BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G40560.1 Length=912 Score E Sequences producing significant alignments: (Bits) Value Ahg934862 jgi|Araly1|934862|scaffold_402850.1 1051 0.0 Ahg934856 jgi|Araly1|934856|scaffold_402844.1 1029 0.0 Ahg934866 jgi|Araly1|934866|scaffold_402854.1 725 0.0 Ahg477739 jgi|Araly1|477739|fgenesh2_kg.3__440__AT3G04715.1 244 7e-64 > Ahg934862 jgi|Araly1|934862|scaffold_402850.1 Length=952 Score = 1051 bits (569), Expect = 0.0 Identities = 810/923 (88%), Gaps = 30/923 (3%) Strand=Plus/Plus Query 6 GATGGAACAAATTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAAGCT 65 |||||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||| | Sbjct 20 GATGGAGCAACTTTGGAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGTCGAAGGT 79 Query 66 CTCTTCTCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACT-C-- 122 ||||||||||||| |||| | ||||||| ||||||||||||||||||||| |||| | Sbjct 80 CTCTTCTCTTGGCGGAGGCAGCTTCGGTCGCGTCTCTCTCGAGAAGGACTCTAACTCCGG 139 Query 123 CCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGCT 182 |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 140 CCGACTCTACGCAAAGAAGTCATCGCGGATGCATCTCCAAAAGATTCTCGAGAAGGAGCT 199 Query 183 CAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTCA 242 ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 200 CAGGATCATGCATCGTTTCCGCAATCATCCTCGCATCGTCCAAGCTTCAAACAAGCTTCA 259 Query 243 CTTACAAATC-CAACCCTACGAATATTGCTACATCTATATGGAGTACGCCTCCAAAGGTA 301 ||| |||| | ||||||| ||||||||| |||| | ||||||||||||||||||||||| Sbjct 260 CTTTCAAA-CAAAACCCTATGAATATTGCAACATTTTTATGGAGTACGCCTCCAAAGGTA 318 Query 302 ATCTCCAT-AGGTTTATATATGGTTTCCGTCG-GAAAGAAGAGCCGATACCTGAGTCTTT 359 ||||| || || ||| ||| |||||||| || ||| | |||| ||||| |||||||| Sbjct 319 ATCTCTATAAGATTT-TATCTGGTTTCC-CCGACAAATCACAGCCCATACCAGAGTCTTT 376 Query 360 GGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACTCGAGGCTCTTCACTCCCATGGTTA 419 |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 377 GGTCAGTCGCGCGGCTCGTATGATCCTAGAAGGACTCGTGGCTCTTCACTCCCATGGTTA 436 Query 420 CGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCTCTTCCCTTCCACAACTCCTGGAGA 479 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 437 CGTTCACTGCGACCTCAAGCCATCCAACGTTCTCGTCTTCCCTTCCACAACTCCTGGAGA 496 Query 480 GCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCATCCAAAGAGCCTGACACCGA-TCATG 538 |||||||||||||||||||||||||||||| |||||||| || ||||| | || | ||| Sbjct 497 GCCGTGGGATCTCAAGCTTGCTGATTTCGGATCATCCAAGGAACCTGATTCTGAAT-ATG 555 Query 539 ATCCTACGTCCCTTGGTACTGTTGAGTACATGCCCCCGGACTCTTTTG-TACCAAACGGA 597 || || |||||||||||| | | ||||||| || | || ||||||| | ||||||||| Sbjct 556 ATTTTATGTCCCTTGGTACGGCTCAGTACATACCATCAGAGTCTTTTGGT-CCAAACGGA 614 Query 598 CTGATCGATCCGGGACATATCGATCCAGC-CCTTGATATATATTCTCTAGGGTGTGTGGT 656 |||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||||| Sbjct 615 CTGATCAATCCGGGACATATCGATCC-GCGCCTTGATATATATGCTCTAGGGTGTGTGGT 673 Query 657 TAATGAGATGTTTGGAGCTATACCTATCCAGGAGTACTTTGACGAATT-TTACGTAT-GG 714 | ||||||||||||||||| |||||| |||||||||||||| | || ||||| || || Sbjct 674 TTATGAGATGTTTGGAGCTTTACCTAAGCAGGAGTACTTTGAATA-TTATTACG-ATTGG 731 Query 715 