BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G40530.1

Length=707
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483109 jgi|Araly1|483109|fgenesh2_kg.4__2169__AT2G40530.1         590    6e-168


> Ahg483109 jgi|Araly1|483109|fgenesh2_kg.4__2169__AT2G40530.1
Length=587

 Score =  590 bits (319),  Expect = 6e-168
 Identities = 452/510 (89%), Gaps = 34/510 (7%)
 Strand=Plus/Plus

Query  13   CTACAATCTCTTCTTGAACCTaaagaaaacaagaagaaagaaaaaaTTCATATAAATTCT  72
            |||||||||||||||||||||||||| ||||||||||||||| || |||||||||| | |
Sbjct  1    CTACAATCTCTTCTTGAACCTAAAGACAACAAGAAGAAAGAATAATTTCATATAAA-T-T  58

Query  73   CTTATATTTTTTCACCTTTATATTGAATGGATGCAACGAAGATTAAGTTTGACGTTATAT  132
             || ||       |     || || ||||||||||| |||||||||||||||||||||||
Sbjct  59   -TT-TA-------A-----AT-TT-AATGGATGCAAGGAAGATTAAGTTTGACGTTATAT  102

Query  133  TACTCTCCTTCTTACTAATTATCTCCGGAATTCCTTCGAATCTTGGGTTGAGTACA-AGT  191
            ||||||| |||||||   || | |||||||||||||| ||||||||| |||||| | |||
Sbjct  103  TACTCTCATTCTTAC---TTCTTTCCGGAATTCCTTCCAATCTTGGGATGAGTA-AGAGT  158

Query  192  GTGAGAGGCACTACTAGATCGGAGCCGGAAGCCTTTCACGGCGGTAAA-TTCCCGGCAAT  250
             ||||||||| ||||||||||||||||||||| ||||| ||||| ||| |||||||||||
Sbjct  159  ATGAGAGGCAATACTAGATCGGAGCCGGAAGCATTTCAAGGCGG-AAACTTCCCGGCAAT  217

Query  251  GAAGATGAGGAAGTTGATGGCACCAAACATGGAAGTTGATTATTCGAGTGACTATTATGA  310
            |||||| ||||||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct  218  GAAGATCAGGAAGTTGATGGCAACAAATATGGAAGTTGATTATTCAAGTGACTATTATGA  277

Query  311  TGGAGGATCATCATCATCA--A-CAACATCACCATCACCTCCAGTGCCTGATTATGATGA  367
            |||||||||||||||||||  | |||||||||||||||| ||||||||||||||||||||
Sbjct  278  TGGAGGATCATCATCATCATCATCAACATCACCATCACCACCAGTGCCTGATTATGATGA  337

Query  368  TATTTATAGAAGGCAAGGTGATGTCCCAAGCCCTGGTATTGGCCACTGATCCATACATGT  427
            |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct  338  TATTTATAGAAGACAAGGTGATGTCCCAAGCCCTGGTATTGGCCACTGATC-ATACATCT  396

Query  428  CATGCGTATATACACACA-C-ATATAGACATTTTGTGTTAAATATATTTATACATACATG  485
            ||||||| |||| ||||| | | ||| |||||||||||||||||| || |||||||||||
Sbjct  397  CATGCGTGTATATACACATCCACATACACATTTTGTGTTAAATAT-TT-ATACATACATG  454

Query  486  TTGTTTATA-ATGTTTTTGTCCTTGGAGGT  514
            ||||||||| ||||||||||||||||||||
Sbjct  455  TTGTTTATATATGTTTTTGTCCTTGGAGGT  484


 Score = 78.7 bits (42),  Expect = 5e-14
 Identities = 47/49 (96%), Gaps = 1/49 (2%)
 Strand=Plus/Plus

Query  617  TTCCTCTTGAATTGTCTCATTTCCTCGTGTTGATGGGAG-TTCATGTAT  664
            ||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct  530  TTCCTATTGAATTGTCTCATTTCCTCGTGTTGATGGGAGCTTCATGTAT  578



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25999829394


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5