BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40560.1
Length=912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg934862 jgi|Araly1|934862|scaffold_402850.1 1051 0.0
Ahg934856 jgi|Araly1|934856|scaffold_402844.1 1029 0.0
Ahg934866 jgi|Araly1|934866|scaffold_402854.1 725 0.0
Ahg477739 jgi|Araly1|477739|fgenesh2_kg.3__440__AT3G04715.1 244 7e-64
> Ahg934862 jgi|Araly1|934862|scaffold_402850.1
Length=952
Score = 1051 bits (569), Expect = 0.0
Identities = 810/923 (88%), Gaps = 30/923 (3%)
Strand=Plus/Plus
Query 6 GATGGAACAAATTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAAGCT 65
|||||| ||| |||| |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 20 GATGGAGCAACTTTGGAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGTCGAAGGT 79
Query 66 CTCTTCTCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACT-C-- 122
||||||||||||| |||| | ||||||| ||||||||||||||||||||| |||| |
Sbjct 80 CTCTTCTCTTGGCGGAGGCAGCTTCGGTCGCGTCTCTCTCGAGAAGGACTCTAACTCCGG 139
Query 123 CCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGCT 182
|||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 140 CCGACTCTACGCAAAGAAGTCATCGCGGATGCATCTCCAAAAGATTCTCGAGAAGGAGCT 199
Query 183 CAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTCA 242
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 200 CAGGATCATGCATCGTTTCCGCAATCATCCTCGCATCGTCCAAGCTTCAAACAAGCTTCA 259
Query 243 CTTACAAATC-CAACCCTACGAATATTGCTACATCTATATGGAGTACGCCTCCAAAGGTA 301
||| |||| | ||||||| ||||||||| |||| | |||||||||||||||||||||||
Sbjct 260 CTTTCAAA-CAAAACCCTATGAATATTGCAACATTTTTATGGAGTACGCCTCCAAAGGTA 318
Query 302 ATCTCCAT-AGGTTTATATATGGTTTCCGTCG-GAAAGAAGAGCCGATACCTGAGTCTTT 359
||||| || || ||| ||| |||||||| || ||| | |||| ||||| ||||||||
Sbjct 319 ATCTCTATAAGATTT-TATCTGGTTTCC-CCGACAAATCACAGCCCATACCAGAGTCTTT 376
Query 360 GGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACTCGAGGCTCTTCACTCCCATGGTTA 419
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 377 GGTCAGTCGCGCGGCTCGTATGATCCTAGAAGGACTCGTGGCTCTTCACTCCCATGGTTA 436
Query 420 CGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCTCTTCCCTTCCACAACTCCTGGAGA 479
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 437 CGTTCACTGCGACCTCAAGCCATCCAACGTTCTCGTCTTCCCTTCCACAACTCCTGGAGA 496
Query 480 GCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCATCCAAAGAGCCTGACACCGA-TCATG 538
|||||||||||||||||||||||||||||| |||||||| || ||||| | || | |||
Sbjct 497 GCCGTGGGATCTCAAGCTTGCTGATTTCGGATCATCCAAGGAACCTGATTCTGAAT-ATG 555