CAT-TTGCGT-GACGTTATCTCTCC-GCAGGCTCAAGATTTCTTAAGGCGATGCGATGAC 771 || |||| | || | |||||||| | |||||||||||||||| ||||| ||| ||||| Sbjct 732 -ATATTGCATCGA-GAAATCTCTCCAG-AGGCTCAAGATTTCTTGAGGCGGTGCCATGAC 788 Query 772 ATGCGTTCACGCAGGCCCACCGCGACTGAGCTCTTGAAACATCCTTTTATTACACA-AGG 830 |||| | ||| ||||||||||||||| |||||||||| ||| |||| ||||| || || Sbjct 789 ATGCATCCACACAGGCCCACCGCGACACAGCTCTTGAACCATTCTTTCATTACGCAGAG- 847 Query 831 ACTTCCATCGCCAACAACAGAAGACAACAAGGAGATATC---TAGGTCGTTGATTCCAAG 887 ||||||||||||||| | ||||||| ||||||||||||| ||||||||||||| |||| Sbjct 848 ACTTCCATCGCCAACCAGAGAAGACGACAAGGAGATATCAGCTAGGTCGTTGATTACAAG 907 Query 888 TTTCTCGAAGCTTCTTTTGACCT 910 | |||| |||||||||||||||| Sbjct 908 TGTCTCCAAGCTTCTTTTGACCT 930 > Ahg934856 jgi|Araly1|934856|scaffold_402844.1 Length=952 Score = 1029 bits (557), Expect = 0.0 Identities = 805/922 (87%), Gaps = 28/922 (3%) Strand=Plus/Plus Query 6 GATGGAACAAATTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAAGCT 65 |||||| ||| || | |||||||||||||||||||||||||||||||||||| ||||| | Sbjct 20 GATGGAGCAACTTCGGAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGTCGAAGGT 79 Query 66 CTCTTCTCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACT-C-- 122 ||||||||||||| |||| | ||||||| ||||||||||||||||||||| |||| | Sbjct 80 CTCTTCTCTTGGCGGAGGCAGCTTCGGTCGCGTCTCTCTCGAGAAGGACTCTAACTCCGG 139 Query 123 CCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGCT 182 |||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| Sbjct 140 CCGACTCTACGCAAAGAAGTCATCGCGGATGCATCTCCAAAAGATTCTCGAGAAGGAGCT 199 Query 183 CAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTCA 242 ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 200 CAGGATCATGCATCGTTTCCGCAATCATCCTCGCATCGTCCAAGCTTCAAACAAGCTTCA 259 Query 243 CTTACAAATC-CAACCCTACGAATATTGCTACATCTATATGGAGTACGCCTCCAAAGGTA 301 ||| |||| | ||||||| ||||||||| |||| | ||||||||||||||||||||||| Sbjct 260 CTTTCAAA-CAAAACCCTATGAATATTGCAACATTTTTATGGAGTACGCCTCCAAAGGTA 318 Query 302 ATCTCCAT-AGGTTTATATATGGTTTCCGTCG-GAAAGAAGAGCCGATACCTGAGTCTTT 359 ||||| || || ||| ||| |||||||| || ||| | |||| ||||| |||||||| Sbjct 319 ATCTCTATAAGATTT-TATCTGGTTTCC-CCGACAAATCACAGCCCATACCAGAGTCTTT 376 Query 360 GGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACTCGAGGCTCTTCACTCCCATGGTTA 419 |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 377 GGTCAGTCGCGCGGCTCGTATGATCCTAGAAGGACTCGTGGCTCTTCACTCCCATGGTTA 436 Query 420 CGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCTCTTCCCTTCCACAACTCCTGGAGA 479 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 437 CGTTCACTGCGACCTCAAGCCATCCAACGTTCTCGTCTTCCCTTCCACAACTCCTGGAGA 496 Query 480 GCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCATCCAAAGAGCCTGACACCGA-TCATG 538 |||||||||||||||||||||||||||||| |||||||| || ||||| | || | ||| Sbjct 497 GCCGTGGGATCTCAAGCTTGCTGATTTCGGATCATCCAAGGAACCTGATTCTGAAT-ATG 555 Query 539 ATCCTACGTCCCTTGGTACTGTTGAGTACATGCCCCCGGACTCTTTTGTACCAAACGGAC 598 || || |||||||||||| | | ||||||| || | || ||||||| |||||||||| Sbjct 556 ATTTTATGTCCCTTGGTACGGCTCAGTACATACCATCAGAGTCTTTTGGGCCAAACGGAC 615 Query 599 TGATCGATCCGGGACATATCGATCCAGC-CCTTGATATATATTCTCTAGGGTGTGTGGTT 657 ||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||| Sbjct 