BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40540.1
Length=2673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483110 jgi|Araly1|483110|fgenesh2_kg.4__2170__AT2G40540.1 4041 0.0
> Ahg483110 jgi|Araly1|483110|fgenesh2_kg.4__2170__AT2G40540.1
Length=2569
Score = 4041 bits (2188), Expect = 0.0
Identities = 2437/2559 (95%), Gaps = 10/2559 (0%)
Strand=Plus/Plus
Query 122 TCA-CTCC-TACACATCGATTCACGTCATCCACCCAGAAAAATTCATAC-TTCAATTAAA 178
||| |||| |||||||||||||||| || ||||||||||||||||| || || ||| |||
Sbjct 14 TCATCTCCATACACATCGATTCACGACACCCACCCAGAAAAATTCAAACTTTGAATCAAA 73
Query 179 AATTCTCTTTAGCGTGTTAGGCTGAACATT-TA-AG-AACCATGGATCTCAATCTCGGAA 235
|||||| ||||||||||||||||||| ||| | || |||||||||||| ||||||||||
Sbjct 74 AATTCT-TTTAGCGTGTTAGGCTGAAGATTGAAGAGTAACCATGGATCTTAATCTCGGAA 132
Query 236 AATGCTGTGGTTCTCGTTCTTCTAAGAAGGAATCATGGAGGTCGGTTTTGCTTCTTGCTT 295
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 133 AATGCTGTGGTTCTCGTTCTTCTAAGAAGGAATCATGGAGATCGGTTTTGCTTCTTGCTT 192
Query 296 ACCAGAGTCTTGGTGTTGTCTATGGAGACTTGAGTATCTCTCCGCTTTATGTCTTTAAGA 355
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 193 ATCAGAGTCTTGGTGTTGTTTATGGAGACTTGAGTATCTCTCCGCTTTATGTCTTTAAGA 252
Query 356 GCACTTTTGCTGAGGACATTCAACATTCAGAGACCAATGAAGAGATCTACGGTGTTATGT 415
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GCACTTTCGCTGAGGACATTCAACATTCAGAGACCAATGAAGAGATCTACGGTGTTATGT 312
Query 416 CTTTTGTTTTCTGGACTTTAACTTTGGTTCCTTTGCTTAAGTATGTCTTCATTGTCCTCC 475
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CCTTTGTTTTCTGGACTCTAACTTTGGTTCCTTTGCTTAAGTATGTCTTCATTGTCCTCC 372
Query 476 GAGCTGATGATAACGGAGAAGGTGGAACTTTTGCTTTGTACTCATTGATCTGCCGTCATG 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 373 GAGCTGATGATAACGGAGAAGGTGGAACTTTTGCTTTGTACTCATTGATCTGCCGTCACG 432
Query 536 TCAAAGTTAGCCTCCTCCCAAACCGACAAGTCTCTGATGAGGCACTGTCCACTTATAAGC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TCAAAGTTAGCCTCCTCCCAAACCGACAAGTCTCTGATGAGGCACTGTCCACTTATAAGC 492
Query 596 TGGAGCATCCACCGGAGAAGAACCATGACTCGTGTGTGAAAAGATATCTGGAGAAACACA 655
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 493 TGGAGCATCCACCGGAGAAGAACCATGATTCGTGTGTGAAAAGATATCTCGAGAAGCACA 552
Query 656 AGTGGTTACACACTGCTTTGCTGCTTCTTGTTCTTCTTGGGACTTGTATGGTTATTGGAG 715
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 553 AGTGGTTACACACTGCTTTGCTGCTTCTTGTTCTACTTGGGACTTGTATGGTCATTGGAG 612
Query 716 ATGGACTTCTCACTCCAGCTATCTCCGTTTTCTCTGCTGTGTCAGGTCTTGAGCTGAATA 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 ATGGACTTCTCACTCCAGCTATCTCCGTTTTCTCTGCTGTGTCAGGTCTTGAGCTGAATA 672
Query 776 TGTCTAAAGAACATCACCAATATGCAGTAATTCCTATTACCTGCTTCATACTAGTCTGCC 835
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 673 TGTCTAAAGAACATCACCAATATGCAGTAATTCCTATTACCTGCTTCATATTAGTCTGCC 732
Query 836 TTTTCTCGCTTCAGCATTTTGGGACACATCGTGTTGGGTTTGTTTTCGCGCCTATTGTCC 895
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 733 TTTTCCCGCTTCAGCATTTTGGGACTCATCGTGTTGGGTTTGTTTTCGCGCCCATTGTCC 792
Query 896 TCACTTGGCTGCTCTGTATAAGTGGTATTGGCTTGTACAATATAATACAGTGGAATCCTC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TCACTTGGCTGCTCTGTATAAGTGGTATTGGCTTGTACAATATAATACAGTGGAATCCTC 852
