BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40520.1
Length=1917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934858 jgi|Araly1|934858|scaffold_402846.1 1742 0.0
> Ahg934858 jgi|Araly1|934858|scaffold_402846.1
Length=1594
Score = 1742 bits (943), Expect = 0.0
Identities = 1343/1533 (88%), Gaps = 40/1533 (3%)
Strand=Plus/Plus
Query 157 GTTTTTTGTTCAAATGGCTGATCATAAAGGA-AAGGTTCCAGTCTCTTTATCTGC-ATCC 214
|||| |||||||||||||||||||| || || ||||||||||||||||| ||| | | ||
Sbjct 11 GTTTCTTGTTCAAATGGCTGATCATCAA-GAGAAGGTTCCAGTCTCTTTGTCT-CAAGCC 68
Query 215 TCTTCATCGTTGTCTCTGTCTCCAAAAACAACGCCAATAGAG-GCGGAAGTGTGGTTGAT 273
|| ||||| | ||||||||| |||| |||||||||||||| | | ||| ||||||||||
Sbjct 69 TCGTCATCATCGTCTCTGTCCCCAACAACAACGCCAATAG-GTGAAGAATTGTGGTTGAT 127
Query 274 TGCTGAGGCAAGGGCTCAGGAGATACTATGTGCCATCCAACCTAACTATCTTGCAGAAAG 333
|||||||| |||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 128 TGCTGAGGAAAGGGCTCAGGAGATACTATTTGCCATCCAACCTATGTATCTTTCAGAAAG 187
Query 334 AAGTAGGAATAAGATCATCAGTAATCTCCAGACTCTTCTGTGGGAACGTCTTGGAATTGA 393
| |||||||| ||||||||| | |||||||||||||| || |||||||||||||||||||
Sbjct 188 ATGTAGGAATGAGATCATCAATCATCTCCAGACTCTTATGAGGGAACGTCTTGGAATTGA 247
Query 394 GGTGTATTTATTTGGTTCAATGCCATTAAAAACCTATCTCCCAGATGGAGATATTGATCT 453
||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 248 GGTCTTTTTATTTGGTTCGGTGCCATTAAAAACCTATCTCCCAGATGGAGATATTGATCT 307
Query 454 GACAGTTCTAACTCATCATGCT-TCGGAGGAGGACTGTGCTAGAGCAGTGTGTTGTGTGC 512
|||||||||||||| | ||| | | ||||||||||||||||| |||| || || | | |
Sbjct 308 GACAGTTCTAACTCCTTATGGTAT-GGAGGAGGACTGTGCTAAAGCATTGCGTAATATAC 366
Query 513 TTGAAGCTGAAATGGGA-AATTCAGATCTCCAAGTAACTGGTGTTCAGTATGTCCAAGCA 571
|||||||||||| |||| ||| ||||| |||||||||||| ||| |||||| |||| |||
Sbjct 367 TTGAAGCTGAAAGGGGAGAAT-CAGATTTCCAAGTAACTGATGTCCAGTATATCCATGCA 425
Query 572 AAGGTCAAAGTCATAAAGTGCTCTATCAGGGACGTTGCTTTCGATATCTCCTTCAATCAA 631
||||||| |||||||||||| |||||||| |||||||||| ||||||||||||||||||
Sbjct 426 CAGGTCAAGGTCATAAAGTGCACTATCAGGAACGTTGCTTTGGATATCTCCTTCAATCAA 485
Query 632 TTGGCGGGACTAGGC-GCTTTATGTTTTCTGGAGCAGGTTGACAAAGCTTTTGGTAGAGA 690
||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 486 ATGGCGGGACTAT-CTGCTTTATGTTTTCTGGAGCAGGTTGACCGGGCTTTTGGTAGAGA 544
Query 691 CCATCTGTTCaaaaaaaGCATCATTTTGGTTAAGGCCTGGTGTTTTTATGAAAGCCGTAT 750
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 545 CCATCTGTTCAAACGTAGCATCATTTTGATTAAGGCCTGGTGTTTTTATGAAAGCCGTAT 604
Query 751 TCTCGGTGCCAACTCTGGATTGATTTCGACATATGCATTGGCTATACTCGTCTTGAACAT 810
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 605 TCTCGGTGCCAACACTGGATTGATTTCGACGTATGCATTGGCTATACTCGTCTTGAACAT 664
Query 811 CGTCAACATGTCTTATTCATCACTGTCTGGCCCTTTAGCTGTTCTGTATAAGTTCATAAA 870
|||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| |
Sbjct 665 CGTCAACATGTCTTATTCATCAGTATCTGGCCCTTTAGCTGTACTGTATAAGTTCATGGA 724
Query 871 TTACTATGGATCATTTGATTGGAAGAATTACTGTGTCACGGTCACTGGTCCGGTCCCGAT 930
|| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 725 TTTCTATGGATCATTTGATTGGGAGAATTACTGTATCACGGTCACTGGTCCGGTCCCGAT 784
Query 931 ATCATCTCTTCCAGATATTACTGAAACCGGAAATCATGAAGTGTTCCTAGATGAGAAGTT 990
||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 785 ATCATCTTTTCCAGATATTACGGAAACCAGAAATCATGAAGTTTTCCTAGATGAGAAGTT 844
Query 991 CTTCAGAGAATGCATGGAGTTATATTCTGGGGAAA-CTGGA-GTTGTTGAAGCCAGCAGG 1048
||||||||||||||| |||| |||||| |||| | || | ||||||||||||| ||||
Sbjct 845 CTTCAGAGAATGCATTGAGTCATATTC-GGGGCCAGCTA-ATGTTGTTGAAGCCAACAGG 902
Query 1049 AAATATTTTCCTGTAAAATATTACAACATACTGGATCCTCTGAAACACAGTAACAACCTT 1108
|||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||
Sbjct 903 AAATATTTTCCTGTAAAACATTACAACATACTGGATCCTCTGAAACACAGCAATAACCTT 962
Query 1109 GGACGTAGTGTGACAAAAGGAAATATGGTACGTTTAAGAAATTGTTTTATGCTGGG-AGT 1167
|||||||||||| || |||||||| | ||||||||||| ||||||||| | ||| ||
Sbjct 963 GGACGTAGTGTGTCAGAAGGAAATGCGATACGTTTAAGACATTGTTTTA-GAAGGGGAGC 1021
Query 1168 TCAGAAACTCAGAGATGTGCTTACACTGCCTGGAGAGAACGTGGGTTGGAAACTGGAGAA 1227
|||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 1022 TCAGAAGCTCAGAGATGTGCTTACACTACCTGGAGAGACCGTGGGTTGGAAACTGGAGAA 1081
Query 1228 GTTCTTTAATGTTTCACTGGAGAGGAACGGTAAGGGACAAAGACAAGACGTAGAGGAGCC 1287
|||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CTTCTTTGGTAATTCACTGGACAGGAACGGTAAGGGACAAAGACAAGACGTAGAGGAGCC 1141
Query 1288 TGTCGTCGCGTTTGGCACTGGAGCAGCAGACTACTCTCAA-CTTAAAGGAGATTTTGACA 1346
|||| || |||||||||||||| |||||| |||||| || |||| |||||||||||||
Sbjct 1142 TGTCATCCCGTTTGGCACTGGAAAAGCAGATTACTCT-AATCTTAGAGGAGATTTTGACG 1200
Query 1347 GATACCGCA-ATAATCTTATATACGGGAAGTGGTTTCACGGTGAGAGCCTGCATAACTGG 1405
||||| | || | ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1201 GATACTTCTTATGTT-TTATATACGGGAAGTGGTTTCACAGAGAGAGCCTGCATAACTGG 1259
Query 1406 CTCCCTCCGAGTCTAGACACAACTTCCTGGGCAAA-TATCAGCTTCTATATGAGCAGG-- 1462
|||||| | ||||||||| || |||||||| ||| | || ||| | ||||| || |
Sbjct 1260 ATCCCTCAGGGTCTAGACATAAGTTCCTGGG-AAACTGTCCGCTGGTTTATGA-CAAGCC 1317
Query 1463 GTAAGGAATGGTTTCAATGGGAGGAATCAGGAGGGACCAACATCCATGCCAAATATCAAA 1522
| |||||||| ||||||||||||| ||| ||| ||| | || | || | || ||| |
Sbjct 1318 G-AAGGAATGTTTTCAATGGGAGGTATCTGGATGGAGGATCAAC-AT-C-AAC-ATCGAT 1372
Query 1523 CAGTCACCAAACAATCGGAGATCAAACGGAACAGGCACTTACATTCCTGGAATGAGTAAA 1582
| | | |||||| |||| |||||| |||||||||||||||||||||| |||| || ||
Sbjct 1373 --G-C-C-AAACAAGCGGAAATCAAAAGGAACAGGCACTTACATTCCTGAAATGGGTCAA 1427
Query 1583 CAATCTAACACCGCTGGGTGCAGTAGCAGCAAACCGAGCACGGTGAAGTCATTACCTTCA 1642
|||||| |||||| | ||| |||||||| || |||||||| ||||| ||||||||||||
Sbjct 1428 CAATCTTACACCGGTAGGTCCAGTAGCA--AA-CCGAGCACAGTGAAATCATTACCTTCA 1484
Query 1643 GCATCTGAGACTCAAGAGTCCAAAAAGAATCCT 1675
|||||| ||||||| ||| |||||||||||||
Sbjct 1485 GCATCTCAGACTCATCAGTGCAAAAAGAATCCT 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72028653295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5