGCCTGCAATCAG 463
> Ahg902008 jgi|Araly1|902008|Al_scaffold_0004_2658
Length=396
Score = 627 bits (339), Expect = 4e-179
Identities = 369/384 (96%), Gaps = 0/384 (0%)
Strand=Plus/Plus
Query 74 ATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAACCCA 133
|||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 1 ATGACTTTCAAGCGTAGGAACGGTGGAAGGAACAAGCACAACAGAGGTCACGTCAAGCCA 60
Query 134 ATCAGATGCTCCAACTGTGGCAAATGTTGCCCCAAGGACAAGGCCATTAAGAGGTTCATT 193
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 ATCAGATGCTCCAACTGTGGCAAATGTTGTCCCAAGGACAAGGCCATTAAGAGGTTCATT 120
Query 194 GTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCTATGAG 253
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 121 GTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTCCAGGAAGCTAGCGTCTACGAA 180
Query 254 GGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCAC 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGATACACATTGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCTATCCAC 240
Query 314 TCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTTCGTACTCCTCCACCTCGT 373
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 241 TCTCACGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTCCGTACTCCTCCACCGCGT 300
Query 374 TTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCACCTCGTCCT 433
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 TTTGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCCCCTCGTCCA 360
Query 434 GCTGGACCTGGAGCTGCAGCTGCA 457
|||||||| |||||||||||||||
Sbjct 361 GCTGGACCCGGAGCTGCAGCTGCA 384
> Ahg486074 jgi|Araly1|486074|fgenesh2_kg.5__2066__AT3G56340.1
Length=642
Score = 422 bits (228), Expect = 2e-117
Identities = 324/371 (87%), Gaps = 4/371 (1%)
Strand=Plus/Plus
Query 70 CAAGATGACTTTCAAGCGAAGGAACGGTGGGAGGAACAAGCACAACAGAGGACACGTCAA 129
||| |||||||||||||| ||||| ||||| ||||||||||| ||| | || || || ||
Sbjct 94 CAACATGACTTTCAAGCGTAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTGAA 153
Query 130 CCCAATCAGATGCTCCAACTGTGGCAAA-TGTTGCCCCAAGGACAAGGCCATTAAGAGGT 188
|||||||| || ||||||||||| ||| |||||||||||||| ||||| |||||||| |
Sbjct 154 ACCAATCAGGTGTTCCAACTGTGG-AAAGTGTTGCCCCAAGGATAAGGCGATTAAGAGAT 212
Query 189 TCATTGTGAGGAACATTGTGGAGCAGGCTGCTATTAGAGATGTTCAGGAAGCTAGCGTCT 248
|||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 213 TCATCGTCAGGAACATTGTTGAGCAGGCTGCTATTAGAGATGTTCAAGAAGCTAGCGTCT 272
Query 249 ATGAGGGATACACAT-TGCCGAAGCTATATGCAAAGACGCAATACTGTGTCTCCTGTGCT 307
| || | ||||| | | || ||||| || || |||||||||||||||||||| ||||||
Sbjct 273 ACGAAGCTTACAC-TCTCCCAAAGCTTTACGCTAAGACGCAATACTGTGTCTCATGTGCT 331
Query 308 ATCCACTCTCATGTCGTTAGAGTCCGTTCCCGCACCAACCGCAGGGTTCGTACTCCTCCA 367
||||||||||| || ||||||||||| |||||||| ||||| ||||||||||| || |||
Sbjct 332 ATCCACTCTCACGTTGTTAGAGTCCGATCCCGCACTAACCGTAGGGTTCGTACCCCACCA 391
Query 368 CCTCGTTTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGGCAACCAGGACAGGCACCT 427
||||||||||||||||||||||||||||||||||||||||| || || || ||||| |||
Sbjct 392 CCTCGTTTCGCCAGACGCAAGGAGGATACTCCCAAGCCTGGACAGCCTGGTCAGGCTCCT 451
Query 428 CGTCCTGCTGG 438
|| ||||||||
Sbjct 452 CGCCCTGCTGG 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27257885655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5