616 TGATCAATCCGGGACATATCGATCC-GCGCCTTGATATATATGCTCTAGGGTGTGTGGTT 674 Query 658 AATGAGATGTTTGGAGCTATACCTATCCAGGAGTACTTTGACGAATT-TTACGTAT-GGC 715 ||||||||||||||||| |||| | |||||||||||||| | || ||||| || || Sbjct 675 TATGAGATGTTTGGAGCTTTACCGAAGCAGGAGTACTTTGAATA-TTATTACG-ATTGG- 731 Query 716 AT-TTGCGT-GACGTTATCTCTCCGCAGGCTCAAGATTTCTTAAGGCGATGC-GATGACA 772 || |||| | || | ||||| ||| |||||||||||||||| ||||| ||| | ||||| Sbjct 732 ATATTGCATCGA-GAAATCTCCCCGGAGGCTCAAGATTTCTTGAGGCGGTGCCG-TGACA 789 Query 773 TGCGTTCACGCAGGCCCACCGCGACTGAGCTCTTGAAACATCCTTTTATTACACA-AGGA 831 ||| | ||| |||||||| |||||| ||||||||||| ||| |||| ||||| || || | Sbjct 790 TGCATCCACACAGGCCCAACGCGACAGAGCTCTTGAACCATTCTTTCATTACGCAGAG-A 848 Query 832 CTTCCATCGCCAACAACAGAAGACAACAAGGAGATATC---TAGGTCGTTGATTCCAAGT 888 ||||||| |||||| |||||| || ||||||||||||| ||||||||| ||||||||| Sbjct 849 CTTCCATGGCCAACCACAGAAAACGACAAGGAGATATCAGCTAGGTCGTTAATTCCAAGT 908 Query 889 TTCTCGAAGCTTCTTTTGACCT 910 |||| |||||||||||||||| Sbjct 909 GTCTCCAAGCTTCTTTTGACCT 930 > Ahg934866 jgi|Araly1|934866|scaffold_402854.1 Length=976 Score = 725 bits (392), Expect = 0.0 Identities = 568/650 (87%), Gaps = 23/650 (4%) Strand=Plus/Plus Query 268 TGCTACATCTATATGGAGTACGCCTCCAAAGGTAATCTCCATAGGTTTATATATGGTTTC 327 |||| |||||||||||||||||| ||||||||||||||| ||| |||||||||||||||| Sbjct 315 TGCTTCATCTATATGGAGTACGCGTCCAAAGGTAATCTCAATAAGTTTATATATGGTTTC 374 Query 328 CGTC-GGAAAGAAGAGCCGATACCTGAGTCTTTGGTCAGTCGCACGGCTCGTATGATCCT 386 || | |||||||| | |||||||||| ||||||||||||||||||||||||||||||| Sbjct 375 CG-CAGGAAAGAACAAAAGATACCTGAGACTTTGGTCAGTCGCACGGCTCGTATGATCCT 433 Query 387 AGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTTACTGCGACCTCAAGCCATCCAA 446 ||||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||| Sbjct 434 AGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCAAACCATCCAA 493 Query 447 CGTTCTCCTCTTCCCTTCCACAACTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTT 506 |||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| || Sbjct 494 CGTTCTCCTCTTCCCTTCCAAAACCCCTGGAGAGCCGTGGGATCTTAAGCTTGCTGACTT 553 Query 507 CGGTTCATCCAAAGAGCCTGACACCGATCATGATCCTACGTCCCTTGGTACTGTTGAGTA 566 |||||||||||| |||||| | |||||| ||||| ||| || ||||||||| | | |||| Sbjct 554 CGGTTCATCCAAGGAGCCTAATACCGATTATGATTCTAAGTACCTTGGTACGGCTAAGTA 613 Query 567 CATGCCCCCGGACTCTTTTGTACCAAACGGACTGATCGATCCGGGACATATCGATCCAGC 626 |||||| | || |||||| ||||||||||||||| ||| | | | || || Sbjct 614 CATGCCAGCAGAGTCTTTTCCGCCAAACGGACTGATC-ATC-G--A--TC-CGG----GC 662 Query 627 CCTTGATATATATTCTCTAGGGTGTGTGGTTAATGAGATGTTTGGAGCTATACCTATCCA 686 | ||||||||||| ||||||||||||||||| |||||||| ||||||||||| || || | Sbjct 663 C-TTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATAGCTCTCGA 721 Query 687 GGAGTACTTTGACGAATTTTACGTA-TGGCATTTGCGT-GACGTTATCTCTCCGCAGGCT 744 |||||||||||| |||||||||| | |||||||||||| || |||||||||||| ||||| Sbjct 722 GGAGTACTTTGAAGAATTTTACG-AGTGGCATTTGCGTCGA-GTTATCTCTCCGGAGGCT 779 Query 745 CA-AGATTTCTTAAGGCGATGCGATGACATGCGTTCACGCAGGCCCACCGCGACTGAGCT 803 | ||||||||| ||||| ||| | ||||| | ||||||||||||||||||| | ||||| Sbjct 780 -AGAGATTTCTTGAGGCGGTGCCAGGACATACATTCACGCAGGCCCACCGCGGCAGAGCT 838 