Query 956 ATATATACAAAGCTCTTTCTCCTACATACATGTTCATGTTCTTGAGAAAGACGAGAGTAA 1015
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 ATATTTACAAAGCTCTCTCTCCTACATACATGTTCATGTTCTTGAGAAAGACGAGAGTAA 912
Query 1016 GCGGATGGATGTCTCTAGGCGGGAT-CTTGTTGTGCATAACTGGTGCTGAGGCCATGTTT 1074
| ||||||||||||||||||||||| || |||||| ||||||||||||||||||||||||
Sbjct 913 GTGGATGGATGTCTCTAGGCGGGATTCT-GTTGTGTATAACTGGTGCTGAGGCCATGTTT 971
Query 1075 GCTGATCTTGGTCACTTCAATTACGCAGCAATTCAGATTGCGTTTACCTTCCTGGTTTAT 1134
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 972 GCTGATCTTGGTCACTTCAATTATGCAGCAATTCAGATTGCATTTACCTTCCTGGTTTAT 1031
Query 1135 CCGGCTCTTATATTGGCATACATGGGGCAAGCTGCTTACTTATCCCGGCATCACCATTCT 1194
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1032 CCGGCTCTTATATTGGCATACATGGGGCAAGCTGCTTACTTATCCCGCCATCACCATTCT 1091
Query 1195 GCTCATGCAATTGGGTTTTACGTCTCTGTACCAAAATGTTTGCACTGGCCTGTGCTTGCT 1254
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1092 GCTCATGCGATTGGGTTTTACGTCTCTGTGCCAAAATGTTTGCACTGGCCTGTGCTTGCT 1151
Query 1255 GTAGCAATTCTTGCTTCTGTTGTGGGAAGCCAAGCGATCATCAGTGGGACTTTCTCAATC 1314
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1152 GTAGCAATTCTTGCTTCTGTTGTGGGAAGCCAAGCGATCATCAGCGGGACTTTCTCCATT 1211
Query 1315 ATAAACCAGAGCCAGTCTCTCGGATGCTTCCCTCGAGTCAAAGTCATTCACACGTCCGAT 1374
||||| || ||||||||||| ||||| || ||||||||||||||||||||||| ||||||
Sbjct 1212 ATAAATCAAAGCCAGTCTCTTGGATGTTTTCCTCGAGTCAAAGTCATTCACACCTCCGAT 1271
Query 1375 AAGATGCATGGTCAGATTTACATACCGGAGATTAACTGGATGCTCATGATTCTCTGCATC 1434
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1272 AAGATTCATGGTCAGATTTACATACCAGAGATTAACTGGATGCTCATGATTCTCTGCATC 1331
Query 1435 GCTGTTACTATCGGGTTTAGAGATGTCAAACACCTGGGAAATGCATCAGGTTTGGCTGTA 1494
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1332 GCTGTTACTATCGGGTTTAGAGATGTAAAACACCTGGGAAATGCATCAGGTTTGGCTGTA 1391
Query 1495 ATGGCGGTTATGCTAGTGACAACATGTCTTACCTCATTAGTCATTGTTCTTTGCTGGCAC 1554
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1392 ATGGCGGTTATGCTAGTGACGACATGTCTTACCTCATTGGTCATTGTTCTTTGCTGGCAC 1451
Query 1555 AAGCCTCCAATTCTAGCGCTAGCGTTCCTTCTCTTTTTCGGTTCAATAGAACTTCTCTAC 1614
|||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct 1452 AAGCCTCCGATTCTAGCGCTCGCGTTCCTTCTCTTTTTCGGATCAATAGAACTTCTTTAC 1511
Query 1615 TTCTCGGCCTCACTCACCAAATTTCGTGAAGGCGCTTGGCTTCCGATCCTCTTATCTCTA 1674
||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 1512 TTCTCGGCCTCACTCACCAAATTCCGTGAAGGCGCTTGGCTTCCCATCCTATTATCCCTA 1571
Query 1675 ATATTCATGATCATCATGTTCGTTTGGCACTACACCACCATTAAGAAATACGAGTTTGAT 1734
|| ||||||| ||||||||| |||||||| ||||||||||| || |||||||||||||||
Sbjct 1572 ATTTTCATGACCATCATGTTTGTTTGGCATTACACCACCATAAAAAAATACGAGTTTGAT 1631
Query 1735 CTCCAGAATAAAGTCTCGCTTGAATGGCTTCTTGCATTGGGTCCAAGCCTCGGAATTTCT 1794
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1632 CTCCAGAACAAAGTCTCGCTTGAATGGCTTCTTGCACTGGGTCCAAGCCTCGGAATTACT 1691
Query 1795 CGAGTTCCAGGTATCGGTTTAGTCTTCACGGATTTAACCTCTGGAATCCCCGCCAATTTC 1854
