BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G40570.1
Length=2001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483113 jgi|Araly1|483113|fgenesh2_kg.4__2173__AT2G40570.1 2483 0.0
> Ahg483113 jgi|Araly1|483113|fgenesh2_kg.4__2173__AT2G40570.1
Length=1665
Score = 2483 bits (1344), Expect = 0.0
Identities = 1511/1592 (95%), Gaps = 9/1592 (1%)
Strand=Plus/Plus
Query 227 AAACAATGGGTGCAAAATCAGAAGAGCCGATGATGACAACAAGAGATAGTATATACAGAG 286
||||||||| |||||| |||||||| |||| ||| |||||||||| ||||| |||||||
Sbjct 80 AAACAATGGTTGCAAACTCAGAAGAACCGACAATGGCAACAAGAGACAGTATTTACAGAG 139
Query 287 CTGCAAGGAA-TATAAAACGACGAGACAACAGTCTCTACAACGCTCTTCGATCTATCTAC 345
|||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CTGCAA-GAAGTATAAAGCGACGAGACAACAGTCTCTACAACGCTCTTCGATCTATCTAC 198
Query 346 CAAGACTCCATCTTCGTCCACGAGATCTCTCTGCTTTGGCCTAAACTTCCTCTCGTTGCA 405
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 199 CAAGACTCCATCTTCGTCCACGAGATCTCTCAGCTTTGGCCTAAACTTCCTCTCGTTGCA 258
Query 406 AACCTTCGTTGTGGTCTCTGGTACTCTGA-AAAGTTCGACGCCACTTGCTACTTCAAATC 464
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 259 AACCTTCGTTGTGGTCTCTGGTACTCTCCCAAA-TTCGACGCCACTTGCTACTTCAAATC 317
Query 465 CACCGATGGTCATACCAATAATTTGTCCTTTAACACTTCTCGTCTCAATCTCCATCTTCC 524
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 318 CACCGATGGTCATACCAACAATTTGTCCTTTAACACTTGTCGTCTCAATCTCCATCTTCC 377
Query 525 TCTTCTCGCTGGAGAAAAAGGAGGATGCATCATTATTGATTCTACTCGTAAAGGAAAGCG 584
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 378 TCTTCTCGCTGGAGAAAAAGGAGGATGTATCATTATTGATTCTACTCGGAAAGGAAAGCG 437
Query 585 TTTTCCGGATAGCATGTCGAAAACGATACCTATGTGGTCTTGTGTAGTGAACCGTTCAAT 644
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 438 TTTTCCGGATAGCATGTCGAAAACGATACCTATATGGTCTTGTGTATTGAACCGTTCAAT 497
Query 645 ATTTAATCATTGGAACAGATTATGTAACATTGATGCAGGTTTGACTAGTGATGATGATGG 704
| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 498 AGTTAATCATTGGAAGAGATTATGTAACATTGATGCAGGTTTGACTAGTGATGATG--G- 554
Query 705 TGATAACATCAGGAAATTGTTAGATAAATGGGATTGTTCGTTACATCTACCACTATGGGT 764
||| || || ||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 555 TGAGAAGATAAGGGAATTGTTAGATAAAAGGGATTGTTCGTTACATCTACCACTATGGGT 614
Query 765 TTCAAATACTGAGAGGGCTTCTATTGAAGCTAGATTGGATGAGTGGACAAGAGAGTTAGA 824
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 615 TTCAAATACTGAGAGGGCCTCTATTGAAGCTAGATTGGATGAGTGGACAAGACAATTAGA 674
Query 825 TGAGAGTGGAGCTGATATAGCTTCTCTAGCTTCATGTTTGAGAAAACCTTTGCGTCCTCT 884
|||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct 675 TGAGAGTGGAGCTGATATAGCTACTCTAGCTTCATCTTTGAGAAAACCTTTGCGGCCTCT 734
Query 885 TTGGGTTTCACAGAAAACTGTTATATGGTTGAATGAAGTACCTGAGCATGATTCATGGGA 944
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 735 TTGGGTTTCACAGAAAACTGTCATATGGTTGAATGAAGTACCTGAGCATGATTCATGGGA 794
Query 945 TTTCACACCTCTTATCCTTGTCTCAGCTTCTGCTTCTGGTGAACTTCAAAACAGAACTAG 1004
|||||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 795 TTTCACACCTCTCGTTCTTGTCTCGGCTTCTGCTTCTGGTGAACTTCAAAACAGAACCAG 854