Query 539 ATCCTACGTCCCTTGGTACTGTTGAGTACATGCCCCCGGACTCTTTTG-TACCAAACGGA 597
|| || |||||||||||| | | ||||||| || | || ||||||| | |||||||||
Sbjct 556 ATTTTATGTCCCTTGGTACGGCTCAGTACATACCATCAGAGTCTTTTGGT-CCAAACGGA 614
Query 598 CTGATCGATCCGGGACATATCGATCCAGC-CCTTGATATATATTCTCTAGGGTGTGTGGT 656
|||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||
Sbjct 615 CTGATCAATCCGGGACATATCGATCC-GCGCCTTGATATATATGCTCTAGGGTGTGTGGT 673
Query 657 TAATGAGATGTTTGGAGCTATACCTATCCAGGAGTACTTTGACGAATT-TTACGTAT-GG 714
| ||||||||||||||||| |||||| |||||||||||||| | || ||||| || ||
Sbjct 674 TTATGAGATGTTTGGAGCTTTACCTAAGCAGGAGTACTTTGAATA-TTATTACG-ATTGG 731
Query 715 CAT-TTGCGT-GACGTTATCTCTCC-GCAGGCTCAAGATTTCTTAAGGCGATGCGATGAC 771
|| |||| | || | |||||||| | |||||||||||||||| ||||| ||| |||||
Sbjct 732 -ATATTGCATCGA-GAAATCTCTCCAG-AGGCTCAAGATTTCTTGAGGCGGTGCCATGAC 788
Query 772 ATGCGTTCACGCAGGCCCACCGCGACTGAGCTCTTGAAACATCCTTTTATTACACA-AGG 830
|||| | ||| ||||||||||||||| |||||||||| ||| |||| ||||| || ||
Sbjct 789 ATGCATCCACACAGGCCCACCGCGACACAGCTCTTGAACCATTCTTTCATTACGCAGAG- 847
Query 831 ACTTCCATCGCCAACAACAGAAGACAACAAGGAGATATC---TAGGTCGTTGATTCCAAG 887
||||||||||||||| | ||||||| ||||||||||||| ||||||||||||| ||||
Sbjct 848 ACTTCCATCGCCAACCAGAGAAGACGACAAGGAGATATCAGCTAGGTCGTTGATTACAAG 907
Query 888 TTTCTCGAAGCTTCTTTTGACCT 910
| |||| ||||||||||||||||
Sbjct 908 TGTCTCCAAGCTTCTTTTGACCT 930
> Ahg934856 jgi|Araly1|934856|scaffold_402844.1
Length=952
Score = 1029 bits (557), Expect = 0.0
Identities = 805/922 (87%), Gaps = 28/922 (3%)
Strand=Plus/Plus
Query 6 GATGGAACAAATTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAAGCT 65
|||||| ||| || | |||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 20 GATGGAGCAACTTCGGAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGTCGAAGGT 79
Query 66 CTCTTCTCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACT-C-- 122
||||||||||||| |||| | ||||||| ||||||||||||||||||||| |||| |
Sbjct 80 CTCTTCTCTTGGCGGAGGCAGCTTCGGTCGCGTCTCTCTCGAGAAGGACTCTAACTCCGG 139
Query 123 CCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGCT 182
|||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 140 CCGACTCTACGCAAAGAAGTCATCGCGGATGCATCTCCAAAAGATTCTCGAGAAGGAGCT 199
Query 183 CAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTCA 242
||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 200 CAGGATCATGCATCGTTTCCGCAATCATCCTCGCATCGTCCAAGCTTCAAACAAGCTTCA 259
Query 243 CTTACAAATC-CAACCCTACGAATATTGCTACATCTATATGGAGTACGCCTCCAAAGGTA 301
||| |||| | ||||||| ||||||||| |||| | |||||||||||||||||||||||