||||| || |||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 1692 CGAGTCCCCGGTATCGGTTTAGTCTTCACAGACTTAACCTCCGGAATCCCCGCCAATTTC 1751
Query 1855 TCCCGGTTCGTCACCAACCTCCCTGCCTTCCACCGTGTTCTTGTCTTTGTCTGCGTGAAA 1914
|||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||
Sbjct 1752 TCCCGGTTCGTCACCAACCTCCCTGCTTTCCACCGTGTTCTCGTTTTTGTCTGCGTGAAA 1811
Query 1915 TCTGTCCCTGTCCCGTTCGTTCCACCTGCTGAGAGATACCTCGTGGGTCGTGTTGGTCCC 1974
|||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1812 TCTGTCCCTGTCCCATTTGTTCCGCCTGCTGAGAGATACCTTGTGGGCCGTGTTGGTCCT 1871
Query 1975 GTTGACCACCGCTCTTACAGATGCATCGTTCGGTATGGATACCGTGACGTCCATCAAGAC 2034
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1872 GTTGACCACCGCTCTTACCGCTGCATCGTTCGGTATGGATACCGTGACGTCCATCAAGAC 1931
Query 2035 GTGGACTCATTCGAAACAGAGCTCGTAAGCAAGCTGGCGGATTTCATCCGTTACGATTGG 2094
||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |||
Sbjct 1932 GTGGACTCATTCGAAACCGAGCTCGTGAGCAAGCTTGCGGATTTCATCCGTTACGACTGG 1991
Query 2095 CACAAAAGAACACAACAAGAAGACGACAACGCTCGTTCTGTCCAGTCCAACGAATCCTCA 2154
||||||||||||||||||||||| ||||||||||| || || || |||||||||||||||
Sbjct 1992 CACAAAAGAACACAACAAGAAGAAGACAACGCTCGGTCAGTGCACTCCAACGAATCCTCA 2051
Query 2155 AGCGAGTCAAGACTAGCCGTGATCGGAACAGTAGCTTACGAGATCGAAGACAATCTCCAA 2214
|||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 2052 AGCGAGTCAAGACTGGCCGTGATCGGAACCGTAGCTTACGAAATAGAAGACAATCTCCAA 2111
Query 2215 CCAGAGAGTGTCTCCATCGGATTCTCCACAGTCGAAAGCATGGAAGACGTCATACAAATG 2274
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2112 CCAGAGAGCGTCTCAATCGGATTCTCCACAGTCGAAAGCATGGAAGACGTCATACAAATG 2171
Query 2275 GCCGAACCAGCCCCAACCGCCACCATAAGACGGGTGAGGTTTGCGGTTGAGGAAAACAGT 2334
|| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2172 GCGGAAGCAGCCCCAACCGCCACCATAAGACGGGTGAGGTTTGCACTTGAGGAAAACAGT 2231
Query 2335 TACGAGGACGAAGGATCAACATCGTCAGCAGAAGCAGATGCGGAACTGAGAAGCGAGCTG 2394
|||||||||||||||||| ||||||| ||||| ||||| || ||||||||||||||||||
Sbjct 2232 TACGAGGACGAAGGATCATCATCGTCTGCAGAGGCAGAGGCAGAACTGAGAAGCGAGCTG 2291
Query 2395 AGGGATTTGCTGGCAGCGCAAGAAGCAGGAACTGCGTTTATATTGGGACATTCACATGTG 2454
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||
Sbjct 2292 CGGGATTTGCTGGCAGCGCAAGAAGCAGGGACGGCATTTATATTGGGACATTCACATGTA 2351
Query 2455 AAAGCGAAACAAGGATCATCGGTGATGAAGAGATTAGCAGTTAATTTCGGTTATAATTTC 2514
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2352 AAAGCGAAACAAGGATCATCGGTGATGAAGAGATTGGCAGTTAATTTCGGTTATAATTTC 2411
Query 2515 TTGAGAAGGAACTGTAGAGGACCTGACGTGGCTCTTAAGGTTCCACCTGTTTCTCTTTTA 2574
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2412 TTGAGAAGAAACTGTAGAGGACCTGACGTGGCTCTTAAGGTTCCACCTGTTTCCCTTTTA 2471
Query 2575 GAAGTCGGCATGGTTTATGTTGTTTGACTTATGAAAAAACTAAATATATGAAAACCTAAT 2634
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2472 GAAGTCGGCATGGTTTATGTTGTTTGACTTAT-AAAAAACTAAATATATGAAAACCTAAT 2530
Query 2635 TCCTCTGTTGTAAATTCGTCATGTTTAGCTTCATAGATC 2673
|||||||||||||||||||||||||||||||||||||||
Sbjct 2531 TCCTCTGTTGTAAATTCGTCATGTTTAGCTTCATAGATC 2569
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100824878515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5