Query 1005 TTCAGAGTTTAGTTGGAATTATATTCCAGGGGCTGGTGATGATGAAGAGAGTTGGGCTAG 1064
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 855 TTCAGAGTTTAGTTGGAATTATATTCCAGGAGCTGGTGATGATGAAGAAAGTTGGGCTAG 914
Query 1065 AGGTTTATCCCCAAATGTTTTTTGGACACATGTTGATGAT-TTGATTCACTCAGGGCCTG 1123
||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 915 AGGTTTATCTCCAAATGTTTTTTGGACACATGTTGATGATCTT-ATTCACTCGGGGCCTG 973
Query 1124 ACTTGTGTAACCAGAAAGTTGCAGAGATTGTTGAAAACGATAGAGTGTATCGAGCGCATA 1183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 974 ACTTGTGTAACCAGAAAGTTGCAGAGATTGTTGAAAACGATAGAGTGTATCGAGCGCAGA 1033
Query 1184 GAGGTCAAGAAGCTCCTCAGGTTGTTGTCAAATGCTCAAAATCTAATGGTGGAGTCAATC 1243
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 GAGGTCATGAAGCTCCTCAGGTTGTTGTCAAATGCTCAAAATCTAATGGTGGAGTCAATC 1093
Query 1244 ACGCTAAGAGTGATGAAATCTTATGTCTTAGTGCACAAATACCGAAAGTTGATGAAGAAA 1303
|||||||||||| ||||||| ||| ||||| |||||||| ||| ||||||||||||||||
Sbjct 1094 ACGCTAAGAGTGGTGAAATCATATCTCTTACTGCACAAAAACCTAAAGTTGATGAAGAAA 1153
Query 1304 GATTAGTATTTTGGTTGTCATCAACGAATCTTGCTGTTGGTGCATCACAAGTAGCTTGTA 1363
| ||||||||||||| | ||||||| |||||||||||||| ||||||||||||||| |||
Sbjct 1154 GTTTAGTATTTTGGTCGGCATCAACAAATCTTGCTGTTGGAGCATCACAAGTAGCTGGTA 1213
Query 1364 AGGAGACATCAATTGACTGCATATTAAATTGTGATCAAAATCCTATCTCAGTCCCTGTAT 1423
||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1214 AGGTGACATCAATTGACTGCATATTAAATTGTGATCAAAACCCCGTCTCAGTCCCTGTAT 1273
Query 1424 CATATCTTGAAGAGCATTTGCATCTACCCATGAAGGGTTCAAAATTTGATAGATTTTCTA 1483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 CATATCTTGAAGAGTATTTGCATCTACCCATGAAGGGTTCAAAATTTGATAGATTTTCTA 1333
Query 1484 TATCAAGAAATCTTCCTCCCGCGGTTAATTTTGCTAAGCTCAAGATGAGTTCAGGGAAGA 1543
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 TATCAAGAAATCTTCGTTCCGCGGTTAATTTTGCTAAGCTCAAGATGAGTTCAGGGAAGA 1393
Query 1544 AAGTCTTGGTTTGTTGTCAAGATGGGGAAGATATCAGTATATGTGTTTGCTTGGCCATCT 1603
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1394 AAGTCTTAGTTTGTTGTCAAGATGGGGAAGATATCAGTATATGTGTTTGTTTGGCCATCT 1453
Query 1604 TGATGTCATTATTCAATGAAGAAGGGGCCTTTGATGGTGGAAAATCCTTTGAAGAGAAGA 1663
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1454 TGATGTCATTATTCAATGAAGAAGGGGACTTTGATGGTGGAAAATCCTTTGAAGAGAAGA 1513
Query 1664 GTATAACAAAAATGGATATGCGACGGATGCTAATATTTATATGCAAATACGCGGTGAATG 1723
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1514 GTATAACAAAAATGGATTTGCGACGGATGCTAATATTTATATGCAAATACGCTGTGAATG 1573
Query 1724 CTCGACCATCTAGAGGCAATCTAAAGCAAGTTTTTGGTTTTCTCTCGTCTCACCGCGAAA 1783
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1574 CTCGACCATCTAGAGGCAATCTAAAGCAAGTTTTTGGTTTTCTCTCGTCTCAGCGGGAAA 1633
Query 1784 ATTCAGACGAGTGAAGTAGAAAAATCCTCCAT 1815
|||||||| ||| |||||||||||| ||||||
Sbjct 1634 ATTCAGACTAGTAAAGTAGAAAAATGCTCCAT 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75228233875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5