Sbjct 260 CTTTCAAA-CAAAACCCTATGAATATTGCAACATTTTTATGGAGTACGCCTCCAAAGGTA 318
Query 302 ATCTCCAT-AGGTTTATATATGGTTTCCGTCG-GAAAGAAGAGCCGATACCTGAGTCTTT 359
||||| || || ||| ||| |||||||| || ||| | |||| ||||| ||||||||
Sbjct 319 ATCTCTATAAGATTT-TATCTGGTTTCC-CCGACAAATCACAGCCCATACCAGAGTCTTT 376
Query 360 GGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACTCGAGGCTCTTCACTCCCATGGTTA 419
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 377 GGTCAGTCGCGCGGCTCGTATGATCCTAGAAGGACTCGTGGCTCTTCACTCCCATGGTTA 436
Query 420 CGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCTCTTCCCTTCCACAACTCCTGGAGA 479
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 437 CGTTCACTGCGACCTCAAGCCATCCAACGTTCTCGTCTTCCCTTCCACAACTCCTGGAGA 496
Query 480 GCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCATCCAAAGAGCCTGACACCGA-TCATG 538
|||||||||||||||||||||||||||||| |||||||| || ||||| | || | |||
Sbjct 497 GCCGTGGGATCTCAAGCTTGCTGATTTCGGATCATCCAAGGAACCTGATTCTGAAT-ATG 555
Query 539 ATCCTACGTCCCTTGGTACTGTTGAGTACATGCCCCCGGACTCTTTTGTACCAAACGGAC 598
|| || |||||||||||| | | ||||||| || | || ||||||| ||||||||||
Sbjct 556 ATTTTATGTCCCTTGGTACGGCTCAGTACATACCATCAGAGTCTTTTGGGCCAAACGGAC 615
Query 599 TGATCGATCCGGGACATATCGATCCAGC-CCTTGATATATATTCTCTAGGGTGTGTGGTT 657
||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||||||
Sbjct 616 TGATCAATCCGGGACATATCGATCC-GCGCCTTGATATATATGCTCTAGGGTGTGTGGTT 674
Query 658 AATGAGATGTTTGGAGCTATACCTATCCAGGAGTACTTTGACGAATT-TTACGTAT-GGC 715
||||||||||||||||| |||| | |||||||||||||| | || ||||| || ||
Sbjct 675 TATGAGATGTTTGGAGCTTTACCGAAGCAGGAGTACTTTGAATA-TTATTACG-ATTGG- 731
Query 716 AT-TTGCGT-GACGTTATCTCTCCGCAGGCTCAAGATTTCTTAAGGCGATGC-GATGACA 772
|| |||| | || | ||||| ||| |||||||||||||||| ||||| ||| | |||||
Sbjct 732 ATATTGCATCGA-GAAATCTCCCCGGAGGCTCAAGATTTCTTGAGGCGGTGCCG-TGACA 789
Query 773 TGCGTTCACGCAGGCCCACCGCGACTGAGCTCTTGAAACATCCTTTTATTACACA-AGGA 831
||| | ||| |||||||| |||||| ||||||||||| ||| |||| ||||| || || |
Sbjct 790 TGCATCCACACAGGCCCAACGCGACAGAGCTCTTGAACCATTCTTTCATTACGCAGAG-A 848
Query 832 CTTCCATCGCCAACAACAGAAGACAACAAGGAGATATC---TAGGTCGTTGATTCCAAGT 888
||||||| |||||| |||||| || ||||||||||||| ||||||||| |||||||||
Sbjct 849 CTTCCATGGCCAACCACAGAAAACGACAAGGAGATATCAGCTAGGTCGTTAATTCCAAGT 908
Query 889 TTCTCGAAGCTTCTTTTGACCT 910
|||| ||||||||||||||||
Sbjct 909 GTCTCCAAGCTTCTTTTGACCT 930
> Ahg934866 jgi|Araly1|934866|scaffold_402854.1
Length=976
Score = 725 bits (392), Expect = 0.0
Identities = 568/650 (87%), Gaps = 23/650 (4%)