Query 804 CTTGAAACATCCTTTTATTACACAAGGACT--T-CCATCGCCAACAACAGAAGACAACAA 860 |||||| |||||||| |||||||||| ||| | ||||||||||| || ||||||||||| Sbjct 839 CTTGAACCATCCTTTCATTACACAAGAACTACTTCCATCGCCAACCACCGAAGACAACAA 898 Query 861 GGAGATATCTAGGTCGTTGATTCCAAGTTTCTCGAAGCTTCTTTTGACCT 910 ||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 899 GGAGATATCTAGGTCGTTGATTCCAGGTGTCTCGAAGCTTCTTTTGACCT 948 Score = 294 bits (159), Expect = 6e-79 Identities = 221/250 (88%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 6 GATGGAACAAA-TTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAAGC 64 ||||| | ||| |||||| ||||||||||||||||| |||||||||||| ||||| || | Sbjct 20 GATGG-AGAAACTTTGCAAAGATGATGATTGGATTGAGGACGAGTCTTCATTGAC-AA-C 76 Query 65 TCTCT-TC-TCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACTC 122 || | || |||| ||| ||| |||||| ||||||| | |||| || |||||||||| || Sbjct 77 CCTATCTCTTCTTTGCCAAGGCAACTTCAGTTACGTGTGTCTCAAGGAGGACTCCAAATC 136 Query 123 CCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGCT 182 ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 137 TCGACTTTGCGCAAAGAAGGCATCGCCGATGCATCACAAAAAGATTCTCGAGAAGGAGCT 196 Query 183 CAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTCA 242 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 197 CAGGATCATGCATCGTTTCCGTGACCACCCTCGCATCGTCCAAGCCTCAAACAAGCTTCA 256 Query 243 C-TT-ACAAA 250 | || ||||| Sbjct 257 CCTTCACAAA 266 > Ahg477739 jgi|Araly1|477739|fgenesh2_kg.3__440__AT3G04715.1 Length=779 Score = 244 bits (132), Expect = 7e-64 Identities = 295/371 (80%), Gaps = 22/371 (6%) Strand=Plus/Plus Query 163 AAGATTCTCGAGAAGGAGCTCAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTC 222 |||| ||||||||| ||||| || ||||||| | ||||||| ||||||||||||||||| Sbjct 24 AAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTTTCCGCAATCATCCTCGCATCGTC 83 Query 223 CAAGCCTCAA-ACAAG--CTTCACTTACAAATCCAACCCTACGAATATTGCTACATCTAT 279 ||||| |||| | | |||||||| ||||||||| | | || | | |||||||| Sbjct 84 CAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAACCCGAAGGAT-GT-C-ACATCTAT 140 Query 280 ATGGAGTACGCCTCCAAAGGTAATCTC--C-ATA-GGTTTATATATGGTTTCCGTCGGAA 335 ||||||| ||||||||||| | |||| | ||| | | | | | |||| ||| || Sbjct 141 ATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCTCCA-A--GTTT-CGT-GG-- 193 Query 336 AGAAGAGCCGATACCTGAGTCTTTGGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACT 395 ||| | || || |||||| | || ||| || | |||| ||||||| || ||||||| Sbjct 194 -GAA-A-CCAATGCCTGAGAATATGATCAAACGTGCCGCTCTTATGATCATACAAGGACT 250 Query 396 CGAGGCTCTTCACTCCCATGGTTACGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCT 455 || ||||||||||| || || |||||| ||||||||||||||||| ||||||| ||| | Sbjct 251 TGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCAACGTCCTCGT 310 Query 456 CTTCCCTTCCACAA-CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCAT 514 |||||||||||||| || | |||||||| ||||||||||||||||||||||||||||||| Sbjct 311 CTTCCCTTCCACAACCTTC-GGAGAGCCATGGGATCTCAAGCTTGCTGATTTCGGTTCAT 369 Query 515 CCAAAGAGCCT 525 | ||||||||| Sbjct 370 CTAAAGAGCCT 380 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33815027379 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5