Strand=Plus/Plus
Query 268 TGCTACATCTATATGGAGTACGCCTCCAAAGGTAATCTCCATAGGTTTATATATGGTTTC 327
|||| |||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||
Sbjct 315 TGCTTCATCTATATGGAGTACGCGTCCAAAGGTAATCTCAATAAGTTTATATATGGTTTC 374
Query 328 CGTC-GGAAAGAAGAGCCGATACCTGAGTCTTTGGTCAGTCGCACGGCTCGTATGATCCT 386
|| | |||||||| | |||||||||| |||||||||||||||||||||||||||||||
Sbjct 375 CG-CAGGAAAGAACAAAAGATACCTGAGACTTTGGTCAGTCGCACGGCTCGTATGATCCT 433
Query 387 AGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTTACTGCGACCTCAAGCCATCCAA 446
||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||
Sbjct 434 AGAAGGACTCGAGGCTCTTCACTCCCATGGTTACGTTCACTGCAATCTCAAACCATCCAA 493
Query 447 CGTTCTCCTCTTCCCTTCCACAACTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTT 506
|||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||| ||
Sbjct 494 CGTTCTCCTCTTCCCTTCCAAAACCCCTGGAGAGCCGTGGGATCTTAAGCTTGCTGACTT 553
Query 507 CGGTTCATCCAAAGAGCCTGACACCGATCATGATCCTACGTCCCTTGGTACTGTTGAGTA 566
|||||||||||| |||||| | |||||| ||||| ||| || ||||||||| | | ||||
Sbjct 554 CGGTTCATCCAAGGAGCCTAATACCGATTATGATTCTAAGTACCTTGGTACGGCTAAGTA 613
Query 567 CATGCCCCCGGACTCTTTTGTACCAAACGGACTGATCGATCCGGGACATATCGATCCAGC 626
|||||| | || |||||| ||||||||||||||| ||| | | | || ||
Sbjct 614 CATGCCAGCAGAGTCTTTTCCGCCAAACGGACTGATC-ATC-G--A--TC-CGG----GC 662
Query 627 CCTTGATATATATTCTCTAGGGTGTGTGGTTAATGAGATGTTTGGAGCTATACCTATCCA 686
| ||||||||||| ||||||||||||||||| |||||||| ||||||||||| || || |
Sbjct 663 C-TTGATATATATGCTCTAGGGTGTGTGGTTTATGAGATGCTTGGAGCTATAGCTCTCGA 721
Query 687 GGAGTACTTTGACGAATTTTACGTA-TGGCATTTGCGT-GACGTTATCTCTCCGCAGGCT 744
|||||||||||| |||||||||| | |||||||||||| || |||||||||||| |||||
Sbjct 722 GGAGTACTTTGAAGAATTTTACG-AGTGGCATTTGCGTCGA-GTTATCTCTCCGGAGGCT 779
Query 745 CA-AGATTTCTTAAGGCGATGCGATGACATGCGTTCACGCAGGCCCACCGCGACTGAGCT 803
| ||||||||| ||||| ||| | ||||| | ||||||||||||||||||| | |||||
Sbjct 780 -AGAGATTTCTTGAGGCGGTGCCAGGACATACATTCACGCAGGCCCACCGCGGCAGAGCT 838
Query 804 CTTGAAACATCCTTTTATTACACAAGGACT--T-CCATCGCCAACAACAGAAGACAACAA 860
|||||| |||||||| |||||||||| ||| | ||||||||||| || |||||||||||
Sbjct 839 CTTGAACCATCCTTTCATTACACAAGAACTACTTCCATCGCCAACCACCGAAGACAACAA 898
Query 861 GGAGATATCTAGGTCGTTGATTCCAAGTTTCTCGAAGCTTCTTTTGACCT 910
||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 899 GGAGATATCTAGGTCGTTGATTCCAGGTGTCTCGAAGCTTCTTTTGACCT 948
Score = 294 bits (159), Expect = 6e-79
Identities = 221/250 (88%), Gaps = 8/250 (3%)
Strand=Plus/Plus
Query 6 GATGGAACAAA-TTTGCAGAGATGATGATTGGATTGTGGACGAGTCTTCGTTGACGAAGC 64
||||| | ||| |||||| ||||||||||||||||| |||||||||||| ||||| || |
Sbjct 20 GATGG-AGAAACTTTGCAAAGATGATGATTGGATTGAGGACGAGTCTTCATTGAC-AA-C 76
Query 65 TCTCT-TC-TCTTGGCCGAGGGAACTTCGGTTACGTCTCTCTCGAGAAGGACTCCAACTC 122
|| | || |||| ||| ||| |||||| ||||||| | |||| || |||||||||| ||
Sbjct 77 CCTATCTCTTCTTTGCCAAGGCAACTTCAGTTACGTGTGTCTCAAGGAGGACTCCAAATC 136
Query 123 CCGACTTTACGCAAAGAAGTCATCGCCGATGCATCTCAAAAAGATTCTCGAGAAGGAGCT 182
||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 137 TCGACTTTGCGCAAAGAAGGCATCGCCGATGCATCACAAAAAGATTCTCGAGAAGGAGCT 196
Query 183 CAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTCCAAGCCTCAAACAAGCTTCA 242
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 197 CAGGATCATGCATCGTTTCCGTGACCACCCTCGCATCGTCCAAGCCTCAAACAAGCTTCA 256
Query 243 C-TT-ACAAA 250
| || |||||
Sbjct 257 CCTTCACAAA 266
> Ahg477739 jgi|Araly1|477739|fgenesh2_kg.3__440__AT3G04715.1
Length=779
Score = 244 bits (132), Expect = 7e-64
Identities = 295/371 (80%), Gaps = 22/371 (6%)
Strand=Plus/Plus
Query 163 AAGATTCTCGAGAAGGAGCTCAGGATCATGCATCGTTTCCGTGATCATCCTCGCATCGTC 222
|||| ||||||||| ||||| || ||||||| | ||||||| |||||||||||||||||
Sbjct 24 AAGAATCTCGAGAAAGAGCTTAGCATCATGCTTTGTTTCCGCAATCATCCTCGCATCGTC 83
Query 223 CAAGCCTCAA-ACAAG--CTTCACTTACAAATCCAACCCTACGAATATTGCTACATCTAT 279
||||| |||| | | |||||||| ||||||||| | | || | | ||||||||
Sbjct 84 CAAGCGTCAAGCCCTGTTGTTCACTTAGGGATCCAACCCGAAGGAT-GT-C-ACATCTAT 140
Query 280 ATGGAGTACGCCTCCAAAGGTAATCTC--C-ATA-GGTTTATATATGGTTTCCGTCGGAA 335
||||||| ||||||||||| | |||| | ||| | | | | | |||| ||| ||
Sbjct 141 ATGGAGTTTGCCTCCAAAGGCACTCTCTTCAATATGATCTCCA-A--GTTT-CGT-GG-- 193
Query 336 AGAAGAGCCGATACCTGAGTCTTTGGTCAGTCGCACGGCTCGTATGATCCTAGAAGGACT 395
||| | || || |||||| | || ||| || | |||| ||||||| || |||||||
Sbjct 194 -GAA-A-CCAATGCCTGAGAATATGATCAAACGTGCCGCTCTTATGATCATACAAGGACT 250
Query 396 CGAGGCTCTTCACTCCCATGGTTACGTTTACTGCGACCTCAAGCCATCCAACGTTCTCCT 455
|| ||||||||||| || || |||||| ||||||||||||||||| ||||||| ||| |
Sbjct 251 TGACGCTCTTCACTCACACGGCTACGTTCACTGCGACCTCAAGCCAGCCAACGTCCTCGT 310
Query 456 CTTCCCTTCCACAA-CTCCTGGAGAGCCGTGGGATCTCAAGCTTGCTGATTTCGGTTCAT 514
|||||||||||||| || | |||||||| |||||||||||||||||||||||||||||||
Sbjct 311 CTTCCCTTCCACAACCTTC-GGAGAGCCATGGGATCTCAAGCTTGCTGATTTCGGTTCAT 369
Query 515 CCAAAGAGCCT 525
| |||||||||
Sbjct 370 CTAAAGAGCCT 380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33815